Wall clock time and date at job start Tue Mar 31 2020 17:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46637 * 2 1 4 4 F 1.39893 * 109.47439 * 240.00154 * 2 1 3 5 5 C 1.52995 * 109.47221 * 119.99679 * 2 1 3 6 6 C 1.53001 * 109.47068 * 185.00396 * 5 2 1 7 7 N 1.46903 * 109.47074 * 180.02562 * 6 5 2 8 8 C 1.46900 * 111.00036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47305 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47158 * 180.02562 * 9 8 7 11 11 H 1.09004 * 110.91452 * 302.54698 * 10 9 8 12 12 C 1.55448 * 111.11787 * 178.55854 * 10 9 8 13 13 C 1.54321 * 102.96961 * 206.45980 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34780 * 125.64285 * 181.07596 * 14 13 12 16 16 O 1.21287 * 119.99688 * 179.97438 * 15 14 13 17 17 C 1.50698 * 120.00303 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47052 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99912 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99776 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99834 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46868 * 59.99511 * 23 21 19 25 25 H 1.48495 * 109.47082 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46968 * 299.99764 * 23 21 19 27 27 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 28 28 H 1.08997 * 109.47479 * 299.99891 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00381 * 1 2 3 30 30 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47391 * 65.00624 * 5 2 1 32 32 H 1.09003 * 109.47308 * 305.00452 * 5 2 1 33 33 H 1.09001 * 109.47321 * 60.00469 * 6 5 2 34 34 H 1.09003 * 109.47102 * 300.00182 * 6 5 2 35 35 H 1.00900 * 111.00107 * 303.94795 * 7 6 5 36 36 H 1.09004 * 109.47035 * 59.99920 * 8 7 6 37 37 H 1.08993 * 109.47526 * 300.00214 * 8 7 6 38 38 H 1.08997 * 109.47339 * 60.00233 * 9 8 7 39 39 H 1.09005 * 109.47071 * 300.00161 * 9 8 7 40 40 H 1.08998 * 110.70855 * 88.08785 * 12 10 9 41 41 H 1.08998 * 110.85957 * 324.90400 * 12 10 9 42 42 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 43 43 H 1.09000 * 109.88483 * 141.60664 * 13 12 10 44 44 H 1.09004 * 109.47049 * 299.99920 * 17 15 14 45 45 H 1.08999 * 109.47179 * 59.99802 * 17 15 14 46 46 H 0.97002 * 120.00358 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.36926 * 94.70918 * 27 14 13 48 48 H 1.08995 * 110.36556 * 216.92202 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 9 1.9964 -0.6594 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5648 -0.6131 1.3137 7 7 4.0546 -1.3060 2.5129 8 6 5.5182 -1.2234 2.6078 9 6 5.9897 -1.9542 3.8665 10 6 7.5140 -1.8676 3.9657 11 1 7.9862 -2.2851 3.0763 12 6 8.0322 -2.5683 5.2529 13 6 9.3576 -1.8313 5.5388 14 7 9.2842 -0.5251 4.8678 15 6 10.2551 0.4097 4.8602 16 8 10.0850 1.4559 4.2707 17 6 11.5520 0.1549 5.5841 18 16 12.6431 1.5859 5.3889 19 6 14.0420 1.0313 6.3056 20 1 14.0289 0.0588 6.7750 21 6 15.1602 1.8448 6.4251 22 7 15.1758 3.0303 5.8534 23 14 16.6436 1.2566 7.3964 24 1 17.1708 0.0090 6.7875 25 1 17.6974 2.3025 7.3722 26 1 16.2418 0.9905 8.8009 27 6 7.9729 -0.4074 4.2044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9995 -1.0726 0.4259 35 1 3.6168 -0.9411 3.3455 36 1 5.8204 -0.1775 2.6606 37 1 5.9660 -1.6870 1.7289 38 1 5.6875 -3.0001 3.8142 39 1 5.5418 -1.4901 4.7453 40 1 8.2119 -3.6276 5.0693 41 1 7.3311 -2.4346 6.0766 42 1 10.1944 -2.4057 5.1413 43 1 9.4790 -1.6900 6.6127 44 1 11.3512 -0.0075 6.6431 45 1 12.0341 -0.7287 5.1660 46 1 15.9575 3.5987 5.9366 47 1 7.2657 0.1116 4.8513 48 1 8.0740 0.1184 3.2551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717073138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:07 Heat of formation + Delta-G solvation = -109.192615 kcal Electronic energy + Delta-G solvation = -25114.806794 eV Core-core repulsion = 21244.172243 eV Total energy + Delta-G solvation = -3870.634551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.02688 -39.89075 -37.89209 -36.93769 -34.55265 -32.83981 -32.42584 -30.53096 -29.59783 -28.81885 -26.62544 -25.46622 -23.96081 -23.01145 -22.15122 -21.57367 -20.42561 -19.31077 -17.70416 -17.27581 -16.59912 -16.51283 -16.15203 -15.99263 -15.57101 -15.21488 -14.80332 -14.58937 -14.49729 -14.18592 -14.02767 -13.84572 -13.45880 -13.24216 -13.17026 -12.80764 -12.67063 -12.63178 -12.48704 -12.33234 -12.27326 -11.79542 -11.69089 -11.50474 -11.37363 -11.18993 -11.04183 -11.03720 -10.95284 -10.86266 -10.76219 -10.75139 -9.81986 -9.40099 -9.05581 -8.86336 -8.48430 -8.23471 -6.50030 -6.21043 -3.91941 2.93310 3.07322 3.23719 3.26280 3.29546 3.52143 3.64239 4.15729 4.18560 4.21181 4.25045 4.30505 4.42345 4.47066 4.52849 4.75789 4.82303 4.92199 4.94221 5.06029 5.11232 5.13169 5.14048 5.17679 5.19203 5.25540 5.36925 5.41527 5.49135 5.51294 5.57582 5.59470 5.66203 5.68757 5.72853 5.73576 5.80869 5.86647 5.97433 6.07114 6.14918 6.45280 6.56445 6.94221 7.59453 7.69348 8.35395 8.56883 9.23937 10.86351 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.001600 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.373236 B =17500.840105 C =18318.188281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.082 0.918 4 F -0.214 7.214 5 C -0.145 4.145 6 C 0.055 3.945 7 N -0.691 5.691 8 C 0.054 3.946 9 C -0.103 4.103 10 C -0.101 4.101 11 H 0.087 0.913 12 C -0.125 4.125 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.518 6.518 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.112 3.888 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.339 0.661 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.063 0.937 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.090 -12.299 -5.890 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.051 3.949 3 H 0.100 0.900 4 F -0.195 7.195 5 C -0.183 4.183 6 C -0.074 4.074 7 N -0.321 5.321 8 C -0.075 4.075 9 C -0.141 4.141 10 C -0.121 4.121 11 H 0.105 0.895 12 C -0.163 4.163 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.392 6.392 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.011 4.011 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.132 -11.131 -7.129 31.082 hybrid contribution 1.331 -0.701 1.573 2.177 sum -26.801 -11.832 -5.556 29.819 Atomic orbital electron populations 1.22372 0.94198 1.03689 1.03492 1.21548 0.94874 0.96249 0.82217 0.89993 1.92827 1.90261 1.83359 1.53035 1.22192 0.96025 1.02722 0.97351 1.21963 0.94425 0.96599 0.94426 1.60459 1.06207 1.60202 1.05237 1.22039 0.87341 0.99056 0.99026 1.21468 0.93471 1.01785 0.97356 1.22421 0.95558 0.95375 0.98728 0.89492 1.22725 0.96195 0.99718 0.97637 1.21999 0.98325 0.84174 0.97742 1.48510 1.15957 1.17588 1.54396 1.20035 0.83812 0.82321 0.80202 1.90704 1.80041 1.24979 1.43467 1.23505 0.96553 1.07280 1.02355 1.85390 1.10851 1.17030 1.70201 1.22821 1.01582 1.05769 1.38232 0.90988 1.24985 0.98299 0.94558 0.95669 1.70007 1.30026 1.08664 1.41595 0.86224 0.80820 0.78448 0.80009 1.19931 1.20792 1.19936 1.22214 0.84594 0.96301 0.97987 0.90659 0.91379 0.91307 0.89755 0.90208 0.94924 0.90369 0.84313 0.94654 0.90743 0.90464 0.91657 0.89969 0.90462 0.91294 0.91317 0.89332 0.89314 0.92127 0.91925 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.74 9.65 37.16 0.36 -0.38 16 2 C 0.09 0.49 3.96 -26.74 -0.11 0.39 16 3 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 4 F -0.21 -1.88 16.76 2.25 0.04 -1.84 16 5 C -0.14 -0.76 5.24 -26.73 -0.14 -0.90 16 6 C 0.06 0.37 5.60 -3.82 -0.02 0.35 16 7 N -0.69 -4.76 6.50 -113.78 -0.74 -5.50 16 8 C 0.05 0.40 5.54 -3.83 -0.02 0.38 16 9 C -0.10 -0.69 5.01 -26.73 -0.13 -0.82 16 10 C -0.10 -0.84 3.08 -88.31 -0.27 -1.12 16 11 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 12 C -0.12 -0.96 6.43 -24.74 -0.16 -1.12 16 13 C 0.10 1.10 6.49 -3.06 -0.02 1.08 16 14 N -0.63 -9.29 3.33 -170.53 -0.57 -9.86 16 15 C 0.55 10.90 7.87 -10.98 -0.09 10.81 16 16 O -0.52 -12.32 16.12 5.55 0.09 -12.23 16 17 C -0.15 -3.08 5.35 36.00 0.19 -2.88 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.11 1.34 5.56 -2.53 -0.01 1.33 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.34 1.94 8.73 -39.29 -0.34 1.60 16 36 H 0.04 0.29 7.45 -51.93 -0.39 -0.10 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 48 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -34.95 406.60 -10.47 -45.42 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.70 Total: -3.10 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.23 Total: -5.97 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.57 Total: -40.95 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.95 -10.47 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717073138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.769 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds