Wall clock time and date at job start Tue Mar 31 2020 17:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88689 * 2 1 4 4 C 1.54907 * 111.00730 * 236.12071 * 2 1 3 5 5 N 1.47420 * 104.83524 * 204.91485 * 4 2 1 6 6 C 1.36932 * 125.65088 * 204.09015 * 5 4 2 7 7 H 1.08001 * 120.00072 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00288 * 0.04266 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46783 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47258 * 119.99537 * 10 8 6 13 13 H 1.48498 * 109.47021 * 240.00276 * 10 8 6 14 14 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 15 15 C 1.54330 * 107.26840 * 358.94103 * 14 5 4 16 16 H 1.08998 * 110.71700 * 96.16950 * 15 14 5 17 17 C 1.52994 * 110.71826 * 219.44364 * 15 14 5 18 18 N 1.46497 * 109.47309 * 293.54328 * 17 15 14 19 19 C 1.34780 * 120.00323 * 180.02562 * 18 17 15 20 20 O 1.21276 * 119.99580 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00211 * 180.02562 * 19 18 17 22 22 H 1.08995 * 112.50879 * 309.67633 * 21 19 18 23 23 C 1.52878 * 113.16626 * 179.76538 * 21 19 18 24 24 C 1.51430 * 84.74387 * 244.78127 * 23 21 19 25 25 C 1.38966 * 145.50034 * 179.97438 * 24 23 21 26 26 C 1.37927 * 120.35958 * 180.02562 * 25 24 23 27 27 C 1.38467 * 120.14923 * 0.02562 * 26 25 24 28 28 F 1.35107 * 120.14935 * 180.02562 * 27 26 25 29 29 C 1.38393 * 119.69526 * 0.02562 * 27 26 25 30 30 C 1.38197 * 120.10701 * 359.97376 * 29 27 26 31 31 H 1.09004 * 109.46972 * 182.42609 * 1 2 3 32 32 H 1.08998 * 109.47042 * 302.42241 * 1 2 3 33 33 H 1.08993 * 109.47294 * 62.42978 * 1 2 3 34 34 H 1.08997 * 110.36783 * 86.07204 * 4 2 1 35 35 H 1.08999 * 110.36448 * 323.74946 * 4 2 1 36 36 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88351 * 118.35702 * 14 5 4 38 38 H 1.08998 * 109.88379 * 239.52492 * 14 5 4 39 39 H 1.08997 * 109.47343 * 53.54751 * 17 15 14 40 40 H 1.09004 * 109.47006 * 173.54978 * 17 15 14 41 41 H 0.96998 * 119.99925 * 0.02562 * 18 17 15 42 42 H 1.09003 * 113.99243 * 358.73076 * 23 21 19 43 43 H 1.09003 * 113.98223 * 130.83041 * 23 21 19 44 44 H 1.08003 * 119.81618 * 0.02562 * 25 24 23 45 45 H 1.08002 * 119.92774 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.94714 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4271 -1.2427 -0.7738 6 6 4.4640 -1.5660 -1.6077 7 1 5.4125 -1.8763 -1.1948 8 6 4.2962 -1.4945 -2.9839 9 7 3.1406 -1.1155 -3.4870 10 14 5.7108 -1.9348 -4.1215 11 1 6.8936 -2.3248 -3.3125 12 1 5.3108 -3.0689 -4.9928 13 1 6.0530 -0.7603 -4.9634 14 6 3.4675 -1.2743 0.6956 15 6 2.0862 -0.8082 1.2019 16 1 1.4469 -1.6636 1.4203 17 6 2.2350 0.0868 2.4338 18 7 2.7615 -0.7023 3.5501 19 6 2.9754 -0.1189 4.7461 20 8 2.7315 1.0593 4.8983 21 6 3.5175 -0.9306 5.8943 22 1 2.9605 -1.8541 6.0521 23 6 3.7048 -0.1136 7.1728 24 6 5.1781 -0.4032 6.9762 25 6 6.4597 -0.2133 7.4788 26 6 7.5499 -0.7560 6.8314 27 6 7.3744 -1.4947 5.6735 28 9 8.4424 -2.0268 5.0396 29 6 6.1001 -1.6856 5.1686 30 6 5.0084 -1.1414 5.8181 31 1 -0.3633 -1.0268 0.0435 32 1 -0.3633 0.5510 0.8675 33 1 -0.3633 0.4756 -0.9109 34 1 2.1559 -0.1712 -2.0837 35 1 1.4520 -1.6698 -1.4030 36 1 3.0231 -1.0658 -4.4486 37 1 3.6651 -2.2896 1.0392 38 1 4.2427 -0.6000 1.0597 39 1 2.9223 0.9024 2.2094 40 1 1.2619 0.4960 2.7053 41 1 2.9562 -1.6448 3.4285 42 1 3.4423 0.9392 7.0685 43 1 3.2768 -0.5773 8.0616 44 1 6.6026 0.3624 8.3814 45 1 8.5428 -0.6044 7.2285 46 1 5.9585 -2.2614 4.2659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092914661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:47 Heat of formation + Delta-G solvation = 1.109965 kcal Electronic energy + Delta-G solvation = -28077.069070 eV Core-core repulsion = 24075.773647 eV Total energy + Delta-G solvation = -4001.295423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.07767 -41.31244 -39.19315 -37.96179 -35.34384 -34.68053 -32.96888 -31.17127 -30.77176 -29.54727 -27.74521 -26.21138 -25.61169 -24.69125 -23.09230 -22.40477 -21.35562 -20.24445 -19.83829 -19.24438 -17.83330 -17.35889 -16.84093 -16.76907 -15.96097 -15.77159 -15.45716 -15.24604 -15.17617 -14.55137 -14.22264 -14.07252 -13.82056 -13.74671 -13.33830 -13.05683 -12.81322 -12.65718 -12.56145 -12.13867 -12.04070 -11.93909 -11.69831 -11.57348 -11.43328 -11.16469 -10.91999 -10.88652 -10.82179 -10.31392 -10.10831 -9.98996 -9.92079 -9.78274 -9.43333 -9.22065 -9.01471 -8.72821 -8.66804 -6.84867 -5.66828 -3.08608 0.78618 0.89843 2.45318 3.07690 3.29223 3.38948 3.44794 3.47042 3.58164 3.95011 4.10082 4.24259 4.47157 4.65421 4.68274 4.86900 4.98668 5.09497 5.20495 5.22247 5.27477 5.33778 5.42547 5.48322 5.56160 5.62559 5.73222 5.73781 5.81930 5.85361 5.89684 6.03716 6.08974 6.18291 6.24039 6.28610 6.41006 6.50820 6.57021 6.57603 6.59052 6.76929 6.92309 7.46226 7.51896 7.62236 7.84844 8.13902 8.34918 9.20825 9.81584 10.46163 11.36944 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003199 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.988271 B = 8750.829819 C =11025.311021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.921 5.921 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.141 3.859 15 C -0.110 4.110 16 H 0.077 0.923 17 C 0.132 3.868 18 N -0.719 5.719 19 C 0.526 3.474 20 O -0.537 6.537 21 C -0.063 4.063 22 H 0.122 0.878 23 C -0.056 4.056 24 C -0.127 4.127 25 C -0.073 4.073 26 C -0.146 4.146 27 C 0.101 3.899 28 F -0.134 7.134 29 C -0.114 4.114 30 C -0.099 4.099 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.013 0.987 36 H 0.251 0.749 37 H 0.017 0.983 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.402 0.598 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -0.251 22.702 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.015 3.985 15 C -0.130 4.130 16 H 0.095 0.905 17 C 0.009 3.991 18 N -0.369 5.369 19 C 0.311 3.689 20 O -0.414 6.414 21 C -0.085 4.085 22 H 0.140 0.860 23 C -0.093 4.093 24 C -0.127 4.127 25 C -0.091 4.091 26 C -0.165 4.165 27 C 0.082 3.918 28 F -0.113 7.113 29 C -0.133 4.133 30 C -0.100 4.100 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.214 0.561 22.528 22.536 hybrid contribution 1.170 -1.018 -0.917 1.802 sum 0.956 -0.456 21.612 21.637 Atomic orbital electron populations 1.21649 0.95472 1.01198 1.00878 1.22605 0.94612 0.99522 0.96379 0.91047 1.21980 0.84017 0.95891 0.94672 1.44486 1.10570 1.78974 0.98982 1.19121 0.91069 1.37671 0.87230 0.90506 1.24782 0.97285 1.01958 0.96616 1.69803 1.22387 1.53842 1.10976 0.86010 0.81149 0.77625 0.80808 1.20531 1.21737 1.21706 1.21326 0.93445 0.97017 0.86698 1.22508 0.98653 0.98139 0.93652 0.90471 1.21479 0.98913 0.94147 0.84554 1.46055 1.65783 1.14174 1.10899 1.20009 0.77703 0.87724 0.83505 1.90695 1.51759 1.15809 1.83132 1.21371 0.91571 1.00412 0.95098 0.85974 1.21737 0.88965 1.02721 0.95844 1.22394 0.95232 0.98362 0.96749 1.20343 0.90058 0.98845 0.99835 1.20989 1.00275 0.99803 0.95396 1.17327 0.83266 0.98022 0.93222 1.91534 1.54053 1.84344 1.81370 1.20124 0.89552 1.02215 1.01425 1.20967 0.94281 0.98149 0.96571 0.93034 0.93671 0.92561 0.87598 0.96912 0.93777 0.96481 0.95862 0.91275 0.91473 0.76356 0.86678 0.87944 0.85185 0.84320 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.29 37.16 0.35 -1.67 16 2 C -0.11 -2.01 3.09 -88.47 -0.27 -2.28 16 3 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 4 C 0.16 3.77 5.36 -2.53 -0.01 3.76 16 5 N -0.60 -15.29 3.39 -170.07 -0.58 -15.86 16 6 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 10 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 C 0.14 2.83 6.52 -3.06 -0.02 2.81 16 15 C -0.11 -1.79 2.49 -88.79 -0.22 -2.01 16 16 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 17 C 0.13 1.90 4.99 -4.05 -0.02 1.88 16 18 N -0.72 -8.85 5.40 -60.30 -0.33 -9.18 16 19 C 0.53 6.67 7.33 -10.98 -0.08 6.59 16 20 O -0.54 -8.68 15.66 5.56 0.09 -8.59 16 21 C -0.06 -0.59 4.15 -96.56 -0.40 -0.99 16 22 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.06 -0.46 7.91 -27.59 -0.22 -0.68 16 24 C -0.13 -1.24 7.32 -107.55 -0.79 -2.02 16 25 C -0.07 -0.64 10.04 -39.43 -0.40 -1.04 16 26 C -0.15 -1.37 10.01 -39.61 -0.40 -1.77 16 27 C 0.10 1.14 7.31 -39.44 -0.29 0.85 16 28 F -0.13 -1.67 17.27 2.25 0.04 -1.63 16 29 C -0.11 -1.29 10.02 -39.54 -0.40 -1.68 16 30 C -0.10 -1.05 7.05 -104.55 -0.74 -1.78 16 31 H 0.05 0.76 8.11 -51.93 -0.42 0.33 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 35 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 39 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.40 4.20 8.33 -40.82 -0.34 3.86 16 42 H 0.12 1.11 7.02 -51.93 -0.36 0.75 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -32.61 379.74 -10.53 -43.13 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.85 Total: 2.24 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -4.15 Total: -6.79 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.34 Total: -51.20 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.61 -10.53 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092914661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.244 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds