Wall clock time and date at job start Tue Mar 31 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47189 * 239.99577 * 2 1 3 5 5 N 1.46502 * 109.46714 * 119.99488 * 2 1 3 6 6 C 1.35851 * 126.05859 * 75.29072 * 5 2 1 7 7 C 1.35726 * 107.55852 * 180.16188 * 6 5 2 8 8 N 1.40837 * 126.06840 * 179.87560 * 7 6 5 9 9 C 1.34782 * 119.99918 * 179.71833 * 8 7 6 10 10 O 1.21605 * 119.99614 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00384 * 180.02562 * 9 8 7 12 12 C 1.40185 * 120.00371 * 179.97438 * 11 9 8 13 13 C 1.40407 * 125.96804 * 359.96979 * 12 11 9 14 14 C 1.35243 * 107.86546 * 179.75749 * 13 12 11 15 15 N 1.34966 * 107.85746 * 0.39206 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.86947 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31208 * 125.97697 * 179.97438 * 12 11 9 26 26 C 1.40232 * 107.85617 * 359.61125 * 7 6 5 27 27 N 1.30838 * 108.33868 * 0.23931 * 26 7 6 28 28 H 1.08998 * 109.47439 * 300.00415 * 1 2 3 29 29 H 1.09007 * 109.47272 * 60.00500 * 1 2 3 30 30 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46894 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47093 * 299.99404 * 3 2 1 33 33 H 1.08998 * 109.47318 * 59.99511 * 3 2 1 34 34 H 1.09003 * 109.47102 * 299.99991 * 4 2 1 35 35 H 1.08999 * 109.47244 * 60.00443 * 4 2 1 36 36 H 1.08997 * 109.46912 * 179.97438 * 4 2 1 37 37 H 1.08003 * 126.21617 * 0.02562 * 6 5 2 38 38 H 0.96998 * 120.00868 * 359.70953 * 8 7 6 39 39 H 0.96998 * 119.99833 * 359.97438 * 11 9 8 40 40 H 1.07998 * 126.07175 * 0.02562 * 13 12 11 41 41 H 1.07996 * 126.07464 * 180.23808 * 14 13 12 42 42 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 43 43 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 44 44 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 45 45 H 1.07994 * 125.83232 * 180.22402 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1963 6 6 2.0218 -2.0339 1.3987 7 6 2.5505 -2.2613 2.6278 8 7 2.7341 -3.5205 3.2314 9 6 3.2789 -3.6053 4.4613 10 8 3.6123 -2.5945 5.0496 11 7 3.4551 -4.8102 5.0388 12 6 4.0222 -4.8984 6.3178 13 6 4.4503 -3.8184 7.1063 14 6 4.9304 -4.3175 8.2680 15 7 4.8209 -5.6618 8.2176 16 6 5.2267 -6.5983 9.2685 17 6 4.0563 -7.4707 9.6433 18 1 3.1055 -7.3407 9.1479 19 6 4.1994 -8.4347 10.6186 20 7 5.3588 -8.5965 11.2181 21 14 2.7490 -9.5165 11.0826 22 1 3.1619 -10.4698 12.1437 23 1 1.6389 -8.6674 11.5847 24 1 2.2931 -10.2721 9.8884 25 7 4.2458 -6.0045 6.9872 26 6 2.8871 -1.0204 3.1875 27 7 2.5690 -0.0830 2.3319 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2493 37 1 1.6663 -2.7842 0.7080 38 1 2.4684 -4.3268 2.7622 39 1 3.1894 -5.6164 4.5695 40 1 4.4006 -2.7742 6.8354 41 1 5.3326 -3.7427 9.0891 42 1 5.5589 -6.0404 10.1440 43 1 6.0428 -7.2221 8.9040 44 1 6.1121 -8.0350 10.9770 45 1 3.3326 -0.8649 4.1589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118894430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:13 Heat of formation + Delta-G solvation = 113.637775 kcal Electronic energy + Delta-G solvation = -27200.921783 eV Core-core repulsion = 23256.718644 eV Total energy + Delta-G solvation = -3944.203139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55944 -42.14091 -40.81202 -37.79256 -36.43852 -35.71298 -35.43674 -32.63929 -31.54096 -31.00854 -29.77259 -28.30292 -28.28599 -27.95307 -25.22026 -23.83059 -23.64688 -22.36108 -21.51711 -21.40867 -20.37408 -19.22063 -18.85592 -18.47263 -17.90172 -17.01154 -16.84332 -16.29900 -16.10796 -15.87941 -15.83512 -15.61531 -15.30238 -14.96894 -14.77751 -14.60464 -14.18601 -13.90171 -13.82846 -13.62873 -13.23357 -13.18404 -13.13358 -13.08913 -12.69586 -12.61090 -12.34772 -12.17029 -12.04526 -11.94531 -11.73585 -11.64910 -11.57169 -11.07589 -10.99180 -10.67964 -10.30708 -9.82560 -9.23354 -8.78252 -8.62600 -6.54113 0.82115 0.93042 1.04104 1.49606 1.52598 1.54386 1.58680 1.80091 1.93115 2.04758 2.46960 2.50040 3.02599 3.10030 3.50913 3.81847 3.85322 3.91856 3.93677 4.10638 4.17303 4.48264 4.53067 4.58322 4.65523 4.69420 4.72601 4.75588 4.79333 4.84332 4.87766 4.88218 4.88831 4.98495 5.13774 5.28157 5.29051 5.35260 5.56156 5.77232 5.83247 5.86775 5.97140 6.17196 6.29004 6.43380 6.63424 6.77342 7.07443 7.21705 7.36989 8.59946 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.001864 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.349036 B =15018.399578 C =15455.879217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 C -0.143 4.143 4 C -0.155 4.155 5 N -0.357 5.357 6 C 0.039 3.961 7 C -0.001 4.001 8 N -0.632 5.632 9 C 0.714 3.286 10 O -0.585 6.585 11 N -0.630 5.630 12 C 0.289 3.711 13 C -0.288 4.288 14 C 0.054 3.946 15 N -0.344 5.344 16 C 0.259 3.741 17 C -0.620 4.620 18 H 0.046 0.954 19 C -0.020 4.020 20 N -0.924 5.924 21 Si 1.120 2.880 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.274 1.274 25 N -0.345 5.345 26 C 0.027 3.973 27 N -0.311 5.311 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.216 0.784 38 H 0.427 0.573 39 H 0.423 0.577 40 H 0.171 0.829 41 H 0.200 0.800 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.261 0.739 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.949 15.808 -28.588 34.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 C -0.200 4.200 4 C -0.213 4.213 5 N -0.143 5.143 6 C -0.109 4.109 7 C -0.106 4.106 8 N -0.282 5.282 9 C 0.414 3.586 10 O -0.462 6.462 11 N -0.282 5.282 12 C 0.033 3.967 13 C -0.319 4.319 14 C -0.094 4.094 15 N -0.126 5.126 16 C 0.140 3.860 17 C -0.658 4.658 18 H 0.064 0.936 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.941 3.059 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.200 1.200 25 N -0.176 5.176 26 C -0.159 4.159 27 N -0.133 5.133 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.233 0.767 38 H 0.265 0.735 39 H 0.261 0.739 40 H 0.188 0.812 41 H 0.217 0.783 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.216 15.447 -27.350 33.030 hybrid contribution 0.814 0.375 -0.658 1.112 sum -9.402 15.822 -28.008 33.514 Atomic orbital electron populations 1.22262 0.91714 1.03731 1.03626 1.21101 0.95220 0.93554 0.80804 1.21918 1.01289 0.93369 1.03463 1.22254 1.01690 1.01852 0.95490 1.49076 1.47322 1.03921 1.14002 1.22260 1.04133 0.87742 0.96803 1.17557 1.12644 0.85139 0.95252 1.41356 1.63992 1.07698 1.15142 1.15555 0.78963 0.82569 0.81498 1.90741 1.56567 1.34916 1.63998 1.41190 1.63819 1.08985 1.14205 1.19012 0.98070 0.92554 0.87082 1.21725 1.14501 1.00806 0.94892 1.23163 1.01184 0.84273 1.00735 1.48538 1.45970 1.05757 1.12356 1.19417 0.95841 0.87854 0.82900 1.22289 0.97661 1.21431 1.24464 0.93589 1.27282 1.03818 0.98055 0.92802 1.70946 1.02018 1.40373 1.42636 0.82875 0.71478 0.74789 0.76753 1.20064 1.19707 1.19970 1.77255 1.23666 1.21227 0.95471 1.24351 1.01459 0.89638 1.00463 1.77318 1.18258 1.22622 0.95108 0.93569 0.87928 0.90969 0.93092 0.88179 0.92944 0.90172 0.87813 0.92633 0.76713 0.73471 0.73881 0.81215 0.78303 0.92890 0.96535 0.92990 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.73 71.98 0.63 -0.51 16 2 C 0.17 1.80 1.24 3.60 0.00 1.81 16 3 C -0.14 -1.63 8.09 71.98 0.58 -1.05 16 4 C -0.15 -0.77 8.29 71.98 0.60 -0.17 16 5 N -0.36 -6.22 3.45 -306.78 -1.06 -7.28 16 6 C 0.04 0.58 10.67 83.49 0.89 1.47 16 7 C 0.00 -0.03 6.90 37.59 0.26 0.23 16 8 N -0.63 -12.26 5.48 -317.70 -1.74 -14.00 16 9 C 0.71 20.19 8.51 179.05 1.52 21.71 16 10 O -0.59 -20.37 10.62 -4.05 -0.04 -20.41 16 11 N -0.63 -18.56 5.45 -321.22 -1.75 -20.32 16 12 C 0.29 11.48 8.11 133.32 1.08 12.56 16 13 C -0.29 -11.36 9.61 22.11 0.21 -11.14 16 14 C 0.05 2.17 11.44 83.52 0.96 3.13 16 15 N -0.34 -16.30 3.67 -351.84 -1.29 -17.59 16 16 C 0.26 13.43 5.57 85.64 0.48 13.91 16 17 C -0.62 -35.44 9.24 25.60 0.24 -35.20 16 18 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 19 C -0.02 -1.12 5.46 84.65 0.46 -0.66 16 20 N -0.92 -54.22 13.65 21.45 0.29 -53.93 16 21 Si 1.12 49.79 29.90 68.60 2.05 51.84 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 N -0.35 -16.09 12.42 -54.44 -0.68 -16.76 16 26 C 0.03 0.74 10.84 85.33 0.92 1.67 16 27 N -0.31 -7.94 11.65 -56.79 -0.66 -8.60 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.81 8.04 -2.39 -0.02 0.80 16 34 H 0.08 0.19 7.38 -2.39 -0.02 0.17 16 35 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.22 1.08 7.57 -2.91 -0.02 1.06 16 38 H 0.43 4.59 8.84 -92.71 -0.82 3.77 16 39 H 0.42 9.55 8.84 -92.71 -0.82 8.73 16 40 H 0.17 6.49 5.91 -2.91 -0.02 6.47 16 41 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 42 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 43 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 44 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 45 H 0.18 5.82 5.91 -2.91 -0.02 5.80 16 Total: -1.00 -78.94 378.83 3.45 -75.48 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.50 Total: 23.81 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 8.83 Total: 7.75 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -6.89 Total: -138.47 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.04 Total: -20.41 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Total: -78.94 3.45 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.121 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds