Wall clock time and date at job start Tue Mar 31 2020 17:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47157 * 119.99123 * 2 1 3 5 5 C 1.50702 * 109.47290 * 295.00582 * 4 2 1 6 6 C 1.38245 * 119.97164 * 269.72258 * 5 4 2 7 7 C 1.38195 * 120.02676 * 179.72276 * 6 5 4 8 8 C 1.38459 * 119.97168 * 0.57330 * 7 6 5 9 9 F 1.35104 * 120.02521 * 179.67796 * 8 7 6 10 10 C 1.38456 * 119.94819 * 359.70167 * 8 7 6 11 11 C 1.38198 * 119.97805 * 359.97438 * 10 8 7 12 12 C 1.50697 * 109.47298 * 239.99147 * 2 1 3 13 13 O 1.21282 * 119.99957 * 262.35390 * 12 2 1 14 14 N 1.34775 * 119.99966 * 82.35939 * 12 2 1 15 15 C 1.48289 * 126.99884 * 174.05644 * 14 12 2 16 16 C 1.56019 * 105.05808 * 182.04098 * 15 14 12 17 17 H 1.08993 * 116.89959 * 159.19024 * 16 15 14 18 18 C 1.57090 * 99.60736 * 32.78894 * 16 15 14 19 19 C 1.49296 * 126.94396 * 354.10714 * 14 12 2 20 20 H 1.09002 * 116.78386 * 16.29266 * 19 14 12 21 21 C 1.56063 * 104.03040 * 246.64063 * 19 14 12 22 22 N 1.47873 * 105.15789 * 288.65274 * 21 19 14 23 23 C 1.36941 * 126.94376 * 182.06172 * 22 21 19 24 24 H 1.07999 * 119.99491 * 172.68289 * 23 22 21 25 25 C 1.38806 * 120.00143 * 352.68196 * 23 22 21 26 26 N 1.31622 * 120.00149 * 8.00298 * 25 23 22 27 27 Si 1.86803 * 120.00043 * 187.99996 * 25 23 22 28 28 H 1.48496 * 109.46890 * 94.95724 * 27 25 23 29 29 H 1.48501 * 109.47064 * 214.95902 * 27 25 23 30 30 H 1.48502 * 109.46920 * 334.95534 * 27 25 23 31 31 H 1.08995 * 109.46871 * 66.74030 * 1 2 3 32 32 H 1.09000 * 109.46828 * 186.74567 * 1 2 3 33 33 H 1.09002 * 109.46940 * 306.74148 * 1 2 3 34 34 H 1.09003 * 109.46818 * 54.99768 * 4 2 1 35 35 H 1.08998 * 109.47696 * 175.00068 * 4 2 1 36 36 H 1.08002 * 119.98578 * 359.97438 * 6 5 4 37 37 H 1.07999 * 120.01455 * 180.25180 * 7 6 5 38 38 H 1.07999 * 120.01434 * 180.02562 * 10 8 7 39 39 H 1.07994 * 119.99066 * 180.02562 * 11 10 8 40 40 H 1.08999 * 110.34894 * 63.14470 * 15 14 12 41 41 H 1.08998 * 110.32313 * 300.92740 * 15 14 12 42 42 H 1.08997 * 112.36698 * 64.27269 * 18 16 15 43 43 H 1.08995 * 112.36983 * 191.62901 * 18 16 15 44 44 H 1.09000 * 110.22254 * 169.76569 * 21 19 14 45 45 H 1.09003 * 110.44559 * 47.65347 * 21 19 14 46 46 H 0.96996 * 120.00033 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0573 2.4766 6 6 2.4843 1.0294 2.9821 7 6 2.1172 1.7478 4.1041 8 6 0.9098 1.4855 4.7290 9 9 0.5528 2.1828 5.8298 10 6 0.0688 0.5078 4.2251 11 6 0.4350 -0.2047 3.0991 12 6 2.0324 -0.7106 -1.2303 13 8 2.3663 -1.8747 -1.1644 14 7 2.1107 -0.0524 -2.4038 15 6 2.6911 -0.5557 -3.6722 16 6 2.5631 0.6320 -4.6759 17 1 3.2219 0.6170 -5.5441 18 6 2.7404 1.8354 -3.6819 19 6 1.6313 1.3323 -2.6898 20 1 1.4241 1.9679 -1.8289 21 6 0.4566 1.1257 -3.6963 22 7 1.0999 0.7106 -4.9614 23 6 0.4789 0.4505 -6.1539 24 1 1.0676 0.2690 -7.0409 25 6 -0.9072 0.4201 -6.2224 26 7 -1.6258 0.7943 -5.1851 27 14 -1.7526 -0.1517 -7.7870 28 1 -2.0793 -1.5958 -7.6735 29 1 -3.0028 0.6246 -7.9861 30 1 -0.8477 0.0617 -8.9449 31 1 -0.3633 0.4058 -0.9441 32 1 -0.3633 -1.0206 0.1207 33 1 -0.3633 0.6148 0.8235 34 1 1.6053 -1.7196 1.2954 35 1 3.1263 -0.7993 1.2058 36 1 3.4284 1.2302 2.4976 37 1 2.7742 2.5099 4.4965 38 1 -0.8734 0.3027 4.7114 39 1 -0.2210 -0.9671 2.7057 40 1 2.1277 -1.4170 -4.0314 41 1 3.7389 -0.8202 -3.5304 42 1 3.7294 1.8530 -3.2241 43 1 2.4855 2.7917 -4.1386 44 1 -0.0876 2.0595 -3.8371 45 1 -0.2168 0.3458 -3.3406 46 1 -2.5943 0.7734 -5.2332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032812333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:59 Heat of formation + Delta-G solvation = -23.689861 kcal Electronic energy + Delta-G solvation = -28680.422239 eV Core-core repulsion = 24678.051415 eV Total energy + Delta-G solvation = -4002.370825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.85133 -41.68685 -40.36418 -39.36677 -35.80189 -35.40201 -33.22037 -32.07604 -31.59126 -30.54992 -30.14323 -27.59216 -27.04599 -25.77323 -24.08241 -23.71158 -22.41659 -21.95339 -21.02365 -19.77467 -18.83091 -18.58059 -18.09892 -17.34153 -17.27735 -16.61464 -16.49517 -16.39329 -16.13568 -15.63265 -15.35142 -15.13526 -14.83400 -14.62960 -14.37271 -14.31812 -13.84429 -13.77943 -13.39117 -13.37521 -13.23904 -13.10577 -12.97997 -12.80757 -12.70051 -12.44446 -12.23408 -12.16580 -12.12614 -12.04631 -11.99489 -11.85314 -11.76626 -11.51684 -10.80151 -10.65447 -10.00102 -9.54516 -9.47463 -8.86851 -7.87361 -5.19097 0.17332 0.33022 1.44576 1.47075 1.54460 1.65594 2.01677 2.47367 2.65235 3.28195 3.33947 3.39180 3.47337 3.74239 3.77239 3.90936 3.92011 4.01873 4.03359 4.08741 4.16331 4.19739 4.37512 4.40370 4.43849 4.53799 4.70564 4.77291 4.81951 4.85508 4.91292 4.95617 5.05159 5.05560 5.10237 5.18160 5.21647 5.21905 5.26428 5.29807 5.34073 5.44403 5.55598 5.64764 5.69259 5.97659 6.13126 6.69677 7.05721 7.20403 7.71492 8.42299 9.24075 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.002730 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.448030 B =10254.531078 C =10799.529617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.116 0.884 4 C -0.053 4.053 5 C -0.088 4.088 6 C -0.085 4.085 7 C -0.152 4.152 8 C 0.072 3.928 9 F -0.152 7.152 10 C -0.156 4.156 11 C -0.089 4.089 12 C 0.525 3.475 13 O -0.595 6.595 14 N -0.608 5.608 15 C 0.098 3.902 16 C 0.132 3.868 17 H 0.125 0.875 18 C -0.129 4.129 19 C 0.105 3.895 20 H 0.151 0.849 21 C 0.181 3.819 22 N -0.620 5.620 23 C -0.234 4.234 24 H 0.087 0.913 25 C -0.064 4.064 26 N -0.947 5.947 27 Si 0.969 3.031 28 H -0.297 1.297 29 H -0.296 1.296 30 H -0.264 1.264 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.023 0.977 45 H 0.005 0.995 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 4.425 17.453 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.091 4.091 5 C -0.088 4.088 6 C -0.103 4.103 7 C -0.170 4.170 8 C 0.053 3.947 9 F -0.130 7.130 10 C -0.174 4.174 11 C -0.107 4.107 12 C 0.316 3.684 13 O -0.477 6.477 14 N -0.340 5.340 15 C -0.027 4.027 16 C 0.025 3.975 17 H 0.143 0.857 18 C -0.168 4.168 19 C 0.002 3.998 20 H 0.168 0.832 21 C 0.056 3.944 22 N -0.345 5.345 23 C -0.363 4.363 24 H 0.105 0.895 25 C -0.258 4.258 26 N -0.595 5.595 27 Si 0.798 3.202 28 H -0.225 1.225 29 H -0.223 1.223 30 H -0.189 1.189 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.041 0.959 45 H 0.023 0.977 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.542 3.782 17.475 20.266 hybrid contribution -1.352 -0.610 -0.856 1.712 sum 8.190 3.173 16.619 18.797 Atomic orbital electron populations 1.21784 0.92482 1.02558 1.02898 1.21195 0.97802 1.01206 0.90553 0.86635 1.20314 1.01807 0.97863 0.89082 1.19898 0.94962 0.97363 0.96616 1.21165 1.00276 0.94008 0.94864 1.21350 0.95839 1.02426 0.97422 1.18004 0.96138 0.94571 0.85977 1.91471 1.92168 1.77930 1.51471 1.21309 1.01004 0.96814 0.98311 1.21130 0.96199 0.99224 0.94171 1.20968 0.76996 0.86124 0.84335 1.90631 1.52686 1.18235 1.86131 1.49406 1.58550 1.16622 1.09419 1.23028 0.97004 0.97950 0.84692 1.23572 0.85911 0.92606 0.95424 0.85737 1.24075 0.98537 0.98198 0.96021 1.24436 0.95316 0.82292 0.97766 0.83182 1.21676 0.91567 0.96549 0.84623 1.45497 1.02062 1.79395 1.07530 1.19446 0.89756 1.39831 0.87242 0.89538 1.25569 0.97095 1.02563 1.00537 1.70104 1.04433 1.53775 1.31236 0.85189 0.78016 0.77102 0.79855 1.22456 1.22319 1.18882 0.93483 0.92987 0.89170 0.91015 0.90052 0.82934 0.83096 0.83669 0.84177 0.95514 0.90556 0.87721 0.89447 0.95926 0.97715 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.53 71.98 0.61 -2.86 16 2 C -0.09 -2.06 2.09 -11.54 -0.02 -2.08 16 3 H 0.12 2.17 7.20 -2.39 -0.02 2.16 16 4 C -0.05 -1.10 4.25 29.85 0.13 -0.97 16 5 C -0.09 -1.53 4.72 -19.86 -0.09 -1.62 16 6 C -0.09 -1.26 9.70 22.26 0.22 -1.04 16 7 C -0.15 -2.33 10.03 22.31 0.22 -2.10 16 8 C 0.07 1.32 7.30 22.37 0.16 1.48 16 9 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 10 C -0.16 -2.64 10.03 22.31 0.22 -2.42 16 11 C -0.09 -1.52 8.14 22.26 0.18 -1.34 16 12 C 0.53 17.63 7.02 87.66 0.62 18.25 16 13 O -0.60 -24.40 16.57 -3.04 -0.05 -24.45 16 14 N -0.61 -20.76 2.96 -767.16 -2.27 -23.03 16 15 C 0.10 3.58 6.40 87.08 0.56 4.14 16 16 C 0.13 4.64 5.53 46.93 0.26 4.90 16 17 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 18 C -0.13 -3.56 6.80 33.47 0.23 -3.33 16 19 C 0.10 3.26 4.62 46.95 0.22 3.48 16 20 H 0.15 3.57 7.12 -2.39 -0.02 3.55 16 21 C 0.18 8.19 4.77 87.18 0.42 8.61 16 22 N -0.62 -29.36 3.02 -648.43 -1.96 -31.32 16 23 C -0.23 -12.47 10.36 84.03 0.87 -11.60 16 24 H 0.09 4.38 7.84 -2.91 -0.02 4.35 16 25 C -0.06 -3.58 5.48 84.86 0.47 -3.11 16 26 N -0.95 -55.63 10.63 21.65 0.23 -55.40 16 27 Si 0.97 45.31 29.56 68.60 2.03 47.34 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 31 H 0.05 1.41 7.73 -2.39 -0.02 1.39 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.80 6.72 -2.39 -0.02 1.78 16 34 H 0.07 1.69 7.99 -2.39 -0.02 1.67 16 35 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.14 2.15 8.04 -2.91 -0.02 2.13 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.02 1.13 7.66 -2.39 -0.02 1.12 16 45 H 0.00 0.25 7.52 -2.39 -0.02 0.23 16 46 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -71.22 374.30 4.99 -66.23 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.97 Total: 14.57 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.26 Total: 8.38 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.00 Total: -109.75 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.22 4.99 -66.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032812333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.536 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds