Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 F 1.39896 * 109.46974 * 120.00249 * 2 1 3 5 5 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 6 6 C 1.52997 * 109.47060 * 174.99999 * 5 2 1 7 7 N 1.46894 * 109.47515 * 180.02562 * 6 5 2 8 8 C 1.46851 * 110.99824 * 45.78997 * 7 6 5 9 9 C 1.53043 * 109.52321 * 185.84063 * 8 7 6 10 10 C 1.53112 * 109.27809 * 300.81841 * 9 8 7 11 11 C 1.53122 * 109.16075 * 57.65447 * 10 9 8 12 12 H 1.09001 * 109.53438 * 62.30592 * 11 10 9 13 13 C 1.53004 * 109.50491 * 182.40241 * 11 10 9 14 14 N 1.46496 * 109.47115 * 294.80419 * 13 11 10 15 15 C 1.34777 * 120.00447 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99235 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00560 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47214 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99631 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00822 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99338 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00370 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47431 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47463 * 120.00141 * 23 21 19 26 26 H 1.48502 * 109.47080 * 239.99931 * 23 21 19 27 27 C 1.46847 * 111.00429 * 170.00066 * 7 6 5 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 5 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 5 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 35 35 H 1.09005 * 109.46438 * 305.85752 * 8 7 6 36 36 H 1.08999 * 109.46115 * 65.82286 * 8 7 6 37 37 H 1.09004 * 109.50092 * 180.87881 * 9 8 7 38 38 H 1.08994 * 109.50087 * 60.76526 * 9 8 7 39 39 H 1.09002 * 109.52637 * 297.75437 * 10 9 8 40 40 H 1.08997 * 109.52190 * 177.55805 * 10 9 8 41 41 H 1.08992 * 109.47138 * 54.80282 * 13 11 10 42 42 H 1.09002 * 109.46941 * 174.80992 * 13 11 10 43 43 H 0.97006 * 120.00075 * 0.02562 * 14 13 11 44 44 H 1.09002 * 109.47056 * 300.00212 * 17 15 14 45 45 H 1.09002 * 109.46935 * 60.00036 * 17 15 14 46 46 H 0.96997 * 120.00102 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.46224 * 294.17931 * 27 7 6 48 48 H 1.09001 * 109.46046 * 54.14433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0544 -1.3053 -2.5135 8 6 3.2511 -0.9501 -3.6904 9 6 3.6945 -1.7959 -4.8864 10 6 5.1789 -1.5416 -5.1627 11 6 5.9881 -1.8732 -3.9058 12 1 5.8720 -2.9301 -3.6659 13 6 7.4661 -1.5650 -4.1537 14 7 7.9845 -2.4608 -5.1905 15 6 9.2727 -2.3710 -5.5764 16 8 10.0029 -1.5487 -5.0649 17 6 9.8061 -3.2928 -6.6425 18 16 11.5542 -2.9272 -6.9370 19 6 11.9083 -4.1147 -8.1896 20 1 11.1328 -4.7814 -8.5365 21 6 13.1842 -4.1933 -8.7304 22 7 14.1297 -3.3811 -8.3073 23 14 13.5596 -5.4518 -10.0589 24 1 12.3356 -6.2387 -10.3553 25 1 14.0097 -4.7533 -11.2895 26 1 14.6320 -6.3644 -9.5873 27 6 5.4783 -1.0253 -2.7383 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 2.1981 -1.1396 -3.4821 36 1 3.3913 0.1060 -3.9205 37 1 3.1088 -1.5210 -5.7636 38 1 3.5416 -2.8515 -4.6622 39 1 5.3264 -0.4939 -5.4250 40 1 5.5097 -2.1743 -5.9863 41 1 7.5717 -0.5308 -4.4812 42 1 8.0279 -1.7134 -3.2315 43 1 7.4004 -3.1183 -5.5999 44 1 9.7011 -4.3270 -6.3144 45 1 9.2441 -3.1454 -7.5648 46 1 15.0212 -3.4359 -8.6855 47 1 5.6081 0.0313 -2.9729 48 1 6.0428 -1.2694 -1.8384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266740011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = -131.540689 kcal Electronic energy + Delta-G solvation = -25581.481121 eV Core-core repulsion = 21709.877485 eV Total energy + Delta-G solvation = -3871.603636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.58318 -40.90611 -40.03529 -36.98106 -35.20701 -34.58206 -33.47490 -32.57242 -30.76797 -29.61668 -27.71164 -26.73568 -25.46145 -23.62671 -22.79562 -21.75344 -21.46351 -20.67558 -19.80931 -17.84672 -17.60331 -17.43911 -16.99362 -16.87583 -16.66017 -16.30143 -16.02882 -15.82245 -15.54781 -15.38227 -15.13601 -14.88329 -14.64934 -14.36456 -14.15147 -13.88572 -13.72040 -13.61784 -13.23168 -13.15650 -13.09184 -12.99845 -12.90701 -12.71846 -12.58638 -12.15551 -12.03061 -11.72141 -11.71301 -11.59098 -11.57638 -11.28380 -11.20424 -11.15576 -10.93744 -10.26936 -10.11473 -9.28334 -8.66591 -8.34543 -6.12646 1.27495 1.41867 1.47638 1.58828 1.61671 2.24707 2.28880 2.84163 2.99817 3.32739 3.62526 3.67366 3.75252 3.83193 3.86278 3.89993 4.00615 4.02276 4.19742 4.29467 4.31190 4.34454 4.39296 4.49540 4.51423 4.51904 4.57282 4.63680 4.66466 4.77854 4.83063 4.88688 4.92614 5.00152 5.07615 5.13465 5.18280 5.21255 5.27307 5.28773 5.40529 5.42603 5.51007 6.07754 6.14016 6.20416 6.50669 7.06943 7.24624 8.75011 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.001611 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.546048 B =17371.052627 C =17777.553154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.092 0.908 4 F -0.234 7.234 5 C -0.142 4.142 6 C 0.054 3.946 7 N -0.542 5.542 8 C 0.045 3.955 9 C -0.113 4.113 10 C -0.118 4.118 11 C -0.080 4.080 12 H 0.090 0.910 13 C 0.128 3.872 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.065 3.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.415 0.585 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.035 0.965 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.826 4.924 11.890 35.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.045 3.955 3 H 0.110 0.890 4 F -0.215 7.215 5 C -0.180 4.180 6 C -0.074 4.074 7 N -0.267 5.267 8 C -0.082 4.082 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.100 4.100 12 H 0.108 0.892 13 C 0.004 3.996 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.063 4.063 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.523 5.833 12.851 34.538 hybrid contribution -0.035 -0.811 -1.299 1.532 sum -31.557 5.022 11.552 33.978 Atomic orbital electron populations 1.22363 0.92948 1.03801 1.04366 1.21796 0.95918 0.96489 0.81314 0.88979 1.92791 1.90621 1.83834 1.54298 1.22335 0.94886 1.02618 0.98137 1.22104 0.95527 0.96643 0.93089 1.61936 1.02328 1.58583 1.03837 1.22328 0.98596 0.97385 0.89871 1.21570 0.95129 1.00899 0.97451 1.21676 0.95598 1.01651 0.96657 1.21264 0.91192 1.01668 0.95829 0.89169 1.21328 0.94325 0.93436 0.90504 1.45713 1.09942 1.39376 1.41310 1.20077 0.82352 0.83279 0.82430 1.90690 1.58495 1.38547 1.56923 1.23369 1.01078 1.02655 1.00926 1.85591 1.05096 1.50363 1.51566 1.23249 0.99873 1.21780 1.24481 0.89850 1.26131 0.94793 0.98568 0.99635 1.70189 1.03301 1.38288 1.43049 0.84896 0.78682 0.77361 0.76940 1.17981 1.19917 1.19972 1.21947 0.88904 0.97370 0.98101 0.91611 0.91384 0.88922 0.90351 0.88047 0.94420 0.91368 0.88751 0.94934 0.90116 0.91066 0.92471 0.91070 0.92592 0.92452 0.74718 0.87197 0.87120 0.91999 0.94640 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.65 71.98 0.69 -0.34 16 2 C 0.08 0.74 3.96 30.60 0.12 0.86 16 3 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 4 F -0.23 -3.85 16.76 44.97 0.75 -3.09 16 5 C -0.14 -1.23 4.23 30.59 0.13 -1.10 16 6 C 0.05 0.67 5.19 86.30 0.45 1.12 16 7 N -0.54 -7.41 4.81 -896.35 -4.31 -11.72 16 8 C 0.05 0.48 4.85 86.33 0.42 0.90 16 9 C -0.11 -1.21 6.09 30.65 0.19 -1.03 16 10 C -0.12 -1.61 5.13 30.67 0.16 -1.45 16 11 C -0.08 -1.26 2.39 -10.74 -0.03 -1.28 16 12 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 13 C 0.13 2.87 5.07 86.38 0.44 3.31 16 14 N -0.71 -17.83 5.31 -463.08 -2.46 -20.29 16 15 C 0.53 19.79 7.85 87.66 0.69 20.48 16 16 O -0.57 -26.73 15.86 -3.03 -0.05 -26.78 16 17 C -0.13 -5.12 6.16 71.23 0.44 -4.68 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 19 C -0.55 -31.28 9.50 67.96 0.65 -30.63 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.07 1.01 4.71 86.32 0.41 1.41 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.52 6.21 -2.39 -0.01 0.51 16 33 H 0.04 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.07 1.04 7.94 -2.39 -0.02 1.02 16 35 H 0.09 0.73 5.81 -2.38 -0.01 0.72 16 36 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.93 7.27 -2.39 -0.02 0.91 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.42 7.61 7.68 -92.70 -0.71 6.90 16 44 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 47 H 0.04 0.56 8.14 -2.38 -0.02 0.55 16 48 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 Total: -1.00 -76.81 397.01 0.52 -76.29 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.22 Total: 16.82 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.21 Total: -11.20 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -6.48 Total: -87.96 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -76.81 0.52 -76.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266740011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.254 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds