Wall clock time and date at job start Tue Mar 31 2020 18:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47189 * 239.99577 * 2 1 3 5 5 N 1.46502 * 109.46714 * 119.99488 * 2 1 3 6 6 C 1.35851 * 126.05859 * 75.29072 * 5 2 1 7 7 C 1.35726 * 107.55852 * 180.16188 * 6 5 2 8 8 N 1.40837 * 126.06840 * 179.87560 * 7 6 5 9 9 C 1.34782 * 119.99918 * 179.71833 * 8 7 6 10 10 O 1.21605 * 119.99614 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00384 * 180.02562 * 9 8 7 12 12 C 1.40185 * 120.00371 * 179.97438 * 11 9 8 13 13 C 1.40407 * 125.96804 * 359.96979 * 12 11 9 14 14 C 1.35243 * 107.86546 * 179.75749 * 13 12 11 15 15 N 1.34966 * 107.85746 * 0.39206 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.86947 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31208 * 125.97697 * 179.97438 * 12 11 9 26 26 C 1.40232 * 107.85617 * 359.61125 * 7 6 5 27 27 N 1.30838 * 108.33868 * 0.23931 * 26 7 6 28 28 H 1.08998 * 109.47439 * 300.00415 * 1 2 3 29 29 H 1.09007 * 109.47272 * 60.00500 * 1 2 3 30 30 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47093 * 299.99404 * 3 2 1 33 33 H 1.08998 * 109.47318 * 59.99511 * 3 2 1 34 34 H 1.09003 * 109.47102 * 299.99991 * 4 2 1 35 35 H 1.08999 * 109.47244 * 60.00443 * 4 2 1 36 36 H 1.08997 * 109.46912 * 179.97438 * 4 2 1 37 37 H 1.08003 * 126.21617 * 0.02562 * 6 5 2 38 38 H 0.96998 * 120.00868 * 359.70953 * 8 7 6 39 39 H 0.96998 * 119.99833 * 359.97438 * 11 9 8 40 40 H 1.07998 * 126.07175 * 0.02562 * 13 12 11 41 41 H 1.07996 * 126.07464 * 180.23808 * 14 13 12 42 42 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 43 43 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 44 44 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 45 45 H 1.07994 * 125.83232 * 180.22402 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1963 6 6 2.0218 -2.0339 1.3987 7 6 2.5505 -2.2613 2.6278 8 7 2.7341 -3.5205 3.2314 9 6 3.2789 -3.6053 4.4613 10 8 3.6123 -2.5945 5.0496 11 7 3.4551 -4.8102 5.0388 12 6 4.0222 -4.8984 6.3178 13 6 4.4503 -3.8184 7.1063 14 6 4.9304 -4.3175 8.2680 15 7 4.8209 -5.6618 8.2176 16 6 5.2267 -6.5983 9.2685 17 6 4.0563 -7.4707 9.6433 18 1 3.1055 -7.3407 9.1479 19 6 4.1994 -8.4347 10.6186 20 7 5.3588 -8.5965 11.2181 21 14 2.7490 -9.5165 11.0826 22 1 3.1619 -10.4698 12.1437 23 1 1.6389 -8.6674 11.5847 24 1 2.2931 -10.2721 9.8884 25 7 4.2458 -6.0045 6.9872 26 6 2.8871 -1.0204 3.1875 27 7 2.5690 -0.0830 2.3319 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2493 37 1 1.6663 -2.7842 0.7080 38 1 2.4684 -4.3268 2.7622 39 1 3.1894 -5.6164 4.5695 40 1 4.4006 -2.7742 6.8354 41 1 5.3326 -3.7427 9.0891 42 1 5.5589 -6.0404 10.1440 43 1 6.0428 -7.2221 8.9040 44 1 6.1121 -8.0350 10.9770 45 1 3.3326 -0.8649 4.1589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:14 Heat of formation + Delta-G solvation = 137.083387 kcal Electronic energy + Delta-G solvation = -27199.905105 eV Core-core repulsion = 23256.718644 eV Total energy + Delta-G solvation = -3943.186461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63512 -40.72555 -39.58077 -37.17348 -34.95214 -34.63653 -33.62225 -30.89475 -30.74239 -29.39358 -28.88552 -27.94127 -27.66485 -26.18978 -23.42266 -22.94255 -22.36498 -20.94322 -20.57750 -20.01897 -19.41587 -17.79860 -17.51684 -17.16842 -16.65708 -15.85232 -15.73962 -15.35262 -14.92786 -14.87753 -14.48075 -14.26419 -14.07021 -13.89092 -13.76742 -13.21283 -13.03147 -12.80499 -12.68465 -12.61100 -12.44592 -12.27321 -12.26346 -11.81343 -11.72961 -11.64134 -11.17156 -10.97342 -10.81258 -10.78299 -10.45207 -10.15816 -10.10113 -9.71311 -9.49907 -8.99904 -8.57363 -8.22090 -7.89044 -7.44023 -6.57028 -4.31038 1.63660 1.98912 2.43325 2.45608 2.76742 3.17285 3.38318 3.39883 3.50482 3.59651 3.79089 4.01732 4.21563 4.26582 4.37360 4.41933 4.52296 4.83065 4.94084 5.02797 5.13668 5.16282 5.18448 5.22626 5.32260 5.38375 5.42937 5.48082 5.52062 5.67516 5.73196 5.83288 6.02048 6.13564 6.44080 6.47332 6.65326 6.74856 6.77771 6.85485 6.95377 7.40371 7.57295 7.64709 7.84984 7.86758 8.35516 8.48017 8.56103 8.63682 9.37108 10.80441 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.001864 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.349036 B =15018.399578 C =15455.879217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 C -0.144 4.144 4 C -0.159 4.159 5 N -0.364 5.364 6 C 0.011 3.989 7 C 0.028 3.972 8 N -0.656 5.656 9 C 0.718 3.282 10 O -0.556 6.556 11 N -0.639 5.639 12 C 0.277 3.723 13 C -0.282 4.282 14 C 0.051 3.949 15 N -0.318 5.318 16 C 0.249 3.751 17 C -0.607 4.607 18 H 0.063 0.937 19 C 0.022 3.978 20 N -0.905 5.905 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.304 5.304 26 C 0.052 3.948 27 N -0.283 5.283 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.171 0.829 38 H 0.406 0.594 39 H 0.408 0.592 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.267 0.733 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 15.848 -25.764 31.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.104 3.896 3 C -0.202 4.202 4 C -0.218 4.218 5 N -0.150 5.150 6 C -0.136 4.136 7 C -0.078 4.078 8 N -0.305 5.305 9 C 0.417 3.583 10 O -0.431 6.431 11 N -0.289 5.289 12 C 0.023 3.977 13 C -0.314 4.314 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.131 3.869 17 C -0.646 4.646 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.135 5.135 26 C -0.135 4.135 27 N -0.104 5.104 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.188 0.812 38 H 0.241 0.759 39 H 0.243 0.757 40 H 0.181 0.819 41 H 0.185 0.815 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.272 15.458 -24.449 30.086 hybrid contribution 0.251 0.164 -1.313 1.347 sum -8.021 15.622 -25.763 31.179 Atomic orbital electron populations 1.22271 0.93096 1.03074 1.03347 1.20647 0.94203 0.93592 0.81174 1.21912 1.02289 0.92910 1.03072 1.22244 1.02439 1.00975 0.96094 1.48611 1.48916 1.03335 1.14177 1.21626 1.07039 0.87404 0.97579 1.17423 1.10524 0.85746 0.94064 1.41699 1.65294 1.06861 1.16616 1.15420 0.78873 0.83398 0.80575 1.90749 1.55366 1.34066 1.62897 1.41247 1.64163 1.07812 1.15664 1.18733 0.99742 0.93326 0.85907 1.21529 1.14484 1.00493 0.94861 1.22564 1.02304 0.85308 0.99720 1.48760 1.43993 1.05079 1.12172 1.19754 0.97245 0.87752 0.82131 1.22104 0.97524 1.20526 1.24401 0.91849 1.25920 1.02203 0.97036 0.93071 1.70850 1.01545 1.39856 1.41787 0.83419 0.73850 0.75881 0.76468 1.20544 1.21242 1.21171 1.77341 1.21602 1.19624 0.94913 1.24573 1.00237 0.88098 1.00641 1.77369 1.17051 1.22078 0.93882 0.91520 0.90498 0.91839 0.91564 0.91024 0.90885 0.91643 0.90189 0.91446 0.81160 0.75909 0.75686 0.81905 0.81506 0.93598 0.94793 0.92271 0.77570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.73 37.16 0.32 -0.50 16 2 C 0.19 1.20 1.24 -131.82 -0.16 1.03 16 3 C -0.14 -0.91 8.09 37.16 0.30 -0.61 16 4 C -0.16 -0.69 8.29 37.16 0.31 -0.39 16 5 N -0.36 -3.47 3.45 -48.32 -0.17 -3.64 16 6 C 0.01 0.10 10.67 -16.67 -0.18 -0.08 16 7 C 0.03 0.31 6.90 -83.87 -0.58 -0.27 16 8 N -0.66 -6.90 5.48 -14.39 -0.08 -6.97 16 9 C 0.72 10.35 8.51 -86.91 -0.74 9.61 16 10 O -0.56 -9.53 10.62 5.27 0.06 -9.47 16 11 N -0.64 -9.63 5.45 -15.50 -0.08 -9.72 16 12 C 0.28 5.51 8.11 -154.37 -1.25 4.26 16 13 C -0.28 -5.56 9.61 -39.83 -0.38 -5.94 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 15 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 16 C 0.25 6.31 5.57 -5.19 -0.03 6.29 16 17 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 18 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 20 N -0.90 -26.36 13.65 55.43 0.76 -25.60 16 21 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 N -0.30 -6.99 12.42 31.44 0.39 -6.60 16 26 C 0.05 0.69 10.84 -17.23 -0.19 0.51 16 27 N -0.28 -3.56 11.65 30.70 0.36 -3.20 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 34 H 0.06 0.24 7.38 -51.93 -0.38 -0.15 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.17 0.88 7.57 -52.48 -0.40 0.48 16 38 H 0.41 2.75 8.84 -40.82 -0.36 2.39 16 39 H 0.41 4.85 8.84 -40.82 -0.36 4.49 16 40 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 41 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 42 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 43 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 44 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 45 H 0.21 3.03 5.91 -52.49 -0.31 2.72 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -35.13 378.83 -7.81 -42.94 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.25 Total: 6.54 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.19 Total: -2.16 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.94 Total: -63.39 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.13 -7.81 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.026 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds