Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 F 1.39891 * 109.47546 * 239.99738 * 2 1 3 5 5 C 1.53006 * 109.47082 * 119.98961 * 2 1 3 6 6 C 1.52997 * 109.47105 * 185.00229 * 5 2 1 7 7 N 1.46906 * 109.47260 * 180.02562 * 6 5 2 8 8 C 1.48551 * 110.99827 * 290.12979 * 7 6 5 9 9 C 1.54384 * 104.59579 * 200.95837 * 8 7 6 10 10 C 1.54262 * 105.05807 * 23.84900 * 9 8 7 11 11 H 1.08996 * 110.32542 * 241.00588 * 10 9 8 12 12 C 1.52996 * 110.32236 * 118.89613 * 10 9 8 13 13 C 1.53002 * 109.46969 * 66.45415 * 12 10 9 14 14 N 1.46506 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00137 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47228 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99904 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99962 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99837 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47243 * 90.00026 * 23 21 19 25 25 H 1.48497 * 109.47112 * 209.99962 * 23 21 19 26 26 H 1.48504 * 109.47161 * 329.99868 * 23 21 19 27 27 C 1.48554 * 110.99959 * 174.70910 * 7 6 5 28 28 H 1.09000 * 109.47408 * 300.00427 * 1 2 3 29 29 H 1.08996 * 109.47121 * 60.01055 * 1 2 3 30 30 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46595 * 65.00573 * 5 2 1 32 32 H 1.08997 * 109.47177 * 305.00805 * 5 2 1 33 33 H 1.08995 * 109.47168 * 60.00371 * 6 5 2 34 34 H 1.09003 * 109.47480 * 300.00771 * 6 5 2 35 35 H 1.08999 * 110.41817 * 82.17704 * 8 7 6 36 36 H 1.09003 * 110.51554 * 319.78694 * 8 7 6 37 37 H 1.09001 * 110.32006 * 264.95633 * 9 8 7 38 38 H 1.08993 * 110.32659 * 142.75026 * 9 8 7 39 39 H 1.09004 * 109.47298 * 306.45635 * 12 10 9 40 40 H 1.09004 * 109.47552 * 186.45507 * 12 10 9 41 41 H 1.09004 * 109.46930 * 59.99996 * 13 12 10 42 42 H 1.09000 * 109.47312 * 299.99939 * 13 12 10 43 43 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 44 44 H 1.09000 * 109.46978 * 300.00347 * 17 15 14 45 45 H 1.08996 * 109.47197 * 59.99985 * 17 15 14 46 46 H 0.97002 * 119.99547 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.41199 * 40.26014 * 27 7 6 48 48 H 1.09008 * 110.41110 * 277.81416 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1421 5 6 2.0400 -0.7211 1.2494 6 6 3.5648 -0.6130 1.3139 7 7 4.0546 -1.3059 2.5132 8 6 3.6767 -0.5679 3.7458 9 6 4.6683 -1.0683 4.8181 10 6 5.8938 -1.5708 4.0274 11 1 6.0550 -2.6326 4.2134 12 6 7.1393 -0.7698 4.4120 13 6 7.5030 -1.0610 5.8694 14 7 8.6960 -0.2944 6.2375 15 6 9.2026 -0.3930 7.4825 16 8 8.6712 -1.1166 8.2980 17 6 10.4294 0.3959 7.8615 18 16 10.8597 0.0513 9.5855 19 6 12.2845 1.0740 9.7555 20 1 12.6285 1.6642 8.9191 21 6 12.9641 1.1218 10.9647 22 7 12.5446 0.4027 11.9844 23 14 14.4741 2.2064 11.1452 24 1 14.0618 3.5560 11.6077 25 1 15.4002 1.6045 12.1379 26 1 15.1609 2.3211 9.8336 27 6 5.5396 -1.3317 2.5439 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5136 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2058 32 1 1.6053 -0.2615 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9995 -1.0726 0.4262 35 1 2.6530 -0.8073 4.0335 36 1 3.7876 0.5062 3.5972 37 1 4.2268 -1.8839 5.3908 38 1 4.9541 -0.2510 5.4803 39 1 6.9376 0.2948 4.2937 40 1 7.9694 -1.0563 3.7662 41 1 7.7047 -2.1256 5.9878 42 1 6.6730 -0.7745 6.5152 43 1 9.1208 0.2845 5.5855 44 1 11.2595 0.1091 7.2158 45 1 10.2279 1.4604 7.7427 46 1 13.0198 0.4359 12.8294 47 1 5.9435 -0.3775 2.2056 48 1 5.9185 -2.1463 1.9266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664695997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -132.772099 kcal Electronic energy + Delta-G solvation = -25004.583419 eV Core-core repulsion = 21132.926385 eV Total energy + Delta-G solvation = -3871.657034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.59414 -40.73432 -40.11497 -36.86740 -35.45379 -34.58298 -33.62046 -31.61904 -30.46908 -29.65608 -27.91188 -27.51425 -24.38243 -23.85725 -22.30860 -21.99822 -21.63099 -20.60762 -19.77845 -17.79958 -17.64037 -17.33152 -17.13276 -16.87565 -16.85419 -16.55070 -16.12891 -15.85641 -15.54907 -15.30898 -15.14083 -14.80881 -14.53116 -14.42070 -13.97853 -13.65923 -13.58202 -13.29765 -13.17120 -13.16358 -13.07009 -12.94385 -12.88351 -12.60995 -12.58755 -12.47990 -11.93715 -11.88749 -11.72478 -11.63047 -11.52678 -11.49172 -11.38139 -11.14031 -10.93068 -10.27386 -10.09948 -9.46508 -8.66728 -8.34433 -6.12749 1.27552 1.42889 1.47732 1.58114 1.61905 2.26443 2.30865 2.93430 2.99860 3.32772 3.53270 3.67300 3.74542 3.82867 3.85876 3.93563 3.99727 4.02004 4.15853 4.23849 4.31503 4.32920 4.37353 4.42180 4.51293 4.55660 4.59730 4.64088 4.72328 4.73893 4.80231 4.87223 4.91181 4.99899 5.03039 5.12547 5.16399 5.20434 5.26443 5.30409 5.39134 5.42025 5.46569 5.88223 6.06306 6.20046 6.52438 7.06906 7.25944 8.74871 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.039010 B = 0.001420 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.587268 B =19715.585570 C =19918.386610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 H 0.095 0.905 4 F -0.233 7.233 5 C -0.135 4.135 6 C 0.044 3.956 7 N -0.524 5.524 8 C 0.034 3.966 9 C -0.126 4.126 10 C -0.085 4.085 11 H 0.079 0.921 12 C -0.108 4.108 13 C 0.120 3.880 14 N -0.713 5.713 15 C 0.531 3.469 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.154 6.154 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 C 0.040 3.960 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.417 0.583 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.054 0.946 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.417 1.868 -27.438 34.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.113 0.887 4 F -0.215 7.215 5 C -0.173 4.173 6 C -0.084 4.084 7 N -0.248 5.248 8 C -0.094 4.094 9 C -0.164 4.164 10 C -0.104 4.104 11 H 0.097 0.903 12 C -0.146 4.146 13 C -0.004 4.004 14 N -0.367 5.367 15 C 0.317 3.683 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.073 5.927 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 C -0.087 4.087 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.254 0.746 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.523 0.054 -25.999 34.398 hybrid contribution 1.928 2.061 -0.705 2.909 sum -20.595 2.116 -26.704 33.790 Atomic orbital electron populations 1.22365 0.93161 1.03703 1.04333 1.21771 0.95791 0.96535 0.81268 0.88734 1.92784 1.90588 1.83860 1.54226 1.22115 0.95189 1.02194 0.97836 1.22252 0.95729 0.96967 0.93466 1.65373 1.09336 1.47982 1.02101 1.23148 1.00042 0.96259 0.89948 1.22455 0.95233 1.01215 0.97530 1.21763 0.93883 1.00423 0.94355 0.90290 1.21763 0.98329 1.01298 0.93245 1.21433 0.86488 0.95540 0.96892 1.45772 1.30619 1.48234 1.12100 1.20094 0.84512 0.81293 0.82416 1.90692 1.61890 1.40790 1.51264 1.23377 0.98886 1.03799 1.02021 1.85594 1.36699 1.61713 1.08647 1.23213 1.13985 1.30776 1.01512 0.89870 1.26125 1.01437 0.97277 0.94241 1.70188 1.41311 1.40239 1.03070 0.84949 0.76605 0.77744 0.78652 1.19287 1.20317 1.18176 1.23135 0.87915 1.01398 0.96302 0.89126 0.91217 0.91784 0.90952 0.88961 0.93764 0.91166 0.89772 0.93194 0.91361 0.90886 0.90042 0.89612 0.92793 0.92393 0.74625 0.87190 0.87135 0.91995 0.92771 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.65 71.98 0.69 -0.45 16 2 C 0.08 0.75 3.96 30.60 0.12 0.87 16 3 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 4 F -0.23 -3.67 16.76 44.97 0.75 -2.91 16 5 C -0.14 -1.28 5.04 30.60 0.15 -1.13 16 6 C 0.04 0.51 4.72 86.30 0.41 0.91 16 7 N -0.52 -7.02 5.37 -881.50 -4.73 -11.75 16 8 C 0.03 0.40 5.73 86.45 0.50 0.90 16 9 C -0.13 -1.73 6.14 31.49 0.19 -1.53 16 10 C -0.08 -1.10 3.09 -9.90 -0.03 -1.14 16 11 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 12 C -0.11 -1.37 4.52 30.59 0.14 -1.23 16 13 C 0.12 2.51 5.50 86.38 0.47 2.99 16 14 N -0.71 -17.24 5.56 -463.04 -2.57 -19.81 16 15 C 0.53 19.46 7.85 87.66 0.69 20.15 16 16 O -0.57 -26.49 15.86 -3.04 -0.05 -26.54 16 17 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 23 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 C 0.04 0.49 6.03 86.45 0.52 1.01 16 28 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.09 0.66 7.26 -2.39 -0.02 0.64 16 33 H 0.04 0.45 7.88 -2.39 -0.02 0.43 16 34 H 0.07 0.94 7.92 -2.39 -0.02 0.92 16 35 H 0.08 0.94 7.76 -2.39 -0.02 0.92 16 36 H 0.05 0.54 7.83 -2.39 -0.02 0.52 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.03 6.84 -2.39 -0.02 1.01 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.06 1.36 6.93 -2.39 -0.02 1.34 16 43 H 0.42 6.96 8.47 -92.71 -0.79 6.18 16 44 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 45 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.05 0.58 7.72 -2.39 -0.02 0.57 16 48 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -77.08 402.18 0.10 -76.98 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.15 Total: 16.68 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 5.41 Total: -12.58 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -7.02 Total: -87.34 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.75 Total: -2.91 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -77.08 0.10 -76.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664695997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.795 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds