Wall clock time and date at job start Tue Mar 31 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46637 * 2 1 4 4 F 1.39893 * 109.47439 * 240.00154 * 2 1 3 5 5 C 1.52995 * 109.47221 * 119.99679 * 2 1 3 6 6 C 1.53001 * 109.47068 * 185.00396 * 5 2 1 7 7 N 1.46903 * 109.47074 * 180.02562 * 6 5 2 8 8 C 1.46900 * 111.00036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47305 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47158 * 180.02562 * 9 8 7 11 11 H 1.09004 * 110.91452 * 302.54698 * 10 9 8 12 12 C 1.55448 * 111.11787 * 178.55854 * 10 9 8 13 13 C 1.54321 * 102.96961 * 206.45980 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34780 * 125.64285 * 181.07596 * 14 13 12 16 16 O 1.21287 * 119.99688 * 179.97438 * 15 14 13 17 17 C 1.50698 * 120.00303 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47052 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99912 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99776 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99834 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46868 * 59.99511 * 23 21 19 25 25 H 1.48495 * 109.47082 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46968 * 299.99764 * 23 21 19 27 27 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 28 28 H 1.08997 * 109.47479 * 299.99891 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00381 * 1 2 3 30 30 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47391 * 65.00624 * 5 2 1 32 32 H 1.09003 * 109.47308 * 305.00452 * 5 2 1 33 33 H 1.09001 * 109.47321 * 60.00469 * 6 5 2 34 34 H 1.09003 * 109.47102 * 300.00182 * 6 5 2 35 35 H 1.00900 * 111.00107 * 303.94795 * 7 6 5 36 36 H 1.09004 * 109.47035 * 59.99920 * 8 7 6 37 37 H 1.08993 * 109.47526 * 300.00214 * 8 7 6 38 38 H 1.08997 * 109.47339 * 60.00233 * 9 8 7 39 39 H 1.09005 * 109.47071 * 300.00161 * 9 8 7 40 40 H 1.08998 * 110.70855 * 88.08785 * 12 10 9 41 41 H 1.08998 * 110.85957 * 324.90400 * 12 10 9 42 42 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 43 43 H 1.09000 * 109.88483 * 141.60664 * 13 12 10 44 44 H 1.09004 * 109.47049 * 299.99920 * 17 15 14 45 45 H 1.08999 * 109.47179 * 59.99802 * 17 15 14 46 46 H 0.97002 * 120.00358 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.36926 * 94.70918 * 27 14 13 48 48 H 1.08995 * 110.36556 * 216.92202 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 9 1.9964 -0.6594 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5648 -0.6131 1.3137 7 7 4.0546 -1.3060 2.5129 8 6 5.5182 -1.2234 2.6078 9 6 5.9897 -1.9542 3.8665 10 6 7.5140 -1.8676 3.9657 11 1 7.9862 -2.2851 3.0763 12 6 8.0322 -2.5683 5.2529 13 6 9.3576 -1.8313 5.5388 14 7 9.2842 -0.5251 4.8678 15 6 10.2551 0.4097 4.8602 16 8 10.0850 1.4559 4.2707 17 6 11.5520 0.1549 5.5841 18 16 12.6431 1.5859 5.3889 19 6 14.0420 1.0313 6.3056 20 1 14.0289 0.0588 6.7750 21 6 15.1602 1.8448 6.4251 22 7 15.1758 3.0303 5.8534 23 14 16.6436 1.2566 7.3964 24 1 17.1708 0.0090 6.7875 25 1 17.6974 2.3025 7.3722 26 1 16.2418 0.9905 8.8009 27 6 7.9729 -0.4074 4.2044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7714 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8531 0.4372 1.3574 34 1 3.9995 -1.0726 0.4259 35 1 3.6168 -0.9411 3.3455 36 1 5.8204 -0.1775 2.6606 37 1 5.9660 -1.6870 1.7289 38 1 5.6875 -3.0001 3.8142 39 1 5.5418 -1.4901 4.7453 40 1 8.2119 -3.6276 5.0693 41 1 7.3311 -2.4346 6.0766 42 1 10.1944 -2.4057 5.1413 43 1 9.4790 -1.6900 6.6127 44 1 11.3512 -0.0075 6.6431 45 1 12.0341 -0.7287 5.1660 46 1 15.9575 3.5987 5.9366 47 1 7.2657 0.1116 4.8513 48 1 8.0740 0.1184 3.2551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717073138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:06 Heat of formation + Delta-G solvation = -131.986834 kcal Electronic energy + Delta-G solvation = -25115.795226 eV Core-core repulsion = 21244.172243 eV Total energy + Delta-G solvation = -3871.622982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.60272 -41.09784 -38.96093 -37.71529 -35.20115 -34.60298 -33.65556 -31.44493 -30.83155 -29.57915 -27.79586 -27.31438 -24.86456 -23.60627 -22.82565 -22.07898 -21.16122 -20.70868 -19.57658 -18.07756 -17.77556 -17.53041 -16.89641 -16.81823 -16.63504 -16.44288 -16.16723 -15.91318 -15.57248 -15.20187 -14.89950 -14.70249 -14.54239 -14.33275 -14.00393 -13.86220 -13.64054 -13.52682 -13.20603 -13.16640 -13.11833 -13.05432 -12.87279 -12.84222 -12.64419 -12.24534 -12.12778 -11.93264 -11.78261 -11.66667 -11.59299 -11.50161 -11.34889 -11.14119 -11.00348 -10.31588 -9.71737 -9.43748 -8.70766 -8.35790 -6.15436 1.22423 1.43637 1.44051 1.52176 1.54596 2.08743 2.26218 2.98246 2.99191 3.22220 3.47514 3.64835 3.75508 3.77359 3.85845 3.87394 3.93638 4.00915 4.16487 4.26706 4.28281 4.31821 4.40119 4.40684 4.45683 4.46963 4.58354 4.61466 4.67609 4.77273 4.79526 4.87688 4.91681 4.94769 5.06508 5.11089 5.14270 5.20778 5.25644 5.29698 5.36305 5.39603 5.45394 5.98492 6.17985 6.36939 6.46030 7.04846 7.07771 8.73350 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.001600 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.373236 B =17500.840105 C =18318.188281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.090 0.910 4 F -0.235 7.235 5 C -0.136 4.136 6 C 0.055 3.945 7 N -0.690 5.690 8 C 0.055 3.945 9 C -0.091 4.091 10 C -0.088 4.088 11 H 0.085 0.915 12 C -0.112 4.112 13 C 0.087 3.913 14 N -0.619 5.619 15 C 0.543 3.457 16 O -0.571 6.571 17 C -0.119 4.119 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.261 1.261 27 C 0.105 3.895 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.060 0.940 35 H 0.349 0.651 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.272 0.728 47 H 0.070 0.930 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.175 -15.021 -4.105 33.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 H 0.108 0.892 4 F -0.216 7.216 5 C -0.174 4.174 6 C -0.074 4.074 7 N -0.321 5.321 8 C -0.074 4.074 9 C -0.129 4.129 10 C -0.108 4.108 11 H 0.104 0.896 12 C -0.149 4.149 13 C -0.035 4.035 14 N -0.353 5.353 15 C 0.331 3.669 16 O -0.450 6.450 17 C -0.270 4.270 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.017 4.017 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.266 -13.914 -5.332 32.841 hybrid contribution 1.539 0.096 0.983 1.828 sum -27.728 -13.818 -4.349 31.284 Atomic orbital electron populations 1.22357 0.92847 1.03846 1.04356 1.21805 0.96017 0.96474 0.81459 0.89195 1.92784 1.90647 1.83840 1.54357 1.22123 0.94774 1.02500 0.97982 1.21939 0.95519 0.96206 0.93782 1.60448 1.05801 1.60257 1.05633 1.22003 0.87816 0.98356 0.99267 1.21378 0.91941 1.02431 0.97114 1.22359 0.96707 0.92426 0.99325 0.89628 1.22746 0.94383 1.00428 0.97384 1.22402 1.00774 0.82356 0.97937 1.48502 1.15572 1.17821 1.53432 1.19819 0.84421 0.82636 0.79995 1.90680 1.81048 1.27366 1.45873 1.23296 0.95838 1.04051 1.03811 1.85588 1.13519 1.22416 1.71018 1.23160 1.01800 1.06312 1.38296 0.89887 1.26148 1.01811 0.94476 0.96607 1.70179 1.31159 1.10218 1.43205 0.84982 0.76124 0.78184 0.78570 1.18607 1.20315 1.18548 1.22453 0.83297 0.99059 0.96877 0.88893 0.91450 0.91495 0.90381 0.88235 0.95140 0.92191 0.83293 0.95964 0.91677 0.89177 0.90636 0.87410 0.88799 0.90624 0.90406 0.87552 0.87631 0.91939 0.91215 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.65 71.98 0.69 -0.53 16 2 C 0.08 0.83 3.96 30.59 0.12 0.95 16 3 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 4 F -0.23 -4.19 16.76 44.97 0.75 -3.43 16 5 C -0.14 -1.28 5.24 30.59 0.16 -1.12 16 6 C 0.05 0.72 5.60 86.30 0.48 1.21 16 7 N -0.69 -8.59 6.50 -513.88 -3.34 -11.93 16 8 C 0.05 0.76 5.54 86.30 0.48 1.24 16 9 C -0.09 -0.97 5.01 30.59 0.15 -0.81 16 10 C -0.09 -1.26 3.08 -9.30 -0.03 -1.29 16 11 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 12 C -0.11 -1.28 6.43 31.88 0.21 -1.07 16 13 C 0.09 1.65 6.49 86.73 0.56 2.21 16 14 N -0.62 -17.72 3.33 -811.81 -2.70 -20.42 16 15 C 0.54 21.86 7.87 87.66 0.69 22.55 16 16 O -0.57 -28.37 16.12 -3.05 -0.05 -28.42 16 17 C -0.12 -4.99 5.35 71.24 0.38 -4.61 16 18 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 19 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.83 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 23 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 C 0.11 2.44 5.56 86.85 0.48 2.92 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 35 H 0.35 3.27 8.73 -89.69 -0.78 2.49 16 36 H 0.02 0.36 7.45 -2.38 -0.02 0.35 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.70 8.10 -2.38 -0.02 0.68 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.84 8.05 -2.39 -0.02 0.82 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 45 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 46 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.07 1.54 8.00 -2.39 -0.02 1.52 16 48 H 0.05 1.49 7.96 -2.39 -0.02 1.47 16 Total: -1.00 -79.52 406.60 1.45 -78.07 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.14 Total: 14.66 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.49 Total: -8.15 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -5.76 Total: -88.58 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -79.52 1.45 -78.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717073138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.913 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds