Wall clock time and date at job start Tue Mar 31 2020 17:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 F 1.39891 * 109.47546 * 239.99738 * 2 1 3 5 5 C 1.53006 * 109.47082 * 119.98961 * 2 1 3 6 6 C 1.52997 * 109.47105 * 185.00229 * 5 2 1 7 7 N 1.46906 * 109.47260 * 180.02562 * 6 5 2 8 8 C 1.48551 * 110.99827 * 290.12979 * 7 6 5 9 9 C 1.54384 * 104.59579 * 200.95837 * 8 7 6 10 10 C 1.54262 * 105.05807 * 23.84900 * 9 8 7 11 11 H 1.08996 * 110.32542 * 241.00588 * 10 9 8 12 12 C 1.52996 * 110.32236 * 118.89613 * 10 9 8 13 13 C 1.53002 * 109.46969 * 66.45415 * 12 10 9 14 14 N 1.46506 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00137 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47228 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99904 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99962 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99837 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47243 * 90.00026 * 23 21 19 25 25 H 1.48497 * 109.47112 * 209.99962 * 23 21 19 26 26 H 1.48504 * 109.47161 * 329.99868 * 23 21 19 27 27 C 1.48554 * 110.99959 * 174.70910 * 7 6 5 28 28 H 1.09000 * 109.47408 * 300.00427 * 1 2 3 29 29 H 1.08996 * 109.47121 * 60.01055 * 1 2 3 30 30 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46595 * 65.00573 * 5 2 1 32 32 H 1.08997 * 109.47177 * 305.00805 * 5 2 1 33 33 H 1.08995 * 109.47168 * 60.00371 * 6 5 2 34 34 H 1.09003 * 109.47480 * 300.00771 * 6 5 2 35 35 H 1.08999 * 110.41817 * 82.17704 * 8 7 6 36 36 H 1.09003 * 110.51554 * 319.78694 * 8 7 6 37 37 H 1.09001 * 110.32006 * 264.95633 * 9 8 7 38 38 H 1.08993 * 110.32659 * 142.75026 * 9 8 7 39 39 H 1.09004 * 109.47298 * 306.45635 * 12 10 9 40 40 H 1.09004 * 109.47552 * 186.45507 * 12 10 9 41 41 H 1.09004 * 109.46930 * 59.99996 * 13 12 10 42 42 H 1.09000 * 109.47312 * 299.99939 * 13 12 10 43 43 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 44 44 H 1.09000 * 109.46978 * 300.00347 * 17 15 14 45 45 H 1.08996 * 109.47197 * 59.99985 * 17 15 14 46 46 H 0.97002 * 119.99547 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.41199 * 40.26014 * 27 7 6 48 48 H 1.09008 * 110.41110 * 277.81416 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1421 5 6 2.0400 -0.7211 1.2494 6 6 3.5648 -0.6130 1.3139 7 7 4.0546 -1.3059 2.5132 8 6 3.6767 -0.5679 3.7458 9 6 4.6683 -1.0683 4.8181 10 6 5.8938 -1.5708 4.0274 11 1 6.0550 -2.6326 4.2134 12 6 7.1393 -0.7698 4.4120 13 6 7.5030 -1.0610 5.8694 14 7 8.6960 -0.2944 6.2375 15 6 9.2026 -0.3930 7.4825 16 8 8.6712 -1.1166 8.2980 17 6 10.4294 0.3959 7.8615 18 16 10.8597 0.0513 9.5855 19 6 12.2845 1.0740 9.7555 20 1 12.6285 1.6642 8.9191 21 6 12.9641 1.1218 10.9647 22 7 12.5446 0.4027 11.9844 23 14 14.4741 2.2064 11.1452 24 1 14.0618 3.5560 11.6077 25 1 15.4002 1.6045 12.1379 26 1 15.1609 2.3211 9.8336 27 6 5.5396 -1.3317 2.5439 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5136 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2058 32 1 1.6053 -0.2615 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9995 -1.0726 0.4262 35 1 2.6530 -0.8073 4.0335 36 1 3.7876 0.5062 3.5972 37 1 4.2268 -1.8839 5.3908 38 1 4.9541 -0.2510 5.4803 39 1 6.9376 0.2948 4.2937 40 1 7.9694 -1.0563 3.7662 41 1 7.7047 -2.1256 5.9878 42 1 6.6730 -0.7745 6.5152 43 1 9.1208 0.2845 5.5855 44 1 11.2595 0.1091 7.2158 45 1 10.2279 1.4604 7.7427 46 1 13.0198 0.4359 12.8294 47 1 5.9435 -0.3775 2.2056 48 1 5.9185 -2.1463 1.9266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664695997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:51 Heat of formation + Delta-G solvation = -109.371331 kcal Electronic energy + Delta-G solvation = -25003.568686 eV Core-core repulsion = 21132.926385 eV Total energy + Delta-G solvation = -3870.642301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.07485 -39.82645 -39.01237 -36.05789 -34.63887 -32.86609 -32.42905 -30.69420 -29.49337 -28.98357 -26.97888 -25.47338 -23.87846 -23.05412 -21.84499 -21.31659 -20.49207 -19.84109 -17.82197 -17.17512 -16.69299 -16.47194 -16.08431 -15.99327 -15.62433 -15.30764 -15.05284 -14.80462 -14.73659 -14.29597 -13.95169 -13.90672 -13.47190 -13.21071 -13.09145 -12.85669 -12.78244 -12.61320 -12.48442 -12.30860 -12.13592 -12.00669 -11.60399 -11.38236 -11.33830 -11.21480 -11.06607 -11.02594 -11.01153 -10.87750 -10.80136 -10.75248 -9.81561 -9.39322 -9.07134 -8.94368 -8.86422 -8.23482 -6.49977 -6.21739 -3.92312 3.03322 3.11179 3.22140 3.27538 3.31261 3.42808 3.73808 4.05433 4.16912 4.18496 4.20422 4.26585 4.33249 4.42230 4.56491 4.72538 4.78120 4.82237 4.89605 5.02383 5.05908 5.09837 5.12565 5.13477 5.22262 5.25855 5.28390 5.32913 5.40190 5.47008 5.53689 5.57140 5.59100 5.65034 5.68128 5.72893 5.84691 5.89321 5.99429 6.02646 6.13961 6.41276 6.57276 6.63505 7.59406 7.71858 8.35101 8.62622 9.23573 10.85723 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.039010 B = 0.001420 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.587268 B =19715.585570 C =19918.386610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.081 0.919 4 F -0.214 7.214 5 C -0.142 4.142 6 C 0.043 3.957 7 N -0.511 5.511 8 C 0.031 3.969 9 C -0.124 4.124 10 C -0.087 4.087 11 H 0.085 0.915 12 C -0.123 4.123 13 C 0.121 3.879 14 N -0.741 5.741 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.038 3.962 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.046 0.954 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.721 0.036 -25.386 33.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.051 3.949 3 H 0.099 0.901 4 F -0.195 7.195 5 C -0.180 4.180 6 C -0.086 4.086 7 N -0.234 5.234 8 C -0.097 4.097 9 C -0.162 4.162 10 C -0.107 4.107 11 H 0.104 0.896 12 C -0.162 4.162 13 C -0.003 4.003 14 N -0.395 5.395 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.090 4.090 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.814 -1.797 -23.876 33.072 hybrid contribution 2.123 2.666 -1.242 3.627 sum -20.691 0.869 -25.118 32.554 Atomic orbital electron populations 1.22369 0.94154 1.03756 1.03472 1.21565 0.94939 0.96138 0.82238 0.90132 1.92822 1.90264 1.83377 1.53081 1.22175 0.95799 1.02777 0.97225 1.22261 0.95185 0.96841 0.94274 1.65371 1.09070 1.47388 1.01600 1.23164 1.00055 0.96025 0.90487 1.22458 0.94912 1.01513 0.97361 1.21813 0.94081 1.00854 0.93947 0.89610 1.21868 0.97833 1.00485 0.95973 1.21296 0.87884 0.96546 0.94598 1.46019 1.30761 1.48922 1.13809 1.20310 0.84973 0.81889 0.81177 1.90703 1.60554 1.38582 1.49369 1.23532 0.97387 1.02248 1.07258 1.85401 1.35770 1.60600 1.01631 1.22871 1.13951 1.30778 1.00823 0.90943 1.24987 0.97894 0.95874 0.94792 1.70021 1.39530 1.38373 1.02361 0.86168 0.81238 0.79964 0.78131 1.20278 1.20732 1.19707 1.23160 0.87972 1.00993 0.96864 0.90642 0.91403 0.91256 0.89727 0.90117 0.94465 0.90190 0.90156 0.93835 0.90631 0.90667 0.91339 0.90997 0.91619 0.91532 0.76923 0.89246 0.89277 0.92182 0.93542 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 9.65 37.16 0.36 -0.34 16 2 C 0.09 0.45 3.96 -26.73 -0.11 0.35 16 3 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 4 F -0.21 -1.74 16.76 2.25 0.04 -1.70 16 5 C -0.14 -0.76 5.04 -26.73 -0.13 -0.89 16 6 C 0.04 0.28 4.72 -3.82 -0.02 0.26 16 7 N -0.51 -3.79 5.37 -229.97 -1.24 -5.03 16 8 C 0.03 0.21 5.73 -2.18 -0.01 0.20 16 9 C -0.12 -0.92 6.14 -25.35 -0.16 -1.08 16 10 C -0.09 -0.64 3.09 -89.24 -0.28 -0.92 16 11 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.12 -0.93 4.52 -26.73 -0.12 -1.06 16 13 C 0.12 1.35 5.50 -4.04 -0.02 1.33 16 14 N -0.74 -9.73 5.56 -60.29 -0.33 -10.06 16 15 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 16 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 17 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.04 0.27 6.03 -2.18 -0.01 0.25 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.08 0.36 7.26 -51.93 -0.38 -0.01 16 33 H 0.04 0.23 7.88 -51.93 -0.41 -0.18 16 34 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 35 H 0.08 0.51 7.76 -51.93 -0.40 0.10 16 36 H 0.04 0.29 7.83 -51.93 -0.41 -0.12 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.58 6.84 -51.93 -0.36 0.22 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.81 6.93 -51.93 -0.36 0.45 16 43 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.05 0.31 7.72 -51.93 -0.40 -0.09 16 48 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -34.62 402.18 -10.56 -45.18 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.51 Total: -1.77 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.17 Total: -7.93 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.84 Total: -40.56 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.62 -10.56 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664695997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.191 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds