Wall clock time and date at job start Tue Mar 31 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88689 * 2 1 4 4 C 1.54907 * 111.00730 * 236.12071 * 2 1 3 5 5 N 1.47420 * 104.83524 * 204.91485 * 4 2 1 6 6 C 1.36932 * 125.65088 * 204.09015 * 5 4 2 7 7 H 1.08001 * 120.00072 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00288 * 0.04266 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46783 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47258 * 119.99537 * 10 8 6 13 13 H 1.48498 * 109.47021 * 240.00276 * 10 8 6 14 14 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 15 15 C 1.54330 * 107.26840 * 358.94103 * 14 5 4 16 16 H 1.08998 * 110.71700 * 96.16950 * 15 14 5 17 17 C 1.52994 * 110.71826 * 219.44364 * 15 14 5 18 18 N 1.46497 * 109.47309 * 293.54328 * 17 15 14 19 19 C 1.34780 * 120.00323 * 180.02562 * 18 17 15 20 20 O 1.21276 * 119.99580 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00211 * 180.02562 * 19 18 17 22 22 H 1.08995 * 112.50879 * 309.67633 * 21 19 18 23 23 C 1.52878 * 113.16626 * 179.76538 * 21 19 18 24 24 C 1.51430 * 84.74387 * 244.78127 * 23 21 19 25 25 C 1.38966 * 145.50034 * 179.97438 * 24 23 21 26 26 C 1.37927 * 120.35958 * 180.02562 * 25 24 23 27 27 C 1.38467 * 120.14923 * 0.02562 * 26 25 24 28 28 F 1.35107 * 120.14935 * 180.02562 * 27 26 25 29 29 C 1.38393 * 119.69526 * 0.02562 * 27 26 25 30 30 C 1.38197 * 120.10701 * 359.97376 * 29 27 26 31 31 H 1.09004 * 109.46972 * 182.42609 * 1 2 3 32 32 H 1.08998 * 109.47042 * 302.42241 * 1 2 3 33 33 H 1.08993 * 109.47294 * 62.42978 * 1 2 3 34 34 H 1.08997 * 110.36783 * 86.07204 * 4 2 1 35 35 H 1.08999 * 110.36448 * 323.74946 * 4 2 1 36 36 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88351 * 118.35702 * 14 5 4 38 38 H 1.08998 * 109.88379 * 239.52492 * 14 5 4 39 39 H 1.08997 * 109.47343 * 53.54751 * 17 15 14 40 40 H 1.09004 * 109.47006 * 173.54978 * 17 15 14 41 41 H 0.96998 * 119.99925 * 0.02562 * 18 17 15 42 42 H 1.09003 * 113.99243 * 358.73076 * 23 21 19 43 43 H 1.09003 * 113.98223 * 130.83041 * 23 21 19 44 44 H 1.08003 * 119.81618 * 0.02562 * 25 24 23 45 45 H 1.08002 * 119.92774 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.94714 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4271 -1.2427 -0.7738 6 6 4.4640 -1.5660 -1.6077 7 1 5.4125 -1.8763 -1.1948 8 6 4.2962 -1.4945 -2.9839 9 7 3.1406 -1.1155 -3.4870 10 14 5.7108 -1.9348 -4.1215 11 1 6.8936 -2.3248 -3.3125 12 1 5.3108 -3.0689 -4.9928 13 1 6.0530 -0.7603 -4.9634 14 6 3.4675 -1.2743 0.6956 15 6 2.0862 -0.8082 1.2019 16 1 1.4469 -1.6636 1.4203 17 6 2.2350 0.0868 2.4338 18 7 2.7615 -0.7023 3.5501 19 6 2.9754 -0.1189 4.7461 20 8 2.7315 1.0593 4.8983 21 6 3.5175 -0.9306 5.8943 22 1 2.9605 -1.8541 6.0521 23 6 3.7048 -0.1136 7.1728 24 6 5.1781 -0.4032 6.9762 25 6 6.4597 -0.2133 7.4788 26 6 7.5499 -0.7560 6.8314 27 6 7.3744 -1.4947 5.6735 28 9 8.4424 -2.0268 5.0396 29 6 6.1001 -1.6856 5.1686 30 6 5.0084 -1.1414 5.8181 31 1 -0.3633 -1.0268 0.0435 32 1 -0.3633 0.5510 0.8675 33 1 -0.3633 0.4756 -0.9109 34 1 2.1559 -0.1712 -2.0837 35 1 1.4520 -1.6698 -1.4030 36 1 3.0231 -1.0658 -4.4486 37 1 3.6651 -2.2896 1.0392 38 1 4.2427 -0.6000 1.0597 39 1 2.9223 0.9024 2.2094 40 1 1.2619 0.4960 2.7053 41 1 2.9562 -1.6448 3.4285 42 1 3.4423 0.9392 7.0685 43 1 3.2768 -0.5773 8.0616 44 1 6.6026 0.3624 8.3814 45 1 8.5428 -0.6044 7.2285 46 1 5.9585 -2.2614 4.2659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092914661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:46 Heat of formation + Delta-G solvation = -17.555122 kcal Electronic energy + Delta-G solvation = -28077.878449 eV Core-core repulsion = 24075.773647 eV Total energy + Delta-G solvation = -4002.104802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.96289 -42.11700 -40.30580 -39.39623 -36.26264 -35.89305 -34.68580 -32.57417 -31.92801 -30.93193 -28.63381 -27.85660 -26.92978 -25.86168 -24.42666 -23.43654 -22.27052 -21.50543 -21.29601 -20.52413 -18.97176 -18.61289 -18.14941 -17.64322 -17.23940 -16.79373 -16.62134 -16.31909 -16.17806 -16.04018 -15.59823 -15.22770 -15.01175 -14.70360 -14.59829 -14.40593 -14.07571 -13.85331 -13.55710 -13.47674 -13.40471 -13.01216 -12.85992 -12.78535 -12.74114 -12.68383 -12.46264 -12.39001 -11.95851 -11.86682 -11.69982 -11.60408 -11.42064 -11.29004 -10.92933 -10.76320 -10.11388 -10.00745 -9.50431 -8.89369 -7.79187 -5.23456 0.02286 0.14338 1.44306 1.45085 1.49394 1.55255 2.12926 2.47185 2.51290 2.80787 3.25132 3.29935 3.39898 3.50968 3.60135 3.73520 3.85961 3.90651 3.96239 3.98224 4.24112 4.31456 4.37643 4.48056 4.49946 4.61534 4.62380 4.74661 4.77839 4.83676 4.85689 4.95559 4.96222 5.05911 5.09010 5.09955 5.16815 5.18699 5.35663 5.38933 5.42155 5.49315 5.54920 5.72067 5.82999 5.83589 6.30671 6.49354 7.10015 7.16562 7.77518 8.40783 9.22285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003199 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.988271 B = 8750.829819 C =11025.311021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.063 0.937 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.077 0.923 8 C -0.065 4.065 9 N -0.946 5.946 10 Si 0.977 3.023 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.098 0.902 17 C 0.145 3.855 18 N -0.714 5.714 19 C 0.525 3.475 20 O -0.574 6.574 21 C -0.056 4.056 22 H 0.157 0.843 23 C -0.047 4.047 24 C -0.132 4.132 25 C -0.073 4.073 26 C -0.144 4.144 27 C 0.074 3.926 28 F -0.148 7.148 29 C -0.130 4.130 30 C -0.116 4.116 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.067 0.933 35 H -0.008 1.008 36 H 0.247 0.753 37 H 0.028 0.972 38 H 0.015 0.985 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.413 0.587 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -0.537 25.437 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.258 4.258 9 N -0.596 5.596 10 Si 0.806 3.194 11 H -0.194 1.194 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.108 4.108 16 H 0.116 0.884 17 C 0.021 3.979 18 N -0.365 5.365 19 C 0.311 3.689 20 O -0.453 6.453 21 C -0.077 4.077 22 H 0.174 0.826 23 C -0.083 4.083 24 C -0.132 4.132 25 C -0.091 4.091 26 C -0.162 4.162 27 C 0.055 3.945 28 F -0.127 7.127 29 C -0.149 4.149 30 C -0.117 4.117 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.010 0.990 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.249 0.751 42 H 0.120 0.880 43 H 0.156 0.844 44 H 0.177 0.823 45 H 0.177 0.823 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.727 0.252 25.295 25.306 hybrid contribution 1.371 -0.914 -1.742 2.398 sum 0.644 -0.662 23.552 23.571 Atomic orbital electron populations 1.21599 0.92572 1.02120 1.02138 1.22440 0.96884 0.98245 0.94550 0.91823 1.21757 0.83640 0.94966 0.95916 1.44809 1.10538 1.79003 1.01104 1.19457 0.91937 1.37360 0.88117 0.90533 1.25597 0.99690 1.02468 0.98051 1.70061 1.24016 1.54781 1.10755 0.85026 0.78690 0.77014 0.78711 1.19392 1.21659 1.21827 1.21489 0.95697 0.97445 0.84066 1.22347 0.96282 0.98655 0.93512 0.88370 1.21192 0.99174 0.93185 0.84386 1.45980 1.65501 1.14563 1.10426 1.20579 0.76779 0.87486 0.84017 1.90683 1.53344 1.17535 1.83774 1.21469 0.90886 1.01415 0.93903 0.82563 1.21807 0.87843 1.02102 0.96589 1.22751 0.96353 0.97702 0.96374 1.20695 0.89460 0.98381 1.00550 1.21287 1.01690 0.98756 0.94494 1.17640 0.83076 0.99375 0.94374 1.91493 1.54607 1.84751 1.81800 1.20222 0.90106 1.02884 1.01709 1.21140 0.94811 0.98603 0.97109 0.92425 0.90669 0.92913 0.91454 0.99041 0.94326 0.95441 0.96679 0.93513 0.90067 0.75116 0.87972 0.84435 0.82274 0.82273 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.29 71.98 0.67 -2.90 16 2 C -0.10 -3.61 3.09 -9.40 -0.03 -3.64 16 3 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 4 C 0.16 7.91 5.36 86.86 0.47 8.37 16 5 N -0.63 -32.50 3.39 -691.99 -2.35 -34.85 16 6 C -0.24 -13.65 10.27 84.03 0.86 -12.79 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 9 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 10 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 C 0.14 5.51 6.52 86.73 0.57 6.08 16 15 C -0.09 -2.75 2.49 -9.61 -0.02 -2.77 16 16 H 0.10 2.69 8.01 -2.39 -0.02 2.67 16 17 C 0.14 3.92 4.99 86.38 0.43 4.35 16 18 N -0.71 -16.17 5.40 -463.08 -2.50 -18.67 16 19 C 0.52 12.30 7.33 87.66 0.64 12.94 16 20 O -0.57 -17.77 15.66 -3.02 -0.05 -17.82 16 21 C -0.06 -0.89 4.15 -14.64 -0.06 -0.95 16 22 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 23 C -0.05 -0.63 7.91 30.04 0.24 -0.39 16 24 C -0.13 -2.24 7.32 -21.76 -0.16 -2.40 16 25 C -0.07 -1.10 10.04 22.37 0.22 -0.88 16 26 C -0.14 -2.48 10.01 22.25 0.22 -2.26 16 27 C 0.07 1.67 7.31 22.36 0.16 1.83 16 28 F -0.15 -3.74 17.27 44.97 0.78 -2.96 16 29 C -0.13 -2.90 10.02 22.30 0.22 -2.68 16 30 C -0.12 -2.26 7.05 -19.82 -0.14 -2.40 16 31 H 0.06 1.56 8.11 -2.38 -0.02 1.54 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 3.82 5.87 -2.39 -0.01 3.80 16 35 H -0.01 -0.43 8.04 -2.39 -0.02 -0.45 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.02 0.63 7.77 -2.39 -0.02 0.61 16 39 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.41 7.68 8.33 -92.71 -0.77 6.91 16 42 H 0.10 1.74 7.02 -2.39 -0.02 1.72 16 43 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -73.66 379.74 3.11 -70.55 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.22 Total: 15.68 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.76 Total: -3.77 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.63 Total: -110.04 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.66 3.11 -70.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092914661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.995 kcal (2) G-P(sol) polarization free energy of solvation -73.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds