Wall clock time and date at job start Tue Mar 31 2020 16:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46895 * 109.46829 * 144.18721 * 3 2 1 5 5 C 1.46893 * 111.00599 * 69.27730 * 4 3 2 6 6 C 1.50691 * 109.47460 * 199.24763 * 5 4 3 7 7 O 1.21281 * 120.00126 * 5.30042 * 6 5 4 8 8 N 1.34785 * 120.00169 * 185.29417 * 6 5 4 9 9 C 1.46499 * 119.99767 * 0.02562 * 8 6 5 10 10 C 1.52997 * 109.47277 * 89.99634 * 9 8 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 8 6 5 12 12 C 1.50698 * 109.47147 * 90.00190 * 11 8 6 13 13 H 1.08003 * 120.00085 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00120 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47031 * 89.99910 * 16 14 12 18 18 H 1.48498 * 109.46803 * 209.99878 * 16 14 12 19 19 H 1.48498 * 109.47014 * 329.99859 * 16 14 12 20 20 C 1.46909 * 110.99776 * 193.23654 * 4 3 2 21 21 C 1.50697 * 109.47282 * 66.04102 * 20 4 3 22 22 C 1.38247 * 119.97738 * 270.32433 * 21 20 4 23 23 C 1.38195 * 120.02609 * 180.27934 * 22 21 20 24 24 C 1.38458 * 119.97403 * 359.41777 * 23 22 21 25 25 F 1.35098 * 120.02425 * 180.29759 * 24 23 22 26 26 C 1.38459 * 119.94682 * 0.28352 * 24 23 22 27 27 C 1.38195 * 119.97791 * 359.97438 * 26 24 23 28 28 H 4.40883 * 5.52200 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47107 * 24.18037 * 3 2 1 30 30 H 1.09000 * 109.47029 * 264.18240 * 3 2 1 31 31 H 1.08999 * 109.47249 * 319.25546 * 5 4 3 32 32 H 1.09005 * 109.46778 * 79.25073 * 5 4 3 33 33 H 1.09005 * 109.46563 * 209.99945 * 9 8 6 34 34 H 1.09005 * 109.46936 * 329.99235 * 9 8 6 35 35 H 1.08993 * 109.47338 * 300.00012 * 10 9 8 36 36 H 1.08998 * 109.46830 * 60.00045 * 10 9 8 37 37 H 1.08999 * 109.46522 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46815 * 209.99947 * 11 8 6 39 39 H 1.09003 * 109.46740 * 330.00123 * 11 8 6 40 40 H 0.97008 * 120.00251 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.46790 * 306.04181 * 20 4 3 42 42 H 1.08993 * 109.46816 * 186.04443 * 20 4 3 43 43 H 1.08001 * 119.98245 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.01436 * 179.69882 * 23 22 21 45 45 H 1.08006 * 120.01002 * 180.02562 * 26 24 23 46 46 H 1.07997 * 119.98873 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.1240 -0.8104 5 6 2.8526 2.4081 -0.1554 6 6 2.9204 3.5170 -1.1735 7 8 3.0831 3.2544 -2.3463 8 7 2.8000 4.8007 -0.7808 9 6 2.6038 5.1180 0.6359 10 6 3.9645 5.3072 1.3093 11 6 2.8654 5.8788 -1.7707 12 6 1.4802 6.1708 -2.2876 13 1 0.6356 5.6098 -1.9156 14 6 1.2910 7.1548 -3.2346 15 7 2.3194 7.8383 -3.6872 16 14 -0.4261 7.5172 -3.8748 17 1 -1.0610 8.5578 -3.0268 18 1 -0.3396 8.0044 -5.2749 19 1 -1.2424 6.2775 -3.8315 20 6 4.5694 0.9825 -1.0951 21 6 4.7903 -0.2191 -1.9773 22 6 5.0096 -1.4610 -1.4109 23 6 5.2180 -2.5625 -2.2189 24 6 5.1952 -2.4242 -3.5964 25 9 5.3929 -3.5015 -4.3873 26 6 4.9694 -1.1811 -4.1626 27 6 4.7665 -0.0799 -3.3526 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.9367 -0.4209 30 1 3.0093 0.1050 1.0224 31 1 1.8560 2.3797 0.2852 32 1 3.5906 2.5872 0.6266 33 1 2.0231 6.0362 0.7255 34 1 2.0690 4.3011 1.1205 35 1 4.5451 4.3892 1.2197 36 1 4.4992 6.1241 0.8247 37 1 3.8184 5.5437 2.3633 38 1 3.2759 6.7748 -1.3054 39 1 3.5053 5.5734 -2.5986 40 1 2.1863 8.5304 -4.3537 41 1 5.1142 0.8519 -0.1601 42 1 4.9289 1.8773 -1.6031 43 1 5.0220 -1.5695 -0.3364 44 1 5.3941 -3.5317 -1.7762 45 1 4.9509 -1.0721 -5.2370 46 1 4.5899 0.8897 -3.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065957988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:34 Heat of formation + Delta-G solvation = 13.739484 kcal Electronic energy + Delta-G solvation = -28236.257801 eV Core-core repulsion = 24235.510034 eV Total energy + Delta-G solvation = -4000.747766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.97822 -39.84784 -38.91644 -37.00002 -35.16966 -33.11093 -32.79769 -31.32543 -31.23567 -30.09886 -28.65219 -27.18702 -26.33882 -23.62471 -23.10710 -22.99125 -22.11049 -21.12049 -18.40970 -18.21789 -17.71952 -16.74053 -16.41068 -16.28292 -16.16486 -15.94304 -15.64179 -14.93591 -14.77540 -14.52221 -14.30477 -14.03294 -13.80995 -13.65468 -13.38416 -13.36816 -12.92295 -12.78060 -12.70046 -12.21379 -12.19037 -12.00204 -11.70632 -11.50450 -11.35020 -11.17465 -11.02317 -10.90013 -10.73298 -10.52885 -10.42068 -10.17623 -10.10395 -9.60485 -9.17487 -8.95602 -8.66121 -8.41762 -8.25963 -7.62208 -6.02586 -4.06811 1.00631 1.15824 2.68979 2.87426 3.31129 3.37958 3.41003 3.44134 3.49265 3.81823 4.16360 4.25934 4.39960 4.47722 4.60488 4.69276 4.79274 5.01440 5.06992 5.14972 5.18424 5.27395 5.30907 5.33324 5.38596 5.50712 5.55705 5.63263 5.67769 5.75146 5.88115 5.93581 5.96370 6.00221 6.01430 6.20427 6.21746 6.45008 6.48885 6.77881 6.83271 6.94586 7.13206 7.46168 7.58709 7.66124 7.94567 8.26162 8.46463 8.93554 9.16555 9.58507 11.05364 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.003124 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.076809 B = 8959.657654 C = 9720.057410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C 0.157 3.843 4 N -0.510 5.510 5 C 0.036 3.964 6 C 0.507 3.493 7 O -0.520 6.520 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.168 4.168 11 C 0.249 3.751 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.097 3.903 21 C -0.083 4.083 22 C -0.092 4.092 23 C -0.159 4.159 24 C 0.093 3.907 25 F -0.144 7.144 26 C -0.154 4.154 27 C -0.056 4.056 28 H 0.216 0.784 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -17.225 11.017 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.031 3.969 4 N -0.234 5.234 5 C -0.095 4.095 6 C 0.292 3.708 7 O -0.396 6.396 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.227 4.227 11 C 0.130 3.870 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.029 4.029 21 C -0.084 4.084 22 C -0.111 4.111 23 C -0.177 4.177 24 C 0.074 3.926 25 F -0.123 7.123 26 C -0.173 4.173 27 C -0.075 4.075 28 H 0.233 0.767 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.449 -17.232 9.768 20.543 hybrid contribution -0.848 0.158 0.266 0.902 sum 4.601 -17.074 10.034 20.331 Atomic orbital electron populations 1.24886 0.95895 0.99747 1.00727 1.22758 0.94127 1.00943 1.00299 1.19145 0.85537 0.96000 0.96212 1.61454 1.15760 1.00362 1.45840 1.22147 1.02714 0.89160 0.95468 1.20077 0.78151 0.83237 0.89333 1.90654 1.48190 1.82643 1.18073 1.48271 1.70619 1.06808 1.07700 1.21387 0.96433 1.01823 0.82139 1.22222 0.98382 1.01991 1.00085 1.19224 0.97558 0.83387 0.86830 1.21444 0.93432 1.18341 1.23078 0.92534 1.24919 0.97101 0.95948 0.96098 1.69929 1.29778 1.23351 1.30420 0.86524 0.84460 0.78433 0.78184 1.20706 1.21107 1.19883 1.21099 0.87318 0.97321 0.97212 1.19804 0.99799 0.94383 0.94414 1.20914 0.98907 0.91546 0.99703 1.21022 1.04750 1.00261 0.91713 1.17753 1.02736 0.83562 0.88585 1.91482 1.92672 1.53990 1.74143 1.21224 1.03328 0.91386 1.01318 1.21130 0.94510 0.99123 0.92712 0.76686 0.87995 0.92538 0.88332 0.92179 0.89959 0.92048 0.93273 0.91970 0.92237 0.95177 0.93952 0.92781 0.93789 0.88256 0.85307 0.85009 0.84722 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 19.25 29.55 0.57 -1.82 16 2 C -0.18 -2.38 12.42 -37.12 -0.46 -2.84 16 3 C 0.16 1.79 5.27 -6.61 -0.03 1.76 16 4 N -0.51 -7.16 3.99 -241.05 -0.96 -8.12 16 5 C 0.04 0.53 3.80 -4.98 -0.02 0.51 16 6 C 0.51 10.16 7.22 -10.99 -0.08 10.08 16 7 O -0.52 -12.59 15.04 5.56 0.08 -12.51 16 8 N -0.60 -12.29 2.46 -175.06 -0.43 -12.72 16 9 C 0.11 1.65 5.86 -4.04 -0.02 1.62 16 10 C -0.17 -2.13 10.19 37.16 0.38 -1.75 16 11 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 12 C -0.52 -14.80 9.39 -34.44 -0.32 -15.13 16 13 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.10 1.20 4.76 -4.97 -0.02 1.18 16 21 C -0.08 -0.99 4.93 -104.62 -0.52 -1.50 16 22 C -0.09 -0.89 7.84 -39.59 -0.31 -1.20 16 23 C -0.16 -1.59 10.03 -39.52 -0.40 -1.98 16 24 C 0.09 1.09 7.30 -39.42 -0.29 0.80 16 25 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 26 C -0.15 -1.85 10.03 -39.52 -0.40 -2.24 16 27 C -0.06 -0.73 9.70 -39.59 -0.38 -1.12 16 28 H 0.22 1.94 7.80 -54.08 -0.42 1.52 16 29 H 0.10 1.06 5.25 -51.93 -0.27 0.79 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.10 1.42 6.53 -51.93 -0.34 1.08 16 32 H 0.06 0.72 6.77 -51.93 -0.35 0.37 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.80 6.59 -51.93 -0.34 0.46 16 35 H 0.05 0.58 7.13 -51.93 -0.37 0.21 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 42 H 0.10 1.46 6.78 -51.93 -0.35 1.11 16 43 H 0.13 0.91 7.77 -52.49 -0.41 0.50 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 46 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -33.75 392.40 -8.65 -42.40 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.58 Total: 1.21 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.43 Total: -5.62 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.65 Total: -46.62 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.75 -8.65 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065957988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.141 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds