Wall clock time and date at job start Tue Mar 31 2020 17:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 C 1.52999 * 109.47111 * 239.99580 * 2 1 3 5 5 C 1.53000 * 109.47473 * 300.00453 * 4 2 1 6 6 C 1.53008 * 109.46913 * 299.99892 * 5 4 2 7 7 C 1.52999 * 109.46963 * 59.99796 * 6 5 4 8 8 C 1.52992 * 109.47236 * 299.99875 * 7 6 5 9 9 C 1.52999 * 109.47236 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47066 * 65.35994 * 9 8 7 11 11 C 1.46902 * 111.00224 * 175.28538 * 10 9 8 12 12 C 1.53001 * 109.47153 * 179.97438 * 11 10 9 13 13 F 1.39908 * 109.46960 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47537 * 300.00062 * 8 7 6 15 15 C 1.34772 * 120.00416 * 183.62392 * 14 8 7 16 16 O 1.21285 * 119.99851 * 354.63993 * 15 14 8 17 17 C 1.50707 * 120.00311 * 174.63914 * 15 14 8 18 18 S 1.80999 * 109.47189 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99715 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99891 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99674 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99674 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00159 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46975 * 270.00215 * 23 21 19 25 25 H 1.48507 * 109.47212 * 29.99996 * 23 21 19 26 26 H 1.48500 * 109.47353 * 149.99948 * 23 21 19 27 27 H 1.09003 * 109.47115 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.46810 * 59.99994 * 1 2 3 29 29 H 1.09002 * 109.47586 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47490 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47399 * 60.00243 * 4 2 1 32 32 H 1.08998 * 109.47806 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.47552 * 59.99416 * 5 4 2 34 34 H 1.08996 * 109.47346 * 300.00030 * 6 5 4 35 35 H 1.09002 * 109.47082 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.46936 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47015 * 60.00233 * 7 6 5 38 38 H 1.09003 * 109.47258 * 185.36243 * 9 8 7 39 39 H 1.09004 * 109.47709 * 305.36522 * 9 8 7 40 40 H 1.00906 * 110.99830 * 51.33712 * 10 9 8 41 41 H 1.09001 * 109.47637 * 300.00883 * 11 10 9 42 42 H 1.09007 * 109.46759 * 60.00416 * 11 10 9 43 43 H 1.08993 * 109.47757 * 300.00602 * 12 11 10 44 44 H 1.09006 * 109.47008 * 60.01085 * 12 11 10 45 45 H 0.97006 * 119.99342 * 3.62647 * 14 8 7 46 46 H 1.09001 * 109.46495 * 59.99844 * 17 15 14 47 47 H 1.08999 * 109.46998 * 300.00395 * 17 15 14 48 48 H 0.96991 * 119.99648 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2493 8 6 2.0400 -0.7214 1.2493 9 6 1.5295 0.0002 2.4981 10 7 2.1213 -0.6134 3.6944 11 6 1.7417 0.1240 4.9070 12 6 2.3751 -0.5437 6.1292 13 9 2.0130 0.1582 7.2840 14 7 3.5050 -0.7213 1.2493 15 6 4.1789 0.4435 1.3231 16 8 3.5765 1.4957 1.2913 17 6 5.6810 0.4386 1.4450 18 16 6.2857 2.1429 1.5212 19 6 8.0174 1.8473 1.6563 20 1 8.3929 0.8348 1.6709 21 6 8.8989 2.9158 1.7452 22 7 10.1926 2.6950 1.8467 23 14 8.2494 4.6670 1.7208 24 1 8.1906 5.1536 0.3191 25 1 6.8880 4.6984 2.3132 26 1 9.1532 5.5413 2.5108 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 -0.7218 -1.2490 31 1 1.6767 -0.2076 -2.1392 32 1 1.8929 -2.6776 -2.1394 33 1 0.4400 -2.1639 -1.2492 34 1 3.1299 -2.8851 0.0002 35 1 1.6762 -3.9126 0.0004 36 1 1.8929 -2.6778 2.1393 37 1 0.4399 -2.1637 1.2493 38 1 1.8123 1.0518 2.4513 39 1 0.4436 -0.0822 2.5471 40 1 3.1248 -0.6771 3.6093 41 1 2.0933 1.1530 4.8315 42 1 0.6567 0.1175 5.0113 43 1 2.0231 -1.5725 6.2045 44 1 3.4601 -0.5376 6.0251 45 1 3.9899 -1.5598 1.1962 46 1 6.1141 -0.0619 0.5789 47 1 5.9701 -0.0909 2.3528 48 1 10.8086 3.4416 1.9085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495307599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:35 Heat of formation + Delta-G solvation = -107.621187 kcal Electronic energy + Delta-G solvation = -27961.534265 eV Core-core repulsion = 24090.967856 eV Total energy + Delta-G solvation = -3870.566409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -47.72794 -41.00207 -38.13267 -36.29843 -33.75550 -32.47202 -32.40747 -31.35614 -29.16856 -28.90622 -26.29858 -25.62020 -24.68625 -22.63373 -22.18698 -21.53491 -20.57280 -18.35236 -17.97224 -16.93260 -16.47992 -16.33590 -16.09192 -15.85780 -15.43283 -15.02705 -14.90729 -14.74406 -14.35172 -14.31699 -13.89715 -13.75697 -13.43683 -13.09709 -12.96085 -12.83130 -12.72643 -12.55781 -12.40982 -12.05879 -11.90641 -11.74768 -11.48551 -11.29977 -11.26136 -11.07326 -11.04427 -10.92224 -10.64836 -10.48754 -10.35363 -10.19177 -9.88472 -9.36449 -9.04208 -8.93575 -8.54722 -8.53217 -6.95746 -6.32328 -4.04291 2.72540 2.89154 3.26949 3.30831 3.46579 3.60895 3.80820 4.29416 4.45782 4.51470 4.58552 4.62062 4.70988 4.71288 4.90834 4.94044 5.03456 5.06877 5.09116 5.18198 5.19867 5.27414 5.36102 5.42516 5.50224 5.51329 5.55678 5.58841 5.65792 5.70024 5.73524 5.82477 5.83685 5.89941 5.93878 5.96663 5.98170 6.10493 6.21131 6.28305 6.37001 6.65626 6.74081 7.12474 7.62497 7.90788 8.38257 8.45685 9.13901 10.77010 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.004080 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.903047 B = 6861.790168 C = 8816.195513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.115 4.115 8 C 0.193 3.807 9 C 0.045 3.955 10 N -0.682 5.682 11 C 0.026 3.974 12 C 0.064 3.936 13 F -0.218 7.218 14 N -0.727 5.727 15 C 0.529 3.471 16 O -0.514 6.514 17 C -0.126 4.126 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.097 3.903 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.236 1.236 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.343 0.657 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.399 0.601 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 -12.615 -0.935 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 H 0.112 0.888 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.159 4.159 7 C -0.153 4.153 8 C 0.107 3.893 9 C -0.085 4.085 10 N -0.314 5.314 11 C -0.104 4.104 12 C 0.008 3.992 13 F -0.199 7.199 14 N -0.381 5.381 15 C 0.316 3.684 16 O -0.389 6.389 17 C -0.277 4.277 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.160 1.160 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.161 0.839 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.235 0.765 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.715 -11.236 -0.846 24.465 hybrid contribution 1.637 0.008 -0.102 1.640 sum -20.078 -11.229 -0.947 23.024 Atomic orbital electron populations 1.21972 0.95110 1.01771 1.01738 1.21492 0.95582 1.01495 0.93695 0.88822 1.21486 1.01015 0.95083 0.97211 1.21582 1.00785 0.95885 0.97571 1.21564 1.00808 0.98812 0.94687 1.21760 1.01466 0.93583 0.98456 1.20255 0.79593 0.95705 0.93788 1.22443 0.99399 0.98382 0.88276 1.60445 1.16465 1.52991 1.01481 1.22467 1.01486 0.96492 0.89937 1.21881 1.00721 0.95646 0.80924 1.92764 1.93744 1.81653 1.51722 1.46168 1.06290 1.08917 1.76759 1.20283 0.89297 0.83557 0.75309 1.90650 1.69583 1.30960 1.47712 1.23312 0.93704 1.05132 1.05570 1.84777 1.06922 1.02947 1.96738 1.22316 0.88643 0.97625 1.58402 0.89427 1.24706 0.94095 0.99248 0.93171 1.69937 1.01519 1.32511 1.47664 0.86743 0.81237 0.84224 0.79664 1.19225 1.16027 1.19928 0.92652 0.92688 0.92183 0.91808 0.92190 0.92354 0.91828 0.92038 0.91927 0.90256 0.90488 0.92045 0.90281 0.83878 0.93710 0.90109 0.90009 0.90754 0.76545 0.88685 0.88668 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.15 37.16 0.30 -1.00 16 2 C -0.10 -1.11 2.09 -90.62 -0.19 -1.30 16 3 H 0.09 1.35 6.26 -51.93 -0.32 1.02 16 4 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 5 C -0.12 -0.96 5.65 -26.73 -0.15 -1.11 16 6 C -0.12 -0.89 5.75 -26.73 -0.15 -1.04 16 7 C -0.11 -0.90 4.41 -26.74 -0.12 -1.02 16 8 C 0.19 1.92 0.20 -131.82 -0.03 1.90 16 9 C 0.04 0.49 3.78 -3.83 -0.01 0.48 16 10 N -0.68 -7.06 6.00 -113.77 -0.68 -7.75 16 11 C 0.03 0.28 6.13 -3.82 -0.02 0.25 16 12 C 0.06 0.63 7.81 37.16 0.29 0.92 16 13 F -0.22 -2.71 17.36 2.25 0.04 -2.67 16 14 N -0.73 -8.06 3.16 -47.61 -0.15 -8.21 16 15 C 0.53 8.30 6.93 -10.98 -0.08 8.23 16 16 O -0.51 -9.75 12.16 5.55 0.07 -9.68 16 17 C -0.13 -2.28 6.16 36.01 0.22 -2.06 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.76 10.04 30.94 0.31 -14.44 16 20 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 23 Si 0.86 21.59 27.74 -169.99 -4.71 16.87 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.49 6.55 -51.93 -0.34 0.15 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 4.81 -51.93 -0.25 0.20 16 30 H 0.06 0.73 7.60 -51.93 -0.39 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.06 0.46 6.79 -51.93 -0.35 0.11 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 37 H 0.08 0.58 6.43 -51.93 -0.33 0.24 16 38 H 0.06 0.89 6.26 -51.93 -0.33 0.56 16 39 H 0.08 0.79 6.73 -51.93 -0.35 0.44 16 40 H 0.34 3.82 7.47 -39.29 -0.29 3.52 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.40 3.63 7.21 -40.82 -0.29 3.34 16 46 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 47 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.57 375.85 -8.66 -40.23 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.80 Total: 5.23 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 0.14 Total: -8.75 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.06 Total: -41.49 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.57 -8.66 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495307599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.393 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds