Wall clock time and date at job start Tue Mar 31 2020 17:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47083 * 2 1 4 4 F 1.39901 * 109.47344 * 119.99861 * 2 1 3 5 5 C 1.53006 * 109.46981 * 239.99836 * 2 1 3 6 6 C 1.52998 * 109.46758 * 174.99895 * 5 2 1 7 7 N 1.46907 * 109.46683 * 180.02562 * 6 5 2 8 8 C 1.46841 * 111.00108 * 51.74379 * 7 6 5 9 9 C 1.53041 * 109.52516 * 185.83925 * 8 7 6 10 10 C 1.53129 * 109.27485 * 300.82124 * 9 8 7 11 11 C 1.53111 * 109.15261 * 57.65744 * 10 9 8 12 12 C 1.46850 * 110.99701 * 175.95287 * 7 6 5 13 13 H 1.09001 * 109.46413 * 294.16324 * 12 7 6 14 14 C 1.53004 * 109.46154 * 54.14454 * 12 7 6 15 15 N 1.46499 * 109.47124 * 54.41724 * 14 12 7 16 16 C 1.34778 * 119.99610 * 174.95197 * 15 14 12 17 17 O 1.21278 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99394 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.46734 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99907 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99859 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99805 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47187 * 270.00192 * 24 22 20 26 26 H 1.48503 * 109.47007 * 29.99877 * 24 22 20 27 27 H 1.48497 * 109.47019 * 149.99866 * 24 22 20 28 28 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46893 * 299.99801 * 1 2 3 30 30 H 1.08994 * 109.47319 * 60.00219 * 1 2 3 31 31 H 1.08997 * 109.46597 * 55.00378 * 5 2 1 32 32 H 1.08998 * 109.47151 * 294.99846 * 5 2 1 33 33 H 1.08997 * 109.47300 * 60.00059 * 6 5 2 34 34 H 1.08998 * 109.47250 * 299.99891 * 6 5 2 35 35 H 1.08999 * 109.46322 * 305.85543 * 8 7 6 36 36 H 1.09005 * 109.46650 * 65.82016 * 8 7 6 37 37 H 1.08997 * 109.50276 * 60.75676 * 9 8 7 38 38 H 1.08993 * 109.50751 * 180.88245 * 9 8 7 39 39 H 1.08998 * 109.52024 * 177.55584 * 10 9 8 40 40 H 1.08998 * 109.52089 * 297.74897 * 10 9 8 41 41 H 1.09000 * 109.49435 * 182.39220 * 11 10 9 42 42 H 1.09007 * 109.51482 * 62.27485 * 11 10 9 43 43 H 1.08997 * 109.46819 * 294.41422 * 14 12 7 44 44 H 1.08998 * 109.46893 * 174.41844 * 14 12 7 45 45 H 0.96998 * 120.00044 * 354.95313 * 15 14 12 46 46 H 1.08992 * 109.47615 * 60.00464 * 18 16 15 47 47 H 1.08999 * 109.47238 * 299.99688 * 18 16 15 48 48 H 0.96999 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6133 -1.3137 7 7 4.0544 -1.3054 -2.5135 8 6 3.3441 -0.8449 -3.7133 9 6 3.7746 -1.6862 -4.9171 10 6 5.2872 -1.5510 -5.1132 11 6 6.0012 -1.9913 -3.8324 12 6 5.5063 -1.1410 -2.6601 13 1 5.7358 -0.0925 -2.8497 14 6 6.2027 -1.5909 -1.3742 15 7 5.7885 -2.9575 -1.0470 16 6 6.3538 -3.6022 -0.0071 17 8 7.2050 -3.0508 0.6580 18 6 5.9281 -5.0082 0.3291 19 16 6.8619 -5.5942 1.7647 20 6 6.1829 -7.2115 1.9318 21 1 5.4216 -7.5512 1.2452 22 6 6.6264 -8.0490 2.9460 23 7 6.1188 -9.2570 3.0712 24 14 7.9437 -7.4617 4.1332 25 1 9.2841 -7.8107 3.5975 26 1 7.8434 -5.9889 4.2948 27 1 7.7508 -8.1186 5.4509 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7716 -1.2056 33 1 3.9995 -1.0728 -0.4260 34 1 3.8532 0.4369 -1.3574 35 1 2.2698 -0.9502 -3.5622 36 1 3.5837 0.2024 -3.8978 37 1 3.5228 -2.7316 -4.7391 38 1 3.2589 -1.3339 -5.8104 39 1 5.6048 -2.1826 -5.9428 40 1 5.5350 -0.5118 -5.3297 41 1 7.0764 -1.8572 -3.9508 42 1 5.7842 -3.0416 -3.6372 43 1 5.9267 -0.9225 -0.5587 44 1 7.2829 -1.5630 -1.5171 45 1 5.1075 -3.3984 -1.5787 46 1 6.1230 -5.6603 -0.5223 47 1 4.8629 -5.0201 0.5595 48 1 6.4291 -9.8424 3.7797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317167714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:01 Heat of formation + Delta-G solvation = -126.314374 kcal Electronic energy + Delta-G solvation = -27067.513508 eV Core-core repulsion = 23196.136502 eV Total energy + Delta-G solvation = -3871.377006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.58608 -41.12014 -39.94357 -36.12881 -35.72260 -34.67041 -33.54042 -32.56541 -30.62935 -29.64295 -27.89085 -27.05955 -25.60517 -23.47378 -22.32105 -21.93450 -21.75593 -20.36519 -19.89319 -17.91893 -17.59859 -17.57708 -17.11061 -16.82658 -16.59145 -16.28844 -15.94776 -15.78918 -15.53207 -15.36636 -15.04889 -14.89289 -14.82693 -14.52837 -14.07373 -13.89050 -13.87392 -13.62700 -13.34870 -13.16903 -13.08447 -12.98747 -12.88155 -12.78987 -12.64460 -12.15382 -12.06472 -11.86120 -11.72266 -11.58184 -11.54518 -11.19787 -11.16770 -11.09403 -10.98205 -10.53563 -10.05363 -9.29151 -8.98999 -8.51384 -6.21952 0.99558 1.31172 1.47287 1.56644 1.60629 2.24336 2.29595 2.70517 2.82141 2.86761 3.55706 3.73054 3.74944 3.78004 3.88372 3.95302 4.02207 4.05335 4.20493 4.23298 4.26868 4.33194 4.41255 4.43604 4.47210 4.55925 4.61485 4.67205 4.73508 4.76323 4.87042 4.91347 4.95463 5.04678 5.12388 5.15481 5.20910 5.28484 5.29477 5.33199 5.44894 5.52455 5.71098 6.08200 6.11448 6.15901 6.54382 6.93762 7.24353 8.61274 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003058 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.118947 B = 9155.259338 C =10594.480210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.094 0.906 4 F -0.239 7.239 5 C -0.139 4.139 6 C 0.053 3.947 7 N -0.538 5.538 8 C 0.051 3.949 9 C -0.116 4.116 10 C -0.117 4.117 11 C -0.113 4.113 12 C 0.086 3.914 13 H 0.068 0.932 14 C 0.126 3.874 15 N -0.696 5.696 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.109 4.109 19 S -0.174 6.174 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.261 1.261 26 H -0.238 1.238 27 H -0.258 1.258 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.417 0.583 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 24.046 -19.518 32.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.040 3.960 3 H 0.112 0.888 4 F -0.220 7.220 5 C -0.177 4.177 6 C -0.075 4.075 7 N -0.264 5.264 8 C -0.076 4.076 9 C -0.154 4.154 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.023 4.023 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.260 4.260 19 S 0.053 5.947 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.162 1.162 27 H -0.182 1.182 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.255 0.745 46 H 0.130 0.870 47 H 0.125 0.875 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.059 24.293 -18.283 31.725 hybrid contribution -0.602 -0.569 -0.095 0.834 sum -9.661 23.724 -18.378 31.526 Atomic orbital electron populations 1.22357 0.92925 1.03625 1.04438 1.21883 0.96006 0.96595 0.81475 0.88757 1.92817 1.90661 1.83936 1.54594 1.22281 0.95001 1.02372 0.98016 1.22103 0.95442 0.96682 0.93290 1.61890 1.03248 1.58042 1.03227 1.22267 0.99311 0.97029 0.88991 1.21601 0.95762 1.00706 0.97315 1.21560 0.95433 1.01657 0.96834 1.21642 0.99956 0.99819 0.93654 1.21833 0.87670 0.99176 0.93622 0.91467 1.21472 0.99189 0.82455 0.96695 1.45595 1.42452 1.15807 1.31180 1.19923 0.81016 0.86862 0.80342 1.90674 1.33596 1.68637 1.51710 1.23237 1.04421 0.96568 1.01793 1.84662 1.55634 1.15959 1.38474 1.22468 1.26853 0.99066 1.19311 0.92101 1.25563 0.98082 0.94106 0.98177 1.70018 1.43589 1.08151 1.33784 0.85863 0.79816 0.81292 0.79378 1.18536 1.16204 1.18222 0.92025 0.91574 0.88384 0.87405 0.90923 0.92347 0.93996 0.89124 0.94196 0.91826 0.90112 0.91242 0.91607 0.91075 0.91752 0.92734 0.91371 0.74523 0.87049 0.87489 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.65 71.98 0.69 -1.24 16 2 C 0.08 1.13 3.96 30.60 0.12 1.25 16 3 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 4 F -0.24 -5.97 16.76 44.97 0.75 -5.21 16 5 C -0.14 -1.79 4.48 30.60 0.14 -1.65 16 6 C 0.05 0.83 4.37 86.30 0.38 1.21 16 7 N -0.54 -7.64 3.94 -871.09 -3.44 -11.07 16 8 C 0.05 0.50 5.03 86.33 0.43 0.94 16 9 C -0.12 -1.11 6.09 30.65 0.19 -0.92 16 10 C -0.12 -1.21 6.00 30.67 0.18 -1.03 16 11 C -0.11 -1.56 5.26 30.64 0.16 -1.40 16 12 C 0.09 1.29 2.10 44.94 0.09 1.38 16 13 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 14 C 0.13 2.79 4.56 86.38 0.39 3.18 16 15 N -0.70 -18.19 4.96 -463.06 -2.30 -20.48 16 16 C 0.53 19.55 7.85 87.66 0.69 20.24 16 17 O -0.57 -25.38 15.86 -3.02 -0.05 -25.43 16 18 C -0.11 -4.39 6.16 71.24 0.44 -3.96 16 19 S -0.17 -9.14 18.55 -56.49 -1.05 -10.18 16 20 C -0.53 -31.77 10.04 67.95 0.68 -31.09 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 22 C 0.05 2.77 5.50 84.86 0.47 3.23 16 23 N -0.92 -56.97 13.97 21.65 0.30 -56.67 16 24 Si 0.91 46.11 27.74 68.60 1.90 48.01 16 25 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 27 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.80 6.19 -2.39 -0.01 0.79 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.32 6.29 -2.39 -0.02 1.30 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.73 5.84 -2.39 -0.01 0.72 16 36 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.05 7.32 -2.38 -0.02 1.03 16 43 H 0.05 1.34 6.76 -2.39 -0.02 1.32 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.42 9.34 7.43 -92.71 -0.69 8.66 16 46 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 47 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 48 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -75.15 390.21 1.40 -73.74 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.21 Total: 17.13 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.06 Total: -9.84 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -5.43 Total: -88.22 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.75 Total: -5.21 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.18 kcal Total: -75.15 1.40 -73.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317167714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.573 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds