Wall clock time and date at job start Tue Mar 31 2020 17:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.87501 * 2 1 4 4 C 1.54321 * 110.01101 * 121.09954 * 2 1 3 5 5 H 1.09000 * 110.72506 * 215.65790 * 4 2 1 6 6 N 1.46508 * 110.71939 * 338.93075 * 4 2 1 7 7 C 1.36940 * 120.00006 * 204.99579 * 6 4 2 8 8 H 1.08003 * 119.99957 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99693 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99613 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00013 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46941 * 90.00515 * 11 9 7 13 13 H 1.48501 * 109.46999 * 210.00080 * 11 9 7 14 14 H 1.48498 * 109.47095 * 329.99959 * 11 9 7 15 15 C 1.55158 * 102.94337 * 97.29366 * 4 2 1 16 16 C 1.54906 * 101.57776 * 35.50376 * 15 4 2 17 17 N 1.47022 * 109.88285 * 238.98406 * 2 1 3 18 18 C 1.34777 * 125.64760 * 59.33360 * 17 2 1 19 19 O 1.21282 * 119.99708 * 355.32027 * 18 17 2 20 20 C 1.50695 * 120.00147 * 175.32502 * 18 17 2 21 21 H 1.09003 * 110.26854 * 36.28372 * 20 18 17 22 22 C 1.54345 * 110.30192 * 274.21514 * 20 18 17 23 23 C 1.54339 * 102.39516 * 214.71395 * 22 20 18 24 24 C 1.51377 * 105.17018 * 26.35298 * 23 22 20 25 25 C 1.38461 * 130.37029 * 162.83020 * 24 23 22 26 26 C 1.38334 * 120.19641 * 180.02562 * 25 24 23 27 27 F 1.35100 * 120.05779 * 179.97438 * 26 25 24 28 28 C 1.38476 * 119.87975 * 359.92206 * 26 25 24 29 29 C 1.38062 * 119.90546 * 0.05186 * 28 26 25 30 30 C 1.38230 * 109.75734 * 342.81410 * 24 23 22 31 31 H 1.09003 * 109.47627 * 179.29697 * 1 2 3 32 32 H 1.09000 * 109.47476 * 299.29920 * 1 2 3 33 33 H 1.09000 * 109.47122 * 59.29831 * 1 2 3 34 34 H 0.96997 * 119.99963 * 25.00257 * 6 4 2 35 35 H 0.97000 * 120.00162 * 179.97438 * 10 9 7 36 36 H 1.08994 * 111.00524 * 277.42842 * 15 4 2 37 37 H 1.09000 * 111.03651 * 153.59369 * 15 4 2 38 38 H 1.09008 * 110.36562 * 204.15117 * 16 15 4 39 39 H 1.09003 * 110.37059 * 81.83188 * 16 15 4 40 40 H 1.09002 * 110.82520 * 332.93921 * 22 20 18 41 41 H 1.09005 * 110.82661 * 96.48755 * 22 20 18 42 42 H 1.08999 * 110.30739 * 145.27497 * 23 22 20 43 43 H 1.09007 * 110.30554 * 267.43466 * 23 22 20 44 44 H 1.07999 * 119.90477 * 359.96664 * 25 24 23 45 45 H 1.07998 * 120.04578 * 180.02562 * 28 26 25 46 46 H 1.08004 * 119.86910 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 2.9684 -0.2809 1.6162 6 7 1.0339 -0.8048 2.2878 7 6 1.4020 -0.9408 3.5998 8 1 2.4473 -1.0066 3.8633 9 6 0.4316 -0.9942 4.5909 10 7 0.7854 -1.1245 5.8519 11 14 -1.3763 -0.8811 4.1349 12 1 -1.9101 -2.2443 3.8856 13 1 -2.1293 -0.2508 5.2489 14 1 -1.5268 -0.0584 2.9079 15 6 2.3574 -2.1681 0.6902 16 6 2.8598 -1.8465 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.7718 -0.3836 -2.4662 19 8 1.0044 0.5215 -2.7171 20 6 2.4366 -1.1404 -3.5870 21 1 2.5350 -2.1939 -3.3250 22 6 3.8219 -0.5336 -3.8951 23 6 3.9312 -0.7167 -5.4237 24 6 2.5023 -0.7439 -5.9226 25 6 1.9945 -0.5698 -7.1989 26 6 0.6307 -0.6378 -7.4204 27 9 0.1382 -0.4670 -8.6668 28 6 -0.2287 -0.8824 -6.3624 29 6 0.2781 -1.0564 -5.0901 30 6 1.6434 -0.9872 -4.8672 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3634 0.5029 0.8962 33 1 -0.3633 0.5247 -0.8836 34 1 0.0951 -0.7454 2.0511 35 1 0.1074 -1.1614 6.5446 36 1 1.4520 -2.7741 0.6592 37 1 3.1341 -2.6597 1.2760 38 1 2.7127 -2.7048 -1.3951 39 1 3.9115 -1.5613 -0.7167 40 1 3.8502 0.5229 -3.6285 41 1 4.6095 -1.0851 -3.3816 42 1 4.4707 0.1201 -5.8673 43 1 4.4313 -1.6567 -5.6573 44 1 2.6650 -0.3794 -8.0239 45 1 -1.2938 -0.9364 -6.5324 46 1 -0.3927 -1.2467 -4.2653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074746856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:37 Heat of formation + Delta-G solvation = -30.654715 kcal Electronic energy + Delta-G solvation = -28609.551392 eV Core-core repulsion = 24606.878549 eV Total energy + Delta-G solvation = -4002.672843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.12225 -41.00636 -39.57122 -37.54919 -35.65443 -34.35647 -32.08179 -31.59302 -30.86125 -29.69493 -29.05842 -27.78160 -25.53057 -23.60262 -23.26599 -22.74328 -21.63981 -21.44245 -19.60810 -18.77681 -18.01888 -17.41060 -17.26945 -16.74678 -15.96433 -15.85186 -15.81871 -15.41244 -14.73350 -14.64206 -14.26526 -14.11204 -13.96896 -13.52497 -13.32904 -13.19369 -13.00355 -12.74139 -12.67110 -12.37993 -12.24775 -12.01702 -11.99661 -11.81805 -11.70920 -11.43129 -11.28359 -11.16803 -11.06519 -10.92798 -10.60058 -10.37398 -10.11637 -9.72342 -9.54005 -9.17888 -9.02409 -8.69616 -8.53556 -7.38190 -5.85832 -3.22774 0.86431 0.97885 2.61519 2.96697 3.31426 3.32939 3.34634 3.40597 3.78175 4.03850 4.20830 4.45041 4.51133 4.62193 4.64578 4.77106 4.83354 4.88802 4.95972 5.04797 5.13969 5.22878 5.30686 5.36221 5.39523 5.44202 5.47963 5.50128 5.62503 5.67751 5.72509 5.76461 5.82162 5.85385 5.88101 5.99314 6.01434 6.13133 6.25930 6.34637 6.44753 6.53173 6.55666 6.62636 6.79085 7.62529 7.89072 8.21874 8.32986 9.10211 9.82519 10.01142 11.31998 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.002684 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.036124 B =10430.623654 C =11283.423014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.180 3.820 5 H 0.075 0.925 6 N -0.740 5.740 7 C -0.249 4.249 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.154 4.154 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.533 3.467 19 O -0.533 6.533 20 C -0.067 4.067 21 H 0.108 0.892 22 C -0.105 4.105 23 C -0.079 4.079 24 C -0.065 4.065 25 C -0.146 4.146 26 C 0.099 3.901 27 F -0.141 7.141 28 C -0.155 4.155 29 C -0.053 4.053 30 C -0.084 4.084 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.368 0.632 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -2.223 -25.403 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.068 3.932 5 H 0.093 0.907 6 N -0.384 5.384 7 C -0.379 4.379 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.709 3.291 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.195 4.195 16 C -0.027 4.027 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.410 6.410 20 C -0.088 4.088 21 H 0.126 0.874 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.066 4.066 25 C -0.165 4.165 26 C 0.080 3.920 27 F -0.120 7.120 28 C -0.173 4.173 29 C -0.071 4.071 30 C -0.084 4.084 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.945 -1.708 -25.392 26.134 hybrid contribution -1.520 -0.030 -0.348 1.560 sum 4.425 -1.738 -25.739 26.175 Atomic orbital electron populations 1.22089 0.95149 1.02133 1.02830 1.21889 0.95046 0.96117 0.84797 0.90808 1.21146 0.93031 0.92269 0.86720 0.90728 1.42953 1.03544 1.88685 1.03228 1.19064 0.94865 1.42995 0.80982 0.89019 1.24654 0.97347 1.01646 0.95082 1.69689 1.32627 1.56484 0.98889 0.86664 0.86937 0.77982 0.77551 1.20962 1.21536 1.20151 1.23526 1.01935 1.00968 0.93063 1.22427 0.94732 0.88374 0.97147 1.48619 1.50117 1.30607 1.04880 1.19954 0.81750 0.84210 0.82054 1.90700 1.35791 1.31339 1.83167 1.20856 0.95361 1.01377 0.91226 0.87397 1.22266 0.94315 1.02270 0.95432 1.21072 0.92425 1.03164 0.94952 1.20316 0.96392 0.97627 0.92216 1.20445 0.93430 1.05180 0.97429 1.17497 0.92098 1.02723 0.79686 1.91494 1.88269 1.93042 1.39145 1.21017 1.00263 1.04126 0.91926 1.20462 0.94135 0.96382 0.96092 1.20066 0.93371 1.00841 0.94158 0.92760 0.90903 0.91483 0.79614 0.92921 0.90826 0.90024 0.91246 0.91298 0.90113 0.89294 0.89905 0.89354 0.84912 0.84543 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 7.92 37.16 0.29 -2.51 16 2 C 0.13 2.01 3.50 -66.96 -0.23 1.77 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.18 3.14 3.49 -66.09 -0.23 2.91 16 5 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 6 N -0.74 -16.39 4.75 -51.65 -0.25 -16.63 16 7 C -0.25 -6.65 10.44 -15.06 -0.16 -6.81 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 11 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.34 6.48 56.52 0.37 -5.97 16 15 C -0.15 -2.22 6.77 -24.58 -0.17 -2.39 16 16 C 0.10 1.06 6.64 -2.53 -0.02 1.04 16 17 N -0.61 -8.15 3.08 -163.03 -0.50 -8.65 16 18 C 0.53 7.22 6.63 -10.99 -0.07 7.15 16 19 O -0.53 -9.10 14.46 5.56 0.08 -9.02 16 20 C -0.07 -0.67 2.76 -91.89 -0.25 -0.92 16 21 H 0.11 0.88 6.78 -51.93 -0.35 0.53 16 22 C -0.11 -0.81 6.58 -25.33 -0.17 -0.98 16 23 C -0.08 -0.54 6.77 -26.85 -0.18 -0.72 16 24 C -0.07 -0.63 6.14 -104.21 -0.64 -1.26 16 25 C -0.15 -1.40 10.02 -39.46 -0.40 -1.80 16 26 C 0.10 1.06 7.30 -39.46 -0.29 0.77 16 27 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 28 C -0.15 -1.64 10.03 -39.56 -0.40 -2.03 16 29 C -0.05 -0.60 9.19 -39.55 -0.36 -0.96 16 30 C -0.08 -0.92 5.21 -104.19 -0.54 -1.46 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 32 H 0.07 1.35 6.77 -51.93 -0.35 0.99 16 33 H 0.07 1.16 6.61 -51.93 -0.34 0.82 16 34 H 0.37 8.13 2.93 -40.82 -0.12 8.01 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.61 6.94 -51.92 -0.36 0.25 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -32.02 368.44 -9.52 -41.54 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.60 Total: 7.52 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.91 Total: -8.04 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.03 Total: -52.81 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.02 -9.52 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074746856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.882 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds