Wall clock time and date at job start Tue Mar 31 2020 17:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47083 * 2 1 4 4 F 1.39901 * 109.47344 * 119.99861 * 2 1 3 5 5 C 1.53006 * 109.46981 * 239.99836 * 2 1 3 6 6 C 1.52998 * 109.46758 * 174.99895 * 5 2 1 7 7 N 1.46907 * 109.46683 * 180.02562 * 6 5 2 8 8 C 1.46841 * 111.00108 * 51.74379 * 7 6 5 9 9 C 1.53041 * 109.52516 * 185.83925 * 8 7 6 10 10 C 1.53129 * 109.27485 * 300.82124 * 9 8 7 11 11 C 1.53111 * 109.15261 * 57.65744 * 10 9 8 12 12 C 1.46850 * 110.99701 * 175.95287 * 7 6 5 13 13 H 1.09001 * 109.46413 * 294.16324 * 12 7 6 14 14 C 1.53004 * 109.46154 * 54.14454 * 12 7 6 15 15 N 1.46499 * 109.47124 * 54.41724 * 14 12 7 16 16 C 1.34778 * 119.99610 * 174.95197 * 15 14 12 17 17 O 1.21278 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99394 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.46734 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99907 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99859 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99805 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47187 * 270.00192 * 24 22 20 26 26 H 1.48503 * 109.47007 * 29.99877 * 24 22 20 27 27 H 1.48497 * 109.47019 * 149.99866 * 24 22 20 28 28 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46893 * 299.99801 * 1 2 3 30 30 H 1.08994 * 109.47319 * 60.00219 * 1 2 3 31 31 H 1.08997 * 109.46597 * 55.00378 * 5 2 1 32 32 H 1.08998 * 109.47151 * 294.99846 * 5 2 1 33 33 H 1.08997 * 109.47300 * 60.00059 * 6 5 2 34 34 H 1.08998 * 109.47250 * 299.99891 * 6 5 2 35 35 H 1.08999 * 109.46322 * 305.85543 * 8 7 6 36 36 H 1.09005 * 109.46650 * 65.82016 * 8 7 6 37 37 H 1.08997 * 109.50276 * 60.75676 * 9 8 7 38 38 H 1.08993 * 109.50751 * 180.88245 * 9 8 7 39 39 H 1.08998 * 109.52024 * 177.55584 * 10 9 8 40 40 H 1.08998 * 109.52089 * 297.74897 * 10 9 8 41 41 H 1.09000 * 109.49435 * 182.39220 * 11 10 9 42 42 H 1.09007 * 109.51482 * 62.27485 * 11 10 9 43 43 H 1.08997 * 109.46819 * 294.41422 * 14 12 7 44 44 H 1.08998 * 109.46893 * 174.41844 * 14 12 7 45 45 H 0.96998 * 120.00044 * 354.95313 * 15 14 12 46 46 H 1.08992 * 109.47615 * 60.00464 * 18 16 15 47 47 H 1.08999 * 109.47238 * 299.99688 * 18 16 15 48 48 H 0.96999 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6133 -1.3137 7 7 4.0544 -1.3054 -2.5135 8 6 3.3441 -0.8449 -3.7133 9 6 3.7746 -1.6862 -4.9171 10 6 5.2872 -1.5510 -5.1132 11 6 6.0012 -1.9913 -3.8324 12 6 5.5063 -1.1410 -2.6601 13 1 5.7358 -0.0925 -2.8497 14 6 6.2027 -1.5909 -1.3742 15 7 5.7885 -2.9575 -1.0470 16 6 6.3538 -3.6022 -0.0071 17 8 7.2050 -3.0508 0.6580 18 6 5.9281 -5.0082 0.3291 19 16 6.8619 -5.5942 1.7647 20 6 6.1829 -7.2115 1.9318 21 1 5.4216 -7.5512 1.2452 22 6 6.6264 -8.0490 2.9460 23 7 6.1188 -9.2570 3.0712 24 14 7.9437 -7.4617 4.1332 25 1 9.2841 -7.8107 3.5975 26 1 7.8434 -5.9889 4.2948 27 1 7.7508 -8.1186 5.4509 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7716 -1.2056 33 1 3.9995 -1.0728 -0.4260 34 1 3.8532 0.4369 -1.3574 35 1 2.2698 -0.9502 -3.5622 36 1 3.5837 0.2024 -3.8978 37 1 3.5228 -2.7316 -4.7391 38 1 3.2589 -1.3339 -5.8104 39 1 5.6048 -2.1826 -5.9428 40 1 5.5350 -0.5118 -5.3297 41 1 7.0764 -1.8572 -3.9508 42 1 5.7842 -3.0416 -3.6372 43 1 5.9267 -0.9225 -0.5587 44 1 7.2829 -1.5630 -1.5171 45 1 5.1075 -3.3984 -1.5787 46 1 6.1230 -5.6603 -0.5223 47 1 4.8629 -5.0201 0.5595 48 1 6.4291 -9.8424 3.7797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317167714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:01 Heat of formation + Delta-G solvation = -103.833307 kcal Electronic energy + Delta-G solvation = -27066.538656 eV Core-core repulsion = 23196.136502 eV Total energy + Delta-G solvation = -3870.402154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.77895 -40.20593 -38.71372 -35.44722 -34.67622 -32.91195 -32.37945 -31.56131 -29.28401 -29.04012 -26.22187 -25.51747 -24.99734 -22.85580 -21.60710 -21.14006 -20.64053 -19.60315 -17.82666 -16.92018 -16.71424 -16.40212 -15.82450 -15.60672 -15.30780 -15.14720 -14.92226 -14.76547 -14.72122 -14.33317 -14.05528 -13.66713 -13.47508 -13.31142 -13.09856 -13.02461 -12.74942 -12.68803 -12.59484 -12.21503 -12.13411 -11.79273 -11.55904 -11.43858 -11.20271 -11.11305 -10.99589 -10.95863 -10.95296 -10.57678 -10.54263 -10.47816 -9.79966 -9.40799 -8.94989 -8.79450 -8.65947 -8.42023 -6.83958 -6.23224 -3.93820 2.86543 3.11612 3.31361 3.37574 3.49466 3.56033 3.82487 4.20594 4.31989 4.36395 4.38888 4.43878 4.47497 4.58992 4.59805 4.78708 4.84296 4.88294 4.92740 4.97689 5.06327 5.15953 5.15970 5.22425 5.27019 5.33313 5.37833 5.43866 5.52770 5.57488 5.61604 5.64655 5.67454 5.71366 5.82382 5.85335 5.86728 5.89151 5.90501 6.07263 6.13060 6.61595 6.74461 6.81489 7.83018 8.00155 8.47929 8.65033 9.23332 10.86147 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003058 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.118947 B = 9155.259338 C =10594.480210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.079 0.921 4 F -0.209 7.209 5 C -0.148 4.148 6 C 0.050 3.950 7 N -0.531 5.531 8 C 0.051 3.949 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.113 4.113 12 C 0.076 3.924 13 H 0.054 0.946 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.529 3.471 17 O -0.526 6.526 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.235 1.235 27 H -0.275 1.275 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.407 0.593 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 22.050 -17.718 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.052 3.948 3 H 0.097 0.903 4 F -0.190 7.190 5 C -0.186 4.186 6 C -0.078 4.078 7 N -0.256 5.256 8 C -0.077 4.077 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.151 4.151 12 C -0.033 4.033 13 H 0.072 0.928 14 C 0.002 3.998 15 N -0.378 5.378 16 C 0.315 3.685 17 O -0.401 6.401 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.519 5.519 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.159 1.159 27 H -0.200 1.200 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.242 0.758 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.497 22.293 -16.436 28.971 hybrid contribution -0.667 -0.012 -0.505 0.837 sum -9.164 22.282 -16.942 29.453 Atomic orbital electron populations 1.22372 0.94284 1.03823 1.03249 1.21529 0.94815 0.96028 0.82467 0.90344 1.92876 1.90163 1.83225 1.52728 1.22344 0.95925 1.03046 0.97267 1.22205 0.94700 0.96563 0.94295 1.61903 1.03490 1.57619 1.02585 1.22198 0.98999 0.96585 0.89914 1.21604 0.95898 1.01278 0.96808 1.21584 0.95399 1.01166 0.97722 1.21647 0.99644 1.00696 0.93117 1.21929 0.87502 0.98520 0.95337 0.92805 1.21320 0.99018 0.84228 0.95222 1.45813 1.43624 1.15241 1.33149 1.20261 0.81149 0.87572 0.79526 1.90687 1.31512 1.68001 1.49917 1.23252 1.04893 0.95051 1.04040 1.84757 1.54323 1.17900 1.34720 1.22336 1.27361 0.97253 1.19745 0.89422 1.24710 0.96061 0.93984 0.96569 1.69944 1.42178 1.07049 1.32714 0.86735 0.82339 0.81944 0.80843 1.19261 1.15885 1.20010 0.91150 0.91398 0.90902 0.90087 0.89477 0.89122 0.94880 0.90124 0.95068 0.90824 0.91674 0.91619 0.92414 0.91150 0.90556 0.91920 0.90911 0.75772 0.88684 0.88535 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.65 37.16 0.36 -0.77 16 2 C 0.09 0.70 3.96 -26.73 -0.11 0.60 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 4 F -0.21 -2.58 16.76 2.25 0.04 -2.54 16 5 C -0.15 -1.08 4.48 -26.73 -0.12 -1.20 16 6 C 0.05 0.43 4.37 -3.82 -0.02 0.41 16 7 N -0.53 -4.31 3.94 -226.68 -0.89 -5.20 16 8 C 0.05 0.33 5.03 -3.84 -0.02 0.31 16 9 C -0.12 -0.74 6.09 -26.64 -0.16 -0.90 16 10 C -0.12 -0.79 6.00 -26.61 -0.16 -0.95 16 11 C -0.11 -0.89 5.26 -26.65 -0.14 -1.03 16 12 C 0.08 0.64 2.10 -67.72 -0.14 0.50 16 13 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 14 C 0.13 1.46 4.56 -4.04 -0.02 1.44 16 15 N -0.72 -9.69 4.96 -60.29 -0.30 -9.99 16 16 C 0.53 9.76 7.85 -10.98 -0.09 9.68 16 17 O -0.53 -11.70 15.86 5.56 0.09 -11.61 16 18 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 19 S -0.14 -3.74 18.55 -107.50 -1.99 -5.74 16 20 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -27.08 13.97 55.49 0.78 -26.31 16 24 Si 0.86 22.25 27.74 -169.99 -4.72 17.54 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.23 -6.11 6.74 56.52 0.38 -5.73 16 27 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.44 6.19 -51.93 -0.32 0.12 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.03 6.29 -51.93 -0.33 0.71 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.47 5.84 -51.93 -0.30 0.17 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.68 7.32 -51.93 -0.38 0.30 16 43 H 0.06 0.78 6.76 -51.93 -0.35 0.43 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.41 4.79 7.43 -40.82 -0.30 4.49 16 46 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 47 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 48 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -34.25 390.21 -9.62 -43.87 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.33 Total: 0.51 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.18 Total: -6.42 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.42 Total: -41.50 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.72 Total: 17.54 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.25 -9.62 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317167714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.961 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds