Wall clock time and date at job start Tue Mar 31 2020 16:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00114 * 2 1 4 4 C 1.53244 * 109.34131 * 172.74872 * 3 2 1 5 5 N 1.47078 * 108.52193 * 53.82576 * 4 3 2 6 6 S 1.65599 * 120.87886 * 128.79293 * 5 4 3 7 7 O 1.42094 * 106.40280 * 23.57006 * 6 5 4 8 8 O 1.42104 * 106.39876 * 156.48376 * 6 5 4 9 9 N 1.65600 * 107.22112 * 270.02439 * 6 5 4 10 10 C 1.47079 * 120.88379 * 269.72307 * 9 6 5 11 11 C 1.53695 * 108.27355 * 128.75509 * 10 9 6 12 12 N 1.46892 * 109.25830 * 54.08475 * 11 10 9 13 13 C 1.46903 * 110.99998 * 172.60558 * 12 11 10 14 14 C 1.50695 * 109.47182 * 294.30102 * 13 12 11 15 15 H 1.08001 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00405 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99893 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00289 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47308 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47402 * 119.99973 * 18 16 14 21 21 H 1.48502 * 109.46867 * 239.99836 * 18 16 14 22 22 C 1.46895 * 111.26943 * 296.75172 * 12 11 10 23 23 C 1.47076 * 120.87863 * 90.00211 * 9 6 5 24 24 C 1.47075 * 118.23863 * 308.82237 * 5 4 3 25 25 C 1.46906 * 110.99793 * 235.69773 * 2 1 3 26 26 H 1.09002 * 109.47401 * 184.30035 * 1 2 3 27 27 H 1.09001 * 109.46874 * 64.30048 * 1 2 3 28 28 H 1.09004 * 109.46970 * 304.30181 * 1 2 3 29 29 H 1.08997 * 109.49709 * 292.70410 * 3 2 1 30 30 H 1.08999 * 109.49712 * 52.78756 * 3 2 1 31 31 H 1.09004 * 109.62720 * 294.12373 * 4 3 2 32 32 H 1.08991 * 109.63307 * 173.54207 * 4 3 2 33 33 H 1.09002 * 109.62774 * 248.52486 * 10 9 6 34 34 H 1.09001 * 109.62730 * 9.10140 * 10 9 6 35 35 H 1.08996 * 109.64729 * 294.07306 * 11 10 9 36 36 H 1.09004 * 109.41800 * 173.95029 * 11 10 9 37 37 H 1.09004 * 109.47093 * 54.30146 * 13 12 11 38 38 H 1.09001 * 109.47234 * 174.30013 * 13 12 11 39 39 H 0.96996 * 120.00364 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49553 * 303.14688 * 22 12 11 41 41 H 1.08997 * 109.51554 * 183.07697 * 22 12 11 42 42 H 1.09006 * 109.63090 * 350.89950 * 23 9 6 43 43 H 1.08998 * 109.63293 * 111.47595 * 23 9 6 44 44 H 1.09005 * 109.62958 * 291.46709 * 24 5 4 45 45 H 1.09003 * 109.79340 * 170.98625 * 24 5 4 46 46 H 1.08997 * 109.49300 * 307.21595 * 25 2 1 47 47 H 1.08998 * 109.49136 * 67.26921 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5165 1.3311 0.1825 5 7 4.0870 0.4459 -0.8442 6 16 5.3381 0.9526 -1.8034 7 8 5.9982 1.9880 -1.0882 8 8 5.9978 -0.2218 -2.2561 9 7 4.6724 1.6612 -3.1439 10 6 4.3743 0.8694 -4.3470 11 6 2.9173 1.1411 -4.7539 12 7 2.7166 2.5891 -4.8986 13 6 1.3894 2.8836 -5.4552 14 6 1.3091 2.3604 -6.8662 15 1 2.1591 1.8596 -7.3056 16 6 0.1509 2.5219 -7.5965 17 7 -0.8841 3.1323 -7.0617 18 14 0.0512 1.8728 -9.3453 19 1 1.3398 1.2309 -9.7093 20 1 -1.0441 0.8745 -9.4410 21 1 -0.2214 2.9974 -10.2759 22 6 2.9177 3.2852 -3.6207 23 6 4.3691 3.1002 -3.1651 24 6 3.5164 -0.9010 -0.9968 25 6 1.9954 -0.7729 -1.1330 26 1 -0.3634 -1.0248 0.0771 27 1 -0.3633 0.4457 -0.9260 28 1 -0.3633 0.5792 0.8490 29 1 1.7556 1.8531 -0.9479 30 1 1.5457 1.9337 0.8183 31 1 3.7563 0.9448 1.1732 32 1 3.9256 2.3349 0.0689 33 1 5.0443 1.1642 -5.1546 34 1 4.5034 -0.1907 -4.1289 35 1 2.2448 0.7553 -3.9878 36 1 2.7083 0.6483 -5.7035 37 1 0.6247 2.4026 -4.8453 38 1 1.2274 3.9615 -5.4577 39 1 -1.6990 3.2457 -7.5753 40 1 2.2452 2.8696 -2.8704 41 1 2.7090 4.3474 -3.7480 42 1 4.4948 3.5157 -2.1652 43 1 5.0386 3.6054 -3.8613 44 1 3.7562 -1.5019 -0.1195 45 1 3.9250 -1.3762 -1.8887 46 1 1.5456 -1.7657 -1.1363 47 1 1.7551 -0.2616 -2.0651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076176566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:42 Heat of formation + Delta-G solvation = -47.585582 kcal Electronic energy + Delta-G solvation = -29252.309485 eV Core-core repulsion = 25404.266378 eV Total energy + Delta-G solvation = -3848.043108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.07864 -38.38085 -37.36122 -35.86731 -34.74593 -34.44520 -32.37333 -31.41764 -30.78009 -28.19943 -27.87495 -25.14233 -24.10080 -24.04860 -23.34504 -21.88665 -21.02643 -19.82802 -18.80980 -18.03889 -17.39948 -16.47421 -16.24221 -15.44670 -15.23898 -15.07073 -14.99330 -14.90588 -14.48760 -14.34195 -14.20847 -14.16430 -13.78111 -13.53121 -13.02400 -12.54644 -12.50990 -12.33236 -12.26930 -12.16172 -12.05498 -12.01304 -11.83420 -11.50803 -11.32333 -11.31185 -11.12098 -11.06739 -10.87457 -10.80735 -10.65453 -10.43387 -9.94656 -9.40382 -9.29756 -8.87268 -8.54167 -8.49160 -7.36502 -6.12042 -4.13872 0.52864 2.76465 3.24871 3.33060 3.37293 3.43401 3.71699 4.21415 4.34233 4.44417 4.68628 4.77614 4.86587 4.89842 5.03614 5.08103 5.19134 5.23732 5.32672 5.35634 5.39384 5.41499 5.43767 5.51679 5.57744 5.65621 5.70486 5.72980 5.73714 5.82353 5.90090 5.96056 6.14418 6.26905 6.31110 6.42765 6.46367 6.75184 6.80481 6.80665 7.16357 7.20335 7.69709 7.96425 8.07044 8.42538 8.94051 9.51230 10.98765 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004213 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.217478 B = 6644.643548 C = 7620.084152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.038 3.962 4 C 0.130 3.870 5 N -1.009 6.009 6 S 2.783 3.217 7 O -0.978 6.978 8 O -0.977 6.977 9 N -1.004 6.004 10 C 0.126 3.874 11 C 0.055 3.945 12 N -0.532 5.532 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.044 3.956 23 C 0.130 3.870 24 C 0.130 3.870 25 C 0.038 3.962 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.095 0.905 37 H -0.012 1.012 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.023 0.977 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -5.534 15.072 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.091 4.091 4 C 0.004 3.996 5 N -0.849 5.849 6 S 2.793 3.207 7 O -0.962 6.962 8 O -0.961 6.961 9 N -0.845 5.845 10 C 0.001 3.999 11 C -0.075 4.075 12 N -0.257 5.257 13 C 0.070 3.930 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.086 4.086 23 C 0.004 3.996 24 C 0.004 3.996 25 C -0.091 4.091 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.113 0.887 37 H 0.006 0.994 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.276 -5.631 15.321 17.871 hybrid contribution -1.743 -0.084 -1.244 2.143 sum 5.533 -5.715 14.077 16.169 Atomic orbital electron populations 1.22370 0.86827 1.02319 1.00869 1.61910 1.07938 1.13465 1.43115 1.22516 0.95245 0.89787 1.01568 1.21458 0.92569 0.93777 0.91763 1.58307 1.54719 1.22501 1.49332 1.01973 0.73414 0.72931 0.72365 1.93582 1.71984 1.58219 1.72439 1.93589 1.71972 1.49082 1.81446 1.58125 1.80516 1.17292 1.28590 1.21734 0.97833 0.93880 0.86497 1.22388 0.93236 0.90749 1.01155 1.61979 1.34592 1.06990 1.22176 1.19711 0.81880 0.96834 0.94527 1.21180 0.98741 1.37025 0.97780 0.91721 1.24990 0.95628 0.95391 0.98535 1.69964 1.03701 1.42829 1.37290 0.86446 0.78027 0.78598 0.84373 1.19591 1.21129 1.20987 1.22375 0.94405 0.99889 0.91955 1.21534 0.97281 0.79270 1.01510 1.21453 0.92579 0.82616 1.02944 1.22522 0.95209 0.99021 0.92397 0.91269 0.95182 0.91336 0.93833 0.89661 0.90404 0.89206 0.90347 0.90102 0.96073 0.88705 0.99381 0.95125 0.92931 0.95932 0.90267 0.90142 0.90369 0.90432 0.89104 0.89607 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.58 60.07 0.58 0.81 16 2 N -0.54 -5.63 4.88 -242.61 -1.18 -6.82 16 3 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 4 C 0.13 1.33 6.53 -3.60 -0.02 1.31 16 5 N -1.01 -11.75 3.39 -113.24 -0.38 -12.13 16 6 S 2.78 38.86 6.12 -107.50 -0.66 38.20 16 7 O -0.98 -15.43 15.70 -57.17 -0.90 -16.33 16 8 O -0.98 -15.64 15.69 -57.17 -0.90 -16.54 16 9 N -1.00 -14.20 3.38 -112.97 -0.38 -14.58 16 10 C 0.13 1.85 6.56 -3.37 -0.02 1.83 16 11 C 0.05 0.96 5.47 -3.47 -0.02 0.94 16 12 N -0.53 -10.56 4.62 -235.48 -1.09 -11.65 16 13 C 0.20 4.79 4.72 -4.98 -0.02 4.77 16 14 C -0.51 -13.57 8.41 -34.44 -0.29 -13.86 16 15 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 23 C 0.13 1.81 6.53 -3.60 -0.02 1.79 16 24 C 0.13 1.36 6.53 -3.61 -0.02 1.34 16 25 C 0.04 0.40 5.62 -3.70 -0.02 0.38 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.16 16 29 H 0.04 0.52 7.50 -51.93 -0.39 0.13 16 30 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.88 7.22 -51.93 -0.37 0.51 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.06 7.21 -51.93 -0.37 0.69 16 35 H 0.02 0.37 7.50 -51.93 -0.39 -0.02 16 36 H 0.09 1.81 6.67 -51.93 -0.35 1.46 16 37 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 38 H 0.03 0.81 7.97 -51.93 -0.41 0.40 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.37 7.50 -51.93 -0.39 -0.02 16 41 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 42 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.94 7.23 -51.93 -0.38 0.56 16 46 H 0.09 0.78 8.11 -51.93 -0.42 0.35 16 47 H 0.05 0.56 7.50 -51.93 -0.39 0.17 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -32.06 372.72 -12.12 -44.19 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.96 Total: -2.59 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.01 Total: 1.79 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -2.30 Total: -70.25 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.79 Total: -32.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 38.86 SS G_CDS: -0.66 Total: 38.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.06 -12.12 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076176566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.398 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds