Wall clock time and date at job start Tue Mar 31 2020 17:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47399 * 2 1 4 4 N 1.46499 * 109.47153 * 239.99995 * 2 1 3 5 5 C 1.36940 * 120.00082 * 85.00071 * 4 2 1 6 6 H 1.07994 * 119.99729 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00033 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99923 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47429 * 89.99307 * 9 7 5 11 11 H 1.48498 * 109.47156 * 209.99583 * 9 7 5 12 12 H 1.48501 * 109.46874 * 329.99408 * 9 7 5 13 13 C 1.53000 * 109.47115 * 120.00349 * 2 1 3 14 14 H 1.08992 * 109.51342 * 174.89929 * 13 2 1 15 15 C 1.53292 * 109.50927 * 294.99803 * 13 2 1 16 16 N 1.47158 * 108.38643 * 172.27839 * 15 13 2 17 17 C 1.34775 * 120.98291 * 129.43879 * 16 15 13 18 18 O 1.21273 * 120.00220 * 5.13240 * 17 16 15 19 19 C 1.50707 * 119.99655 * 184.85162 * 17 16 15 20 20 C 1.52993 * 112.84945 * 289.68019 * 19 17 16 21 21 C 1.53783 * 113.60983 * 158.37247 * 19 17 16 22 22 C 1.53784 * 87.08039 * 220.02071 * 21 19 17 23 23 F 1.39897 * 113.61187 * 270.88872 * 22 21 19 24 24 F 1.39897 * 113.69118 * 139.99150 * 22 21 19 25 25 C 1.53781 * 87.08098 * 25.43493 * 22 21 19 26 26 C 1.47150 * 118.03170 * 309.71801 * 16 15 13 27 27 C 1.52874 * 108.61089 * 50.22286 * 26 16 15 28 28 O 1.42963 * 109.55501 * 54.76668 * 13 2 1 29 29 H 1.09001 * 109.47026 * 59.99899 * 1 2 3 30 30 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46850 * 299.99737 * 1 2 3 32 32 H 0.97004 * 120.00456 * 265.00563 * 4 2 1 33 33 H 0.97000 * 120.00038 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.68631 * 52.55268 * 15 13 2 35 35 H 1.08999 * 109.71588 * 292.01436 * 15 13 2 36 36 H 1.09002 * 109.47334 * 64.50061 * 20 19 17 37 37 H 1.09000 * 109.47088 * 184.49379 * 20 19 17 38 38 H 1.08993 * 109.47512 * 304.48980 * 20 19 17 39 39 H 1.09001 * 113.61418 * 334.57104 * 21 19 17 40 40 H 1.09000 * 113.61225 * 105.47077 * 21 19 17 41 41 H 1.08998 * 113.61729 * 220.02243 * 25 22 21 42 42 H 1.09001 * 113.69262 * 89.12763 * 25 22 21 43 43 H 1.08995 * 109.68190 * 170.00743 * 26 16 15 44 44 H 1.09010 * 109.68219 * 290.55527 * 26 16 15 45 45 H 1.09003 * 109.58477 * 187.92267 * 27 26 16 46 46 H 1.09003 * 109.40896 * 67.84104 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6620 -3.5093 8 7 2.9244 -1.9390 -3.4502 9 14 2.7905 0.2701 -5.1182 10 1 4.1531 0.8543 -5.2028 11 1 2.5795 -0.6609 -6.2557 12 1 1.7811 1.3578 -5.1750 13 6 2.0400 -0.7213 1.2492 14 1 3.1261 -0.8015 1.2054 15 6 1.6350 0.0696 2.4983 16 7 1.9709 -0.7330 3.6851 17 6 2.6785 -0.2039 4.7029 18 8 2.9682 0.9736 4.6924 19 6 3.1041 -1.0744 5.8572 20 6 1.9321 -1.5017 6.7428 21 6 4.3004 -0.5129 6.6436 22 6 4.8220 -1.9571 6.7283 23 9 4.3540 -2.6572 7.8454 24 9 6.2065 -2.0655 6.5599 25 6 4.0216 -2.2379 5.4456 26 6 1.5169 -2.1321 3.7249 27 6 1.9230 -2.8142 2.4184 28 8 1.4668 -2.0294 1.3140 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2478 -2.3963 -4.2422 34 1 0.5626 0.2640 2.4781 35 1 2.1787 1.0139 2.5279 36 1 1.2541 -2.1331 6.1686 37 1 2.3090 -2.0592 7.6003 38 1 1.3982 -0.6174 7.0907 39 1 4.9379 0.1479 6.0561 40 1 4.0275 -0.0898 7.6104 41 1 3.5235 -3.2075 5.4452 42 1 4.5817 -2.0495 4.5297 43 1 1.9828 -2.6455 4.5660 44 1 0.4323 -2.1633 3.8303 45 1 1.4747 -3.8066 2.3696 46 1 3.0087 -2.9028 2.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485644699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:04 Heat of formation + Delta-G solvation = -133.022962 kcal Electronic energy + Delta-G solvation = -30342.267167 eV Core-core repulsion = 25904.386079 eV Total energy + Delta-G solvation = -4437.881088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.23222 -47.53590 -41.13326 -39.07224 -37.47902 -35.60125 -34.64465 -32.55017 -30.57703 -29.79576 -28.56973 -27.43220 -26.81699 -25.12708 -24.32507 -23.49433 -22.39016 -20.79222 -19.68660 -19.06884 -18.23515 -17.30157 -17.14271 -17.11695 -16.34955 -16.26085 -15.73564 -15.56195 -15.19111 -14.82547 -14.56993 -14.47493 -14.27338 -14.16895 -13.94337 -13.89293 -13.37732 -13.25718 -12.99782 -12.78639 -12.69584 -12.52124 -12.32355 -12.15315 -12.03084 -11.66840 -11.51839 -11.34894 -11.17078 -10.89444 -10.84718 -10.74151 -10.56251 -10.31419 -10.10140 -9.88875 -9.80787 -9.66200 -8.91178 -8.59317 -6.95246 -5.75065 -3.03949 2.29990 2.58914 3.01338 3.29798 3.44211 3.49543 3.51057 3.66329 3.73094 3.89597 3.90896 4.26530 4.55462 4.57642 4.67964 4.77015 4.85363 4.95652 5.00436 5.03561 5.09624 5.14156 5.26938 5.29920 5.33496 5.39725 5.53552 5.57544 5.60350 5.64199 5.68473 5.75730 5.92929 5.95321 6.15177 6.28166 6.42827 6.62224 6.79464 7.10976 7.14740 7.41190 7.70559 7.87654 8.43104 9.55096 10.12154 10.48685 11.47331 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.002778 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.267846 B =10075.823623 C =10433.474223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.606 5.606 17 C 0.536 3.464 18 O -0.532 6.532 19 C -0.102 4.102 20 C -0.141 4.141 21 C -0.136 4.136 22 C 0.258 3.742 23 F -0.176 7.176 24 F -0.186 7.186 25 C -0.156 4.156 26 C 0.064 3.936 27 C 0.044 3.956 28 O -0.356 6.356 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -2.575 23.963 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.040 4.040 16 N -0.339 5.339 17 C 0.323 3.677 18 O -0.409 6.409 19 C -0.105 4.105 20 C -0.198 4.198 21 C -0.174 4.174 22 C 0.221 3.779 23 F -0.157 7.157 24 F -0.167 7.167 25 C -0.194 4.194 26 C -0.059 4.059 27 C -0.034 4.034 28 O -0.274 6.274 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.379 -1.907 23.686 23.803 hybrid contribution 0.439 -0.020 -0.615 0.756 sum -0.940 -1.927 23.071 23.171 Atomic orbital electron populations 1.22416 0.98630 1.01623 0.99564 1.20192 0.92854 0.94603 0.84933 0.92293 1.42353 1.77876 1.10951 1.04892 1.19245 1.36662 0.93859 0.87341 0.91166 1.24736 1.02161 0.95948 0.98020 1.69675 1.50737 1.08628 1.28842 0.86205 0.77778 0.78599 0.83701 1.21757 1.21809 1.20759 1.22985 0.97594 0.83046 0.94710 0.91861 1.22542 1.02196 0.95757 0.83541 1.48107 1.54106 1.12798 1.18936 1.19941 0.77503 0.87734 0.82507 1.90720 1.55777 1.16034 1.78320 1.21826 0.96433 0.96361 0.95905 1.21856 0.95760 1.02720 0.99438 1.24022 0.95974 0.94251 1.03184 1.21908 0.75963 0.94534 0.85456 1.92995 1.87592 1.80726 1.54354 1.93036 1.31457 1.96837 1.95332 1.24326 0.97095 1.00279 0.97725 1.22678 1.01076 0.81878 1.00308 1.22847 0.99564 0.95331 0.85637 1.88120 1.67455 1.25833 1.46018 0.92871 0.92434 0.94683 0.77681 0.93556 0.89946 0.88201 0.90743 0.90013 0.90916 0.85958 0.88002 0.87639 0.86268 0.88672 0.90179 0.87749 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.06 37.16 0.34 -2.58 16 2 C 0.18 3.60 2.77 -67.93 -0.19 3.42 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.95 5.10 -53.43 -0.27 -18.22 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 9 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.08 1.24 2.60 -26.58 -0.07 1.17 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 15 C 0.08 1.12 5.81 -3.53 -0.02 1.10 16 16 N -0.61 -6.97 3.03 -172.53 -0.52 -7.49 16 17 C 0.54 6.35 6.66 -10.98 -0.07 6.27 16 18 O -0.53 -8.21 15.77 5.56 0.09 -8.12 16 19 C -0.10 -0.85 0.70 -154.85 -0.11 -0.96 16 20 C -0.14 -0.90 8.71 37.15 0.32 -0.57 16 21 C -0.14 -1.14 6.68 -25.92 -0.17 -1.31 16 22 C 0.26 2.19 3.26 -25.92 -0.08 2.11 16 23 F -0.18 -1.54 15.49 2.25 0.03 -1.50 16 24 F -0.19 -1.95 17.41 2.25 0.04 -1.91 16 25 C -0.16 -1.16 5.60 -25.92 -0.15 -1.30 16 26 C 0.06 0.56 5.31 -3.75 -0.02 0.54 16 27 C 0.04 0.49 6.97 37.09 0.26 0.75 16 28 O -0.36 -5.66 9.25 -35.23 -0.33 -5.99 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.09 7.56 -51.93 -0.39 0.69 16 31 H 0.03 0.52 6.42 -51.93 -0.33 0.18 16 32 H 0.39 10.47 7.59 -40.82 -0.31 10.16 16 33 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.08 6.28 -51.93 -0.33 0.76 16 35 H 0.10 1.46 7.12 -51.93 -0.37 1.09 16 36 H 0.07 0.39 6.00 -51.93 -0.31 0.08 16 37 H 0.08 0.47 6.15 -51.93 -0.32 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.12 1.14 7.82 -51.93 -0.41 0.73 16 40 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.11 0.57 7.08 -51.93 -0.37 0.20 16 42 H 0.12 0.95 8.09 -51.93 -0.42 0.53 16 43 H 0.10 0.59 3.24 -51.93 -0.17 0.43 16 44 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -32.82 364.07 -6.63 -39.45 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.65 Total: 6.92 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.21 Total: 1.41 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.07 Total: -53.08 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.24 Total: -14.11 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.82 -6.63 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485644699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.575 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds