Wall clock time and date at job start Tue Mar 31 2020 17:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 F 1.39896 * 109.46974 * 120.00249 * 2 1 3 5 5 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 6 6 C 1.52997 * 109.47060 * 174.99999 * 5 2 1 7 7 N 1.46894 * 109.47515 * 180.02562 * 6 5 2 8 8 C 1.46851 * 110.99824 * 45.78997 * 7 6 5 9 9 C 1.53043 * 109.52321 * 185.84063 * 8 7 6 10 10 C 1.53112 * 109.27809 * 300.81841 * 9 8 7 11 11 C 1.53122 * 109.16075 * 57.65447 * 10 9 8 12 12 H 1.09001 * 109.53438 * 62.30592 * 11 10 9 13 13 C 1.53004 * 109.50491 * 182.40241 * 11 10 9 14 14 N 1.46496 * 109.47115 * 294.80419 * 13 11 10 15 15 C 1.34777 * 120.00447 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99235 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00560 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47214 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99631 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00822 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99338 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00370 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47431 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47463 * 120.00141 * 23 21 19 26 26 H 1.48502 * 109.47080 * 239.99931 * 23 21 19 27 27 C 1.46847 * 111.00429 * 170.00066 * 7 6 5 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 5 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 5 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 35 35 H 1.09005 * 109.46438 * 305.85752 * 8 7 6 36 36 H 1.08999 * 109.46115 * 65.82286 * 8 7 6 37 37 H 1.09004 * 109.50092 * 180.87881 * 9 8 7 38 38 H 1.08994 * 109.50087 * 60.76526 * 9 8 7 39 39 H 1.09002 * 109.52637 * 297.75437 * 10 9 8 40 40 H 1.08997 * 109.52190 * 177.55805 * 10 9 8 41 41 H 1.08992 * 109.47138 * 54.80282 * 13 11 10 42 42 H 1.09002 * 109.46941 * 174.80992 * 13 11 10 43 43 H 0.97006 * 120.00075 * 0.02562 * 14 13 11 44 44 H 1.09002 * 109.47056 * 300.00212 * 17 15 14 45 45 H 1.09002 * 109.46935 * 60.00036 * 17 15 14 46 46 H 0.96997 * 120.00102 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.46224 * 294.17931 * 27 7 6 48 48 H 1.09001 * 109.46046 * 54.14433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0544 -1.3053 -2.5135 8 6 3.2511 -0.9501 -3.6904 9 6 3.6945 -1.7959 -4.8864 10 6 5.1789 -1.5416 -5.1627 11 6 5.9881 -1.8732 -3.9058 12 1 5.8720 -2.9301 -3.6659 13 6 7.4661 -1.5650 -4.1537 14 7 7.9845 -2.4608 -5.1905 15 6 9.2727 -2.3710 -5.5764 16 8 10.0029 -1.5487 -5.0649 17 6 9.8061 -3.2928 -6.6425 18 16 11.5542 -2.9272 -6.9370 19 6 11.9083 -4.1147 -8.1896 20 1 11.1328 -4.7814 -8.5365 21 6 13.1842 -4.1933 -8.7304 22 7 14.1297 -3.3811 -8.3073 23 14 13.5596 -5.4518 -10.0589 24 1 12.3356 -6.2387 -10.3553 25 1 14.0097 -4.7533 -11.2895 26 1 14.6320 -6.3644 -9.5873 27 6 5.4783 -1.0253 -2.7383 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 2.1981 -1.1396 -3.4821 36 1 3.3913 0.1060 -3.9205 37 1 3.1088 -1.5210 -5.7636 38 1 3.5416 -2.8515 -4.6622 39 1 5.3264 -0.4939 -5.4250 40 1 5.5097 -2.1743 -5.9863 41 1 7.5717 -0.5308 -4.4812 42 1 8.0279 -1.7134 -3.2315 43 1 7.4004 -3.1183 -5.5999 44 1 9.7011 -4.3270 -6.3144 45 1 9.2441 -3.1454 -7.5648 46 1 15.0212 -3.4359 -8.6855 47 1 5.6081 0.0313 -2.9729 48 1 6.0428 -1.2694 -1.8384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266740011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:19 Heat of formation + Delta-G solvation = -108.509557 kcal Electronic energy + Delta-G solvation = -25580.482416 eV Core-core repulsion = 21709.877485 eV Total energy + Delta-G solvation = -3870.604931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -48.05080 -39.96000 -38.89191 -36.15600 -34.34291 -32.84728 -32.41947 -31.69683 -29.58366 -28.89217 -26.00682 -25.45085 -24.78946 -23.01606 -22.26084 -20.87822 -20.41381 -19.93482 -17.83684 -17.13889 -16.76377 -16.29768 -15.96528 -15.67090 -15.51830 -15.31683 -14.95578 -14.79756 -14.66981 -14.38833 -14.17290 -13.79972 -13.58878 -13.31520 -13.23942 -12.94714 -12.81595 -12.76662 -12.59167 -12.33604 -12.24563 -11.74562 -11.57724 -11.42086 -11.27959 -11.14899 -11.06412 -11.00880 -10.92974 -10.76935 -10.64511 -10.56954 -9.79328 -9.37946 -9.06860 -8.85018 -8.69692 -8.21665 -6.48690 -6.20875 -3.91151 3.02806 3.13324 3.22208 3.27075 3.31434 3.41292 3.78586 4.05516 4.15287 4.21260 4.21348 4.35943 4.43831 4.48941 4.54752 4.71517 4.77916 4.86201 4.96992 5.02061 5.06749 5.14399 5.14831 5.18980 5.22844 5.30768 5.35206 5.39317 5.42233 5.47521 5.54504 5.57822 5.64313 5.68722 5.70766 5.78949 5.83695 5.91808 5.97167 6.12760 6.15937 6.61780 6.68551 6.70759 7.60862 7.74232 8.36417 8.64754 9.24615 10.86643 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.001611 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.546048 B =17371.052627 C =17777.553154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.081 0.919 4 F -0.213 7.213 5 C -0.151 4.151 6 C 0.054 3.946 7 N -0.536 5.536 8 C 0.047 3.953 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.087 0.913 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.064 3.936 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.038 0.962 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.140 6.004 12.964 33.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 H 0.099 0.901 4 F -0.194 7.194 5 C -0.189 4.189 6 C -0.073 4.073 7 N -0.260 5.260 8 C -0.081 4.081 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.105 0.895 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.064 4.064 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.765 6.931 13.918 32.699 hybrid contribution -0.756 -1.193 -1.713 2.220 sum -29.521 5.738 12.205 32.456 Atomic orbital electron populations 1.22374 0.94202 1.03736 1.03462 1.21557 0.94871 0.96179 0.82215 0.90074 1.92831 1.90248 1.83338 1.53006 1.22402 0.96145 1.02869 0.97450 1.22114 0.94445 0.96810 0.93975 1.61940 1.02741 1.58227 1.03106 1.22254 0.97979 0.97413 0.90420 1.21590 0.96080 1.00936 0.96862 1.21669 0.94703 1.01954 0.97266 1.21397 0.93449 1.01478 0.95034 0.89492 1.21229 0.92456 0.94321 0.91756 1.45977 1.11729 1.39500 1.41950 1.20300 0.81052 0.84062 0.82874 1.90700 1.56823 1.36556 1.55240 1.23527 1.06367 1.01273 0.99210 1.85401 0.98152 1.49083 1.50825 1.22917 0.99173 1.21761 1.24477 0.90873 1.24993 0.95125 0.96383 0.97085 1.70027 1.02710 1.36220 1.41342 0.86117 0.78425 0.80384 0.80565 1.19621 1.20578 1.20569 1.22005 0.88163 0.97664 0.98551 0.91263 0.91372 0.90702 0.89631 0.89779 0.94657 0.89924 0.90259 0.94932 0.91429 0.90970 0.91902 0.91340 0.91750 0.91521 0.76839 0.89227 0.89279 0.92247 0.94382 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 9.65 37.16 0.36 -0.32 16 2 C 0.09 0.46 3.96 -26.73 -0.11 0.35 16 3 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 4 F -0.21 -1.78 16.76 2.25 0.04 -1.75 16 5 C -0.15 -0.78 4.23 -26.73 -0.11 -0.89 16 6 C 0.05 0.36 5.19 -3.83 -0.02 0.34 16 7 N -0.54 -4.07 4.81 -234.67 -1.13 -5.20 16 8 C 0.05 0.31 4.85 -3.83 -0.02 0.29 16 9 C -0.12 -0.78 6.09 -26.65 -0.16 -0.95 16 10 C -0.12 -0.93 5.13 -26.61 -0.14 -1.07 16 11 C -0.09 -0.81 2.39 -90.54 -0.22 -1.03 16 12 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 13 C 0.13 1.47 5.07 -4.04 -0.02 1.45 16 14 N -0.74 -9.81 5.31 -60.30 -0.32 -10.13 16 15 C 0.53 9.99 7.85 -10.99 -0.09 9.90 16 16 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 17 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.06 0.53 4.71 -3.84 -0.02 0.51 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.33 6.21 -51.93 -0.32 0.01 16 33 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.08 0.43 5.81 -51.93 -0.30 0.13 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.54 7.27 -51.93 -0.38 0.16 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.40 4.17 7.68 -40.82 -0.31 3.86 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.32 8.14 -51.92 -0.42 -0.11 16 48 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -34.52 397.01 -10.41 -44.94 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.45 Total: -1.68 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.12 Total: -7.32 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.71 Total: -40.88 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.52 -10.41 -44.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266740011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.572 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds