Wall clock time and date at job start Tue Mar 31 2020 17:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.87501 * 2 1 4 4 C 1.54321 * 110.01101 * 121.09954 * 2 1 3 5 5 H 1.09000 * 110.72506 * 215.65790 * 4 2 1 6 6 N 1.46508 * 110.71939 * 338.93075 * 4 2 1 7 7 C 1.36940 * 120.00006 * 204.99579 * 6 4 2 8 8 H 1.08003 * 119.99957 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99693 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99613 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00013 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46941 * 90.00515 * 11 9 7 13 13 H 1.48501 * 109.46999 * 210.00080 * 11 9 7 14 14 H 1.48498 * 109.47095 * 329.99959 * 11 9 7 15 15 C 1.55158 * 102.94337 * 97.29366 * 4 2 1 16 16 C 1.54906 * 101.57776 * 35.50376 * 15 4 2 17 17 N 1.47022 * 109.88285 * 238.98406 * 2 1 3 18 18 C 1.34777 * 125.64760 * 59.33360 * 17 2 1 19 19 O 1.21282 * 119.99708 * 355.32027 * 18 17 2 20 20 C 1.50695 * 120.00147 * 175.32502 * 18 17 2 21 21 H 1.09003 * 110.26854 * 36.28372 * 20 18 17 22 22 C 1.54345 * 110.30192 * 274.21514 * 20 18 17 23 23 C 1.54339 * 102.39516 * 214.71395 * 22 20 18 24 24 C 1.51377 * 105.17018 * 26.35298 * 23 22 20 25 25 C 1.38461 * 130.37029 * 162.83020 * 24 23 22 26 26 C 1.38334 * 120.19641 * 180.02562 * 25 24 23 27 27 F 1.35100 * 120.05779 * 179.97438 * 26 25 24 28 28 C 1.38476 * 119.87975 * 359.92206 * 26 25 24 29 29 C 1.38062 * 119.90546 * 0.05186 * 28 26 25 30 30 C 1.38230 * 109.75734 * 342.81410 * 24 23 22 31 31 H 1.09003 * 109.47627 * 179.29697 * 1 2 3 32 32 H 1.09000 * 109.47476 * 299.29920 * 1 2 3 33 33 H 1.09000 * 109.47122 * 59.29831 * 1 2 3 34 34 H 0.96997 * 119.99963 * 25.00257 * 6 4 2 35 35 H 0.97000 * 120.00162 * 179.97438 * 10 9 7 36 36 H 1.08994 * 111.00524 * 277.42842 * 15 4 2 37 37 H 1.09000 * 111.03651 * 153.59369 * 15 4 2 38 38 H 1.09008 * 110.36562 * 204.15117 * 16 15 4 39 39 H 1.09003 * 110.37059 * 81.83188 * 16 15 4 40 40 H 1.09002 * 110.82520 * 332.93921 * 22 20 18 41 41 H 1.09005 * 110.82661 * 96.48755 * 22 20 18 42 42 H 1.08999 * 110.30739 * 145.27497 * 23 22 20 43 43 H 1.09007 * 110.30554 * 267.43466 * 23 22 20 44 44 H 1.07999 * 119.90477 * 359.96664 * 25 24 23 45 45 H 1.07998 * 120.04578 * 180.02562 * 28 26 25 46 46 H 1.08004 * 119.86910 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 2.9684 -0.2809 1.6162 6 7 1.0339 -0.8048 2.2878 7 6 1.4020 -0.9408 3.5998 8 1 2.4473 -1.0066 3.8633 9 6 0.4316 -0.9942 4.5909 10 7 0.7854 -1.1245 5.8519 11 14 -1.3763 -0.8811 4.1349 12 1 -1.9101 -2.2443 3.8856 13 1 -2.1293 -0.2508 5.2489 14 1 -1.5268 -0.0584 2.9079 15 6 2.3574 -2.1681 0.6902 16 6 2.8598 -1.8465 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.7718 -0.3836 -2.4662 19 8 1.0044 0.5215 -2.7171 20 6 2.4366 -1.1404 -3.5870 21 1 2.5350 -2.1939 -3.3250 22 6 3.8219 -0.5336 -3.8951 23 6 3.9312 -0.7167 -5.4237 24 6 2.5023 -0.7439 -5.9226 25 6 1.9945 -0.5698 -7.1989 26 6 0.6307 -0.6378 -7.4204 27 9 0.1382 -0.4670 -8.6668 28 6 -0.2287 -0.8824 -6.3624 29 6 0.2781 -1.0564 -5.0901 30 6 1.6434 -0.9872 -4.8672 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3634 0.5029 0.8962 33 1 -0.3633 0.5247 -0.8836 34 1 0.0951 -0.7454 2.0511 35 1 0.1074 -1.1614 6.5446 36 1 1.4520 -2.7741 0.6592 37 1 3.1341 -2.6597 1.2760 38 1 2.7127 -2.7048 -1.3951 39 1 3.9115 -1.5613 -0.7167 40 1 3.8502 0.5229 -3.6285 41 1 4.6095 -1.0851 -3.3816 42 1 4.4707 0.1201 -5.8673 43 1 4.4313 -1.6567 -5.6573 44 1 2.6650 -0.3794 -8.0239 45 1 -1.2938 -0.9364 -6.5324 46 1 -0.3927 -1.2467 -4.2653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074746856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:36 Heat of formation + Delta-G solvation = -48.604958 kcal Electronic energy + Delta-G solvation = -28610.329773 eV Core-core repulsion = 24606.878549 eV Total energy + Delta-G solvation = -4003.451224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.93975 -41.89630 -40.58278 -38.75263 -36.40294 -35.99896 -33.68003 -32.63024 -32.07407 -31.15884 -29.77115 -28.63064 -26.92962 -25.16104 -24.08097 -23.97090 -22.56662 -22.11415 -20.90414 -19.99033 -19.80367 -18.32368 -18.15671 -17.54506 -17.12128 -16.88809 -16.66931 -16.40781 -16.17694 -15.96280 -15.39171 -15.28292 -14.93957 -14.76624 -14.49632 -14.31184 -13.98892 -13.90861 -13.64394 -13.46180 -13.41735 -13.21966 -13.07544 -12.90294 -12.81613 -12.64959 -12.59476 -12.48829 -12.24732 -11.92485 -11.90477 -11.74338 -11.72178 -11.51149 -10.97405 -10.71137 -9.91883 -9.65089 -9.46723 -9.31312 -8.02723 -5.35628 0.08354 0.22754 1.36115 1.36927 1.43956 1.60579 1.92806 2.46272 2.54505 3.06597 3.26015 3.30346 3.48778 3.54390 3.57610 3.81128 3.92433 3.93192 3.99478 4.11203 4.14884 4.20930 4.27311 4.35400 4.38427 4.50526 4.60686 4.62644 4.63972 4.76223 4.81179 4.83949 4.89361 5.03406 5.06384 5.09008 5.11370 5.14751 5.21566 5.26129 5.28343 5.34356 5.48754 5.50113 5.78337 5.87572 6.21602 6.59052 7.06600 7.17359 7.82654 8.00122 9.18366 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.002684 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.036124 B =10430.623654 C =11283.423014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.066 0.934 4 C 0.169 3.831 5 H 0.071 0.929 6 N -0.746 5.746 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.938 3.062 12 H -0.278 1.278 13 H -0.297 1.297 14 H -0.257 1.257 15 C -0.147 4.147 16 C 0.103 3.897 17 N -0.607 5.607 18 C 0.530 3.470 19 O -0.575 6.575 20 C -0.060 4.060 21 H 0.134 0.866 22 C -0.102 4.102 23 C -0.074 4.074 24 C -0.066 4.066 25 C -0.147 4.147 26 C 0.084 3.916 27 F -0.146 7.146 28 C -0.164 4.164 29 C -0.070 4.070 30 C -0.102 4.102 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -3.254 -28.103 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 H 0.084 0.916 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.391 5.391 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.224 1.224 14 H -0.182 1.182 15 C -0.188 4.188 16 C -0.018 4.018 17 N -0.340 5.340 18 C 0.320 3.680 19 O -0.455 6.455 20 C -0.081 4.081 21 H 0.152 0.848 22 C -0.139 4.139 23 C -0.110 4.110 24 C -0.066 4.066 25 C -0.165 4.165 26 C 0.065 3.935 27 F -0.125 7.125 28 C -0.183 4.183 29 C -0.088 4.088 30 C -0.103 4.103 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.172 0.828 45 H 0.162 0.838 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.709 -2.756 -28.166 29.332 hybrid contribution -1.982 0.327 0.431 2.054 sum 5.727 -2.429 -27.735 28.424 Atomic orbital electron populations 1.21982 0.96061 1.01724 1.01657 1.21594 0.94220 0.95948 0.85514 0.91576 1.21369 0.91716 0.94747 0.86188 0.91050 1.42969 1.04659 1.88901 1.02590 1.19056 0.93632 1.39924 0.82877 0.91470 1.25351 1.01592 1.03031 0.95050 1.69847 1.33743 1.59401 1.00059 0.85678 0.81826 0.78270 0.77575 1.20447 1.22395 1.18152 1.23357 1.01844 0.98154 0.95441 1.22592 0.95545 0.88630 0.95077 1.48637 1.50269 1.30929 1.04183 1.20661 0.81045 0.83798 0.82468 1.90686 1.37689 1.33352 1.83724 1.20962 0.95916 1.02285 0.88948 0.84813 1.22353 0.93542 1.01598 0.96438 1.21169 0.90690 1.05130 0.94018 1.20689 0.97874 0.96352 0.91671 1.20722 0.93183 1.04273 0.98360 1.17699 0.92868 1.03448 0.79481 1.91477 1.88447 1.93174 1.39390 1.21146 1.00939 1.04287 0.91915 1.20510 0.94748 0.97515 0.96066 1.20339 0.93410 1.01197 0.95337 0.92745 0.92592 0.91988 0.79547 0.93408 0.91963 0.89476 0.87821 0.88337 0.91781 0.86094 0.88591 0.86638 0.82762 0.83755 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 7.92 71.98 0.57 -4.69 16 2 C 0.13 4.08 3.50 45.34 0.16 4.24 16 3 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.17 5.72 3.49 46.18 0.16 5.88 16 5 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 6 N -0.75 -32.75 4.75 -317.31 -1.51 -34.25 16 7 C -0.22 -12.06 10.44 84.03 0.88 -11.19 16 8 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 9 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 10 N -0.98 -61.28 13.97 21.65 0.30 -60.98 16 11 Si 0.94 44.87 27.74 68.60 1.90 46.78 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 14 H -0.26 -11.29 6.48 99.48 0.64 -10.64 16 15 C -0.15 -3.88 6.77 31.99 0.22 -3.67 16 16 C 0.10 1.82 6.64 86.85 0.58 2.40 16 17 N -0.61 -14.69 3.08 -788.08 -2.43 -17.12 16 18 C 0.53 13.25 6.63 87.66 0.58 13.84 16 19 O -0.58 -19.31 14.46 -3.03 -0.04 -19.36 16 20 C -0.06 -0.99 2.76 -11.62 -0.03 -1.03 16 21 H 0.13 1.50 6.78 -2.39 -0.02 1.48 16 22 C -0.10 -1.13 6.58 31.50 0.21 -0.92 16 23 C -0.07 -0.67 6.77 30.52 0.21 -0.47 16 24 C -0.07 -1.07 6.14 -19.60 -0.12 -1.19 16 25 C -0.15 -2.49 10.02 22.35 0.22 -2.27 16 26 C 0.08 1.72 7.30 22.35 0.16 1.88 16 27 F -0.15 -3.12 17.27 44.97 0.78 -2.35 16 28 C -0.16 -3.44 10.03 22.28 0.22 -3.22 16 29 C -0.07 -1.57 9.19 22.29 0.20 -1.36 16 30 C -0.10 -2.04 5.21 -19.59 -0.10 -2.14 16 31 H 0.05 1.80 8.02 -2.39 -0.02 1.78 16 32 H 0.06 2.05 6.77 -2.39 -0.02 2.03 16 33 H 0.06 2.15 6.61 -2.39 -0.02 2.13 16 34 H 0.37 16.03 2.93 -92.71 -0.27 15.76 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 1.22 6.94 -2.38 -0.02 1.21 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 0.95 7.91 -2.39 -0.02 0.94 16 41 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 46 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -72.45 368.44 4.25 -68.20 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.66 Total: 25.84 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.58 Total: -6.77 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.63 Total: -112.35 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Total: -72.45 4.25 -68.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074746856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.599 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds