Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46895 * 109.46829 * 144.18721 * 3 2 1 5 5 C 1.46893 * 111.00599 * 69.27730 * 4 3 2 6 6 C 1.50691 * 109.47460 * 199.24763 * 5 4 3 7 7 O 1.21281 * 120.00126 * 5.30042 * 6 5 4 8 8 N 1.34785 * 120.00169 * 185.29417 * 6 5 4 9 9 C 1.46499 * 119.99767 * 0.02562 * 8 6 5 10 10 C 1.52997 * 109.47277 * 89.99634 * 9 8 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 8 6 5 12 12 C 1.50698 * 109.47147 * 90.00190 * 11 8 6 13 13 H 1.08003 * 120.00085 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00120 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47031 * 89.99910 * 16 14 12 18 18 H 1.48498 * 109.46803 * 209.99878 * 16 14 12 19 19 H 1.48498 * 109.47014 * 329.99859 * 16 14 12 20 20 C 1.46909 * 110.99776 * 193.23654 * 4 3 2 21 21 C 1.50697 * 109.47282 * 66.04102 * 20 4 3 22 22 C 1.38247 * 119.97738 * 270.32433 * 21 20 4 23 23 C 1.38195 * 120.02609 * 180.27934 * 22 21 20 24 24 C 1.38458 * 119.97403 * 359.41777 * 23 22 21 25 25 F 1.35098 * 120.02425 * 180.29759 * 24 23 22 26 26 C 1.38459 * 119.94682 * 0.28352 * 24 23 22 27 27 C 1.38195 * 119.97791 * 359.97438 * 26 24 23 28 28 H 4.40883 * 5.52200 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47107 * 24.18037 * 3 2 1 30 30 H 1.09000 * 109.47029 * 264.18240 * 3 2 1 31 31 H 1.08999 * 109.47249 * 319.25546 * 5 4 3 32 32 H 1.09005 * 109.46778 * 79.25073 * 5 4 3 33 33 H 1.09005 * 109.46563 * 209.99945 * 9 8 6 34 34 H 1.09005 * 109.46936 * 329.99235 * 9 8 6 35 35 H 1.08993 * 109.47338 * 300.00012 * 10 9 8 36 36 H 1.08998 * 109.46830 * 60.00045 * 10 9 8 37 37 H 1.08999 * 109.46522 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46815 * 209.99947 * 11 8 6 39 39 H 1.09003 * 109.46740 * 330.00123 * 11 8 6 40 40 H 0.97008 * 120.00251 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.46790 * 306.04181 * 20 4 3 42 42 H 1.08993 * 109.46816 * 186.04443 * 20 4 3 43 43 H 1.08001 * 119.98245 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.01436 * 179.69882 * 23 22 21 45 45 H 1.08006 * 120.01002 * 180.02562 * 26 24 23 46 46 H 1.07997 * 119.98873 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.1240 -0.8104 5 6 2.8526 2.4081 -0.1554 6 6 2.9204 3.5170 -1.1735 7 8 3.0831 3.2544 -2.3463 8 7 2.8000 4.8007 -0.7808 9 6 2.6038 5.1180 0.6359 10 6 3.9645 5.3072 1.3093 11 6 2.8654 5.8788 -1.7707 12 6 1.4802 6.1708 -2.2876 13 1 0.6356 5.6098 -1.9156 14 6 1.2910 7.1548 -3.2346 15 7 2.3194 7.8383 -3.6872 16 14 -0.4261 7.5172 -3.8748 17 1 -1.0610 8.5578 -3.0268 18 1 -0.3396 8.0044 -5.2749 19 1 -1.2424 6.2775 -3.8315 20 6 4.5694 0.9825 -1.0951 21 6 4.7903 -0.2191 -1.9773 22 6 5.0096 -1.4610 -1.4109 23 6 5.2180 -2.5625 -2.2189 24 6 5.1952 -2.4242 -3.5964 25 9 5.3929 -3.5015 -4.3873 26 6 4.9694 -1.1811 -4.1626 27 6 4.7665 -0.0799 -3.3526 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.9367 -0.4209 30 1 3.0093 0.1050 1.0224 31 1 1.8560 2.3797 0.2852 32 1 3.5906 2.5872 0.6266 33 1 2.0231 6.0362 0.7255 34 1 2.0690 4.3011 1.1205 35 1 4.5451 4.3892 1.2197 36 1 4.4992 6.1241 0.8247 37 1 3.8184 5.5437 2.3633 38 1 3.2759 6.7748 -1.3054 39 1 3.5053 5.5734 -2.5986 40 1 2.1863 8.5304 -4.3537 41 1 5.1142 0.8519 -0.1601 42 1 4.9289 1.8773 -1.6031 43 1 5.0220 -1.5695 -0.3364 44 1 5.3941 -3.5317 -1.7762 45 1 4.9509 -1.0721 -5.2370 46 1 4.5899 0.8897 -3.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065957988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -6.315111 kcal Electronic energy + Delta-G solvation = -28237.127433 eV Core-core repulsion = 24235.510034 eV Total energy + Delta-G solvation = -4001.617399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.89797 -41.02904 -40.13075 -38.08617 -36.77608 -34.90164 -34.00837 -32.34596 -32.09678 -31.56885 -29.98475 -28.47735 -27.67878 -25.16433 -24.33218 -23.96709 -23.48724 -22.07171 -19.89870 -19.13457 -18.62049 -18.60615 -17.92883 -17.32230 -17.29019 -17.20412 -16.63647 -16.47592 -15.96494 -15.79124 -15.56246 -15.26299 -14.76981 -14.65083 -14.49354 -14.38722 -14.32227 -14.14643 -13.76437 -13.64770 -13.39128 -13.22261 -13.12293 -13.03431 -12.66698 -12.59666 -12.47520 -12.38793 -12.15005 -11.90125 -11.83604 -11.69507 -11.36554 -11.08240 -10.63438 -10.49925 -10.02985 -9.60575 -9.38428 -9.22127 -8.21470 -6.35876 0.11395 0.29397 1.34809 1.38121 1.48249 1.73569 1.92277 1.97649 2.31980 2.44189 2.58192 3.07640 3.25150 3.29367 3.54196 3.67981 3.76892 3.88766 3.99093 4.12977 4.13689 4.23846 4.34081 4.38486 4.46021 4.50062 4.54034 4.64373 4.66443 4.75126 4.96408 4.99806 5.01789 5.06037 5.08392 5.13696 5.16448 5.24561 5.27852 5.41138 5.59769 5.60417 5.82709 5.91484 5.96715 6.05135 6.09550 6.72851 6.76109 6.89125 7.30856 7.60752 8.85015 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.003124 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.076809 B = 8959.657654 C = 9720.057410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.209 4.209 3 C 0.159 3.841 4 N -0.540 5.540 5 C 0.055 3.945 6 C 0.496 3.504 7 O -0.575 6.575 8 N -0.608 5.608 9 C 0.100 3.900 10 C -0.159 4.159 11 C 0.267 3.733 12 C -0.540 4.540 13 H 0.050 0.950 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.275 1.275 20 C 0.102 3.898 21 C -0.089 4.089 22 C -0.079 4.079 23 C -0.149 4.149 24 C 0.079 3.921 25 F -0.149 7.149 26 C -0.164 4.164 27 C -0.081 4.081 28 H 0.237 0.763 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.020 0.980 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.135 0.865 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -19.196 14.367 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.209 4.209 3 C 0.034 3.966 4 N -0.264 5.264 5 C -0.076 4.076 6 C 0.284 3.716 7 O -0.454 6.454 8 N -0.340 5.340 9 C -0.023 4.023 10 C -0.217 4.217 11 C 0.145 3.855 12 C -0.579 4.579 13 H 0.068 0.932 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.789 3.211 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.200 1.200 20 C -0.024 4.024 21 C -0.090 4.090 22 C -0.097 4.097 23 C -0.167 4.167 24 C 0.060 3.940 25 F -0.128 7.128 26 C -0.183 4.183 27 C -0.099 4.099 28 H 0.254 0.746 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.038 0.962 39 H 0.014 0.986 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.186 0.814 44 H 0.180 0.820 45 H 0.153 0.847 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.797 -19.209 13.174 23.782 hybrid contribution -0.632 0.752 -0.794 1.263 sum 4.164 -18.457 12.380 22.612 Atomic orbital electron populations 1.25640 0.96943 0.99134 1.00358 1.23404 0.95230 1.01539 1.00767 1.19295 0.84564 0.95068 0.97689 1.61267 1.16946 1.00798 1.47437 1.21966 1.04257 0.87412 0.93925 1.21188 0.76471 0.84019 0.89919 1.90630 1.50405 1.83503 1.20878 1.48296 1.70604 1.06096 1.09019 1.21712 0.98568 1.02555 0.79428 1.22145 0.96282 1.01845 1.01472 1.18614 0.95496 0.84532 0.86840 1.21717 0.94169 1.18427 1.23601 0.93221 1.25818 1.01286 0.95726 0.96227 1.70047 1.31966 1.23851 1.30921 0.85469 0.79402 0.78440 0.77832 1.18703 1.20653 1.20019 1.21021 0.86925 0.96000 0.98479 1.19879 1.00012 0.95491 0.93570 1.21241 0.96941 0.89942 1.01560 1.21387 1.02903 1.01734 0.90707 1.17938 1.03437 0.83062 0.89578 1.91468 1.92795 1.54009 1.74508 1.21245 1.03841 0.91725 1.01491 1.20993 0.96707 0.98187 0.94048 0.74622 0.86961 0.89007 0.87505 0.88462 0.91287 0.88590 0.91880 0.94357 0.88686 0.96227 0.98635 0.92480 0.89956 0.91829 0.81357 0.82034 0.84690 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.56 19.25 74.32 1.43 -3.13 16 2 C -0.21 -4.96 12.42 31.13 0.39 -4.57 16 3 C 0.16 3.05 5.27 84.50 0.45 3.49 16 4 N -0.54 -14.19 3.99 -916.53 -3.65 -17.84 16 5 C 0.05 1.49 3.80 85.56 0.32 1.81 16 6 C 0.50 20.29 7.22 87.65 0.63 20.92 16 7 O -0.58 -29.62 15.04 -3.03 -0.05 -29.67 16 8 N -0.61 -25.42 2.46 -826.15 -2.03 -27.45 16 9 C 0.10 2.95 5.86 86.38 0.51 3.46 16 10 C -0.16 -3.67 10.19 71.98 0.73 -2.93 16 11 C 0.27 14.47 5.16 85.63 0.44 14.92 16 12 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 13 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 14 C 0.01 0.49 5.46 84.65 0.46 0.95 16 15 N -0.93 -56.80 13.29 21.44 0.28 -56.51 16 16 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C 0.10 2.39 4.76 85.55 0.41 2.79 16 21 C -0.09 -2.02 4.93 -19.86 -0.10 -2.12 16 22 C -0.08 -1.25 7.84 22.26 0.17 -1.08 16 23 C -0.15 -2.53 10.03 22.31 0.22 -2.31 16 24 C 0.08 1.79 7.30 22.38 0.16 1.95 16 25 F -0.15 -3.53 17.27 44.97 0.78 -2.75 16 26 C -0.16 -4.14 10.03 22.31 0.22 -3.91 16 27 C -0.08 -2.23 9.70 22.26 0.22 -2.02 16 28 H 0.24 3.76 7.80 -4.41 -0.03 3.73 16 29 H 0.11 1.89 5.25 -2.39 -0.01 1.88 16 30 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.11 2.76 6.53 -2.39 -0.02 2.74 16 32 H 0.10 1.91 6.77 -2.38 -0.02 1.90 16 33 H 0.07 2.21 8.07 -2.38 -0.02 2.20 16 34 H 0.10 2.18 6.59 -2.38 -0.02 2.17 16 35 H 0.06 1.28 7.13 -2.39 -0.02 1.26 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 39 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 40 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 41 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 42 H 0.06 1.95 6.78 -2.39 -0.02 1.93 16 43 H 0.17 1.37 7.77 -2.91 -0.02 1.35 16 44 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 46 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -79.59 392.40 5.25 -74.34 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.97 Total: 15.29 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 6.92 Total: -3.20 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -5.40 Total: -101.80 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.59 5.25 -74.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065957988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.025 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds