Wall clock time and date at job start Tue Mar 31 2020 17:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47399 * 2 1 4 4 N 1.46499 * 109.47153 * 239.99995 * 2 1 3 5 5 C 1.36940 * 120.00082 * 85.00071 * 4 2 1 6 6 H 1.07994 * 119.99729 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00033 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99923 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47429 * 89.99307 * 9 7 5 11 11 H 1.48498 * 109.47156 * 209.99583 * 9 7 5 12 12 H 1.48501 * 109.46874 * 329.99408 * 9 7 5 13 13 C 1.53000 * 109.47115 * 120.00349 * 2 1 3 14 14 H 1.08992 * 109.51342 * 174.89929 * 13 2 1 15 15 C 1.53292 * 109.50927 * 294.99803 * 13 2 1 16 16 N 1.47158 * 108.38643 * 172.27839 * 15 13 2 17 17 C 1.34775 * 120.98291 * 129.43879 * 16 15 13 18 18 O 1.21273 * 120.00220 * 5.13240 * 17 16 15 19 19 C 1.50707 * 119.99655 * 184.85162 * 17 16 15 20 20 C 1.52993 * 112.84945 * 289.68019 * 19 17 16 21 21 C 1.53783 * 113.60983 * 158.37247 * 19 17 16 22 22 C 1.53784 * 87.08039 * 220.02071 * 21 19 17 23 23 F 1.39897 * 113.61187 * 270.88872 * 22 21 19 24 24 F 1.39897 * 113.69118 * 139.99150 * 22 21 19 25 25 C 1.53781 * 87.08098 * 25.43493 * 22 21 19 26 26 C 1.47150 * 118.03170 * 309.71801 * 16 15 13 27 27 C 1.52874 * 108.61089 * 50.22286 * 26 16 15 28 28 O 1.42963 * 109.55501 * 54.76668 * 13 2 1 29 29 H 1.09001 * 109.47026 * 59.99899 * 1 2 3 30 30 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46850 * 299.99737 * 1 2 3 32 32 H 0.97004 * 120.00456 * 265.00563 * 4 2 1 33 33 H 0.97000 * 120.00038 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.68631 * 52.55268 * 15 13 2 35 35 H 1.08999 * 109.71588 * 292.01436 * 15 13 2 36 36 H 1.09002 * 109.47334 * 64.50061 * 20 19 17 37 37 H 1.09000 * 109.47088 * 184.49379 * 20 19 17 38 38 H 1.08993 * 109.47512 * 304.48980 * 20 19 17 39 39 H 1.09001 * 113.61418 * 334.57104 * 21 19 17 40 40 H 1.09000 * 113.61225 * 105.47077 * 21 19 17 41 41 H 1.08998 * 113.61729 * 220.02243 * 25 22 21 42 42 H 1.09001 * 113.69262 * 89.12763 * 25 22 21 43 43 H 1.08995 * 109.68190 * 170.00743 * 26 16 15 44 44 H 1.09010 * 109.68219 * 290.55527 * 26 16 15 45 45 H 1.09003 * 109.58477 * 187.92267 * 27 26 16 46 46 H 1.09003 * 109.40896 * 67.84104 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6620 -3.5093 8 7 2.9244 -1.9390 -3.4502 9 14 2.7905 0.2701 -5.1182 10 1 4.1531 0.8543 -5.2028 11 1 2.5795 -0.6609 -6.2557 12 1 1.7811 1.3578 -5.1750 13 6 2.0400 -0.7213 1.2492 14 1 3.1261 -0.8015 1.2054 15 6 1.6350 0.0696 2.4983 16 7 1.9709 -0.7330 3.6851 17 6 2.6785 -0.2039 4.7029 18 8 2.9682 0.9736 4.6924 19 6 3.1041 -1.0744 5.8572 20 6 1.9321 -1.5017 6.7428 21 6 4.3004 -0.5129 6.6436 22 6 4.8220 -1.9571 6.7283 23 9 4.3540 -2.6572 7.8454 24 9 6.2065 -2.0655 6.5599 25 6 4.0216 -2.2379 5.4456 26 6 1.5169 -2.1321 3.7249 27 6 1.9230 -2.8142 2.4184 28 8 1.4668 -2.0294 1.3140 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2478 -2.3963 -4.2422 34 1 0.5626 0.2640 2.4781 35 1 2.1787 1.0139 2.5279 36 1 1.2541 -2.1331 6.1686 37 1 2.3090 -2.0592 7.6003 38 1 1.3982 -0.6174 7.0907 39 1 4.9379 0.1479 6.0561 40 1 4.0275 -0.0898 7.6104 41 1 3.5235 -3.2075 5.4452 42 1 4.5817 -2.0495 4.5297 43 1 1.9828 -2.6455 4.5660 44 1 0.4323 -2.1633 3.8303 45 1 1.4747 -3.8066 2.3696 46 1 3.0087 -2.9028 2.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485644699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:04 Heat of formation + Delta-G solvation = -154.814179 kcal Electronic energy + Delta-G solvation = -30343.212105 eV Core-core repulsion = 25904.386079 eV Total energy + Delta-G solvation = -4438.826026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93347 -48.25683 -42.02192 -40.13635 -38.36134 -37.13749 -35.78380 -34.32935 -32.00696 -30.49692 -30.00550 -28.59371 -27.49579 -26.50128 -25.45190 -24.80792 -23.48353 -21.75538 -21.05580 -19.87266 -19.29259 -18.94879 -18.02520 -17.84014 -17.46148 -17.15621 -16.87636 -16.51563 -16.41512 -16.04308 -15.91391 -15.36286 -15.18594 -15.14553 -15.06323 -14.69196 -14.62284 -14.47970 -14.16083 -13.97969 -13.63053 -13.41480 -13.30428 -13.15378 -13.01033 -12.91847 -12.82545 -12.44537 -12.38848 -12.29490 -12.18348 -12.10803 -11.82020 -11.63666 -11.57368 -11.43657 -11.15747 -10.92783 -10.76088 -9.62699 -9.00029 -7.91952 -5.20348 1.39261 1.47926 1.49299 1.57579 1.68804 2.34314 2.57066 2.63835 2.79512 3.00587 3.06604 3.20238 3.41806 3.52223 3.62399 3.92519 3.96254 3.97545 4.01426 4.11452 4.22479 4.29942 4.36711 4.38159 4.44297 4.51805 4.58859 4.61357 4.64102 4.76196 4.81675 4.84214 4.86687 4.90907 4.97648 5.10131 5.19795 5.24258 5.28567 5.52361 5.63057 6.22101 6.26642 6.30614 6.94881 7.36337 8.12068 8.36647 9.31475 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.002778 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.267846 B =10075.823623 C =10433.474223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.057 0.943 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.971 3.029 10 H -0.288 1.288 11 H -0.296 1.296 12 H -0.269 1.269 13 C 0.092 3.908 14 H 0.041 0.959 15 C 0.092 3.908 16 N -0.606 5.606 17 C 0.534 3.466 18 O -0.574 6.574 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.140 4.140 22 C 0.258 3.742 23 F -0.174 7.174 24 F -0.199 7.199 25 C -0.151 4.151 26 C 0.068 3.932 27 C 0.035 3.965 28 O -0.381 6.381 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 -3.046 25.753 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.075 0.925 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.800 3.200 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.194 1.194 13 C 0.032 3.968 14 H 0.059 0.941 15 C -0.031 4.031 16 N -0.338 5.338 17 C 0.323 3.677 18 O -0.453 6.453 19 C -0.098 4.098 20 C -0.195 4.195 21 C -0.178 4.178 22 C 0.222 3.778 23 F -0.155 7.155 24 F -0.180 7.180 25 C -0.189 4.189 26 C -0.054 4.054 27 C -0.042 4.042 28 O -0.300 6.300 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.144 0.856 44 H 0.115 0.885 45 H 0.148 0.852 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.587 -2.366 25.523 25.763 hybrid contribution 0.811 0.126 -1.072 1.350 sum -1.777 -2.241 24.451 24.618 Atomic orbital electron populations 1.22210 0.96896 1.01203 1.00434 1.20431 0.93903 0.94475 0.84574 0.92527 1.42524 1.78308 1.10475 1.05968 1.19638 1.34940 0.94179 0.88358 0.90614 1.25528 1.03046 0.96863 1.01351 1.69831 1.52576 1.10175 1.29325 0.85179 0.77827 0.77469 0.79534 1.21570 1.22303 1.19429 1.22534 0.96001 0.83917 0.94334 0.94122 1.22246 1.02445 0.95016 0.83405 1.48172 1.53928 1.13721 1.18014 1.20541 0.76529 0.87597 0.83062 1.90702 1.57209 1.18089 1.79302 1.21837 0.97193 0.95991 0.94766 1.21902 0.94995 1.03043 0.99513 1.24041 0.95916 0.94230 1.03650 1.21941 0.75341 0.94582 0.85959 1.92998 1.87457 1.80658 1.54378 1.93011 1.32681 1.96898 1.95439 1.24348 0.96569 1.01229 0.96773 1.22854 1.02351 0.80135 1.00030 1.23182 0.99774 0.96015 0.85266 1.88068 1.67709 1.25702 1.48532 0.94604 0.93410 0.91115 0.79224 0.94142 0.88876 0.89500 0.89033 0.88945 0.91130 0.87421 0.86807 0.84808 0.87016 0.85589 0.88468 0.85235 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.06 71.98 0.65 -4.53 16 2 C 0.18 6.86 2.77 44.99 0.12 6.98 16 3 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 4 N -0.73 -37.30 5.10 -322.94 -1.65 -38.95 16 5 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 8 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 9 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.09 2.97 2.60 30.69 0.08 3.05 16 14 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 15 C 0.09 2.43 5.81 86.35 0.50 2.93 16 16 N -0.61 -12.80 3.03 -818.15 -2.48 -15.27 16 17 C 0.53 11.90 6.66 87.66 0.58 12.48 16 18 O -0.57 -17.59 15.77 -3.01 -0.05 -17.64 16 19 C -0.09 -1.36 0.70 -52.40 -0.04 -1.40 16 20 C -0.14 -1.27 8.71 71.98 0.63 -0.64 16 21 C -0.14 -2.18 6.68 31.12 0.21 -1.97 16 22 C 0.26 3.92 3.26 31.12 0.10 4.02 16 23 F -0.17 -2.59 15.49 44.97 0.70 -1.89 16 24 F -0.20 -3.99 17.41 44.97 0.78 -3.21 16 25 C -0.15 -1.86 5.60 31.12 0.17 -1.69 16 26 C 0.07 0.97 5.31 86.21 0.46 1.43 16 27 C 0.03 0.69 6.97 71.94 0.50 1.19 16 28 O -0.38 -11.79 9.25 -148.98 -1.38 -13.17 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 31 H 0.07 1.95 6.42 -2.39 -0.02 1.93 16 32 H 0.38 20.84 7.59 -92.71 -0.70 20.14 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 34 H 0.09 2.25 6.28 -2.38 -0.01 2.23 16 35 H 0.09 2.53 7.12 -2.39 -0.02 2.52 16 36 H 0.09 0.54 6.00 -2.39 -0.01 0.52 16 37 H 0.09 0.71 6.15 -2.39 -0.01 0.70 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 2.02 7.82 -2.39 -0.02 2.00 16 40 H 0.11 1.46 8.10 -2.39 -0.02 1.44 16 41 H 0.13 0.88 7.08 -2.39 -0.02 0.86 16 42 H 0.11 1.61 8.09 -2.39 -0.02 1.59 16 43 H 0.13 1.02 3.24 -2.39 -0.01 1.01 16 44 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.13 1.92 8.14 -2.39 -0.02 1.91 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.81 364.07 3.83 -68.99 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.31 Total: 26.69 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.28 Total: 5.42 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.84 Total: -113.71 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.43 Total: -30.81 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 1.48 Total: -5.10 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -72.81 3.83 -68.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485644699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.828 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds