Wall clock time and date at job start Tue Mar 31 2020 18:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47119 * 119.99923 * 2 1 3 5 5 C 1.52995 * 109.47008 * 175.00118 * 4 2 1 6 6 N 1.46507 * 109.47061 * 179.97438 * 5 4 2 7 7 C 1.34817 * 126.59653 * 124.70827 * 6 5 4 8 8 C 1.36607 * 106.83650 * 180.26458 * 7 6 5 9 9 C 1.47508 * 125.77004 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99972 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00054 * 180.02562 * 9 8 7 12 12 C 1.40106 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97207 * 359.70990 * 12 11 9 14 14 C 1.35240 * 107.86878 * 179.82860 * 13 12 11 15 15 N 1.34974 * 107.85866 * 0.43465 * 14 13 12 16 16 C 1.46502 * 125.97355 * 179.72441 * 15 14 13 17 17 C 1.50695 * 109.47042 * 124.97581 * 16 15 14 18 18 H 1.08003 * 120.00014 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00311 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99557 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00596 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46774 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47347 * 119.99617 * 21 19 17 24 24 H 1.48498 * 109.47169 * 240.00017 * 21 19 17 25 25 N 1.31228 * 125.97373 * 180.02562 * 12 11 9 26 26 N 1.34397 * 108.45889 * 0.02562 * 8 7 6 27 27 N 1.28758 * 109.52553 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.47475 * 299.99748 * 1 2 3 29 29 H 1.08999 * 109.46982 * 60.00735 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47276 * 239.99508 * 2 1 3 32 32 H 1.09007 * 109.46739 * 299.99790 * 3 2 1 33 33 H 1.08998 * 109.47442 * 59.99610 * 3 2 1 34 34 H 1.08998 * 109.47349 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47070 * 54.99899 * 4 2 1 36 36 H 1.08998 * 109.46955 * 294.99752 * 4 2 1 37 37 H 1.08999 * 109.47384 * 59.99973 * 5 4 2 38 38 H 1.08997 * 109.47408 * 299.99923 * 5 4 2 39 39 H 1.08000 * 126.58080 * 0.27119 * 7 6 5 40 40 H 0.97007 * 120.00122 * 359.97438 * 11 9 8 41 41 H 1.07999 * 126.06700 * 0.02562 * 13 12 11 42 42 H 1.07990 * 126.07450 * 180.12029 * 14 13 12 43 43 H 1.08998 * 109.47026 * 244.97454 * 16 15 14 44 44 H 1.08997 * 109.47178 * 4.97730 * 16 15 14 45 45 H 0.97004 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3845 7 6 4.8269 -2.6247 2.4163 8 6 5.0347 -2.9244 3.7328 9 6 5.8280 -4.0580 4.2443 10 8 6.3659 -4.8233 3.4672 11 7 5.9567 -4.2455 5.5726 12 6 6.7105 -5.3219 6.0584 13 6 7.3774 -6.2803 5.2785 14 6 7.9898 -7.1456 6.1184 15 7 7.7157 -6.7596 7.3824 16 6 8.1778 -7.4230 8.6041 17 6 8.8985 -6.4265 9.4750 18 1 9.0023 -5.4015 9.1506 19 6 9.4263 -6.8233 10.6853 20 7 9.3003 -8.0715 11.0800 21 14 10.3190 -5.5878 11.7652 22 1 10.3235 -4.2606 11.0991 23 1 9.6259 -5.4828 13.0743 24 1 11.7176 -6.0380 11.9802 25 7 6.9120 -5.6139 7.3218 26 7 4.3934 -2.0123 4.4833 27 7 3.8004 -1.1645 3.7168 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6054 -1.7198 1.2952 36 1 1.7517 -0.1583 2.1370 37 1 3.9994 0.1675 1.1421 38 1 3.8532 -1.3939 0.3003 39 1 5.2091 -3.1676 1.5645 40 1 5.5279 -3.6348 6.1925 41 1 7.4002 -6.3179 4.1994 42 1 8.5873 -7.9973 5.8291 43 1 7.3215 -7.8259 9.1450 44 1 8.8567 -8.2346 8.3423 45 1 9.6713 -8.3506 11.9317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132588610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:31 Heat of formation + Delta-G solvation = 129.581648 kcal Electronic energy + Delta-G solvation = -26572.858189 eV Core-core repulsion = 22629.346429 eV Total energy + Delta-G solvation = -3943.511760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47860 -40.57749 -39.01226 -37.77874 -34.87268 -34.52845 -33.30404 -31.47804 -30.86139 -29.80058 -29.26991 -27.78141 -26.72574 -25.13381 -24.34956 -22.76725 -22.17677 -21.39579 -20.63591 -20.17989 -19.49500 -18.05616 -16.72633 -16.70983 -16.56166 -16.23140 -15.75297 -15.40892 -15.05280 -14.88647 -14.73957 -14.44478 -14.32176 -14.08588 -13.75329 -13.54139 -12.93585 -12.82140 -12.63962 -12.41724 -12.31361 -12.22693 -12.10331 -11.76843 -11.70414 -11.50172 -11.40485 -11.24634 -11.02663 -10.85165 -10.58533 -10.41325 -10.22977 -10.08744 -9.68967 -9.54457 -9.43813 -8.60595 -8.09697 -7.44017 -6.21419 -4.26123 0.86155 1.48162 1.67375 2.73293 2.80153 3.14242 3.25459 3.32976 3.40284 3.73680 3.83264 3.83897 4.04155 4.06528 4.24242 4.30613 4.35707 4.52157 4.55163 4.67731 4.71413 4.92578 4.99096 5.06552 5.14012 5.18331 5.26863 5.33502 5.34301 5.45431 5.57779 5.63980 5.67557 5.74809 5.85561 6.03555 6.28306 6.50694 6.61830 6.88558 7.08731 7.41691 7.53721 7.71720 7.76491 7.92417 8.07487 8.22555 8.66824 8.84019 9.39621 10.87363 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.001767 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.509653 B =15838.845665 C =16435.410233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.155 4.155 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.097 3.903 8 C -0.095 4.095 9 C 0.612 3.388 10 O -0.518 6.518 11 N -0.614 5.614 12 C 0.257 3.743 13 C -0.287 4.287 14 C 0.051 3.949 15 N -0.318 5.318 16 C 0.257 3.743 17 C -0.528 4.528 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.300 5.300 26 N -0.202 5.202 27 N -0.061 5.061 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.207 0.793 40 H 0.419 0.581 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.491 14.749 -25.803 33.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.212 4.212 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.146 5.146 7 C -0.060 4.060 8 C -0.235 4.235 9 C 0.396 3.604 10 O -0.391 6.391 11 N -0.261 5.261 12 C 0.004 3.996 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.140 3.860 17 C -0.566 4.566 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.131 5.131 26 N -0.076 5.076 27 N -0.041 5.041 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.223 0.777 40 H 0.255 0.745 41 H 0.178 0.822 42 H 0.186 0.814 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.968 15.368 -23.996 32.187 hybrid contribution 0.930 -0.007 -0.552 1.081 sum -14.038 15.361 -24.548 32.182 Atomic orbital electron populations 1.21827 0.94437 1.02096 1.02208 1.21061 0.96524 0.96403 0.97181 1.21960 1.01028 0.95754 1.02432 1.21993 0.92357 1.02436 1.00073 1.22219 0.96577 0.98660 0.82705 1.50578 1.34906 1.20071 1.09029 1.23365 0.93643 0.89130 0.99906 1.21265 1.09837 1.01716 0.90657 1.16567 0.79572 0.82678 0.81601 1.90749 1.47146 1.44864 1.56346 1.42136 1.49650 1.27349 1.06924 1.19037 0.97521 0.90974 0.92034 1.21513 1.09882 0.99273 1.01134 1.22561 1.01437 1.00919 0.84947 1.49113 1.35302 1.18586 1.06963 1.19762 0.95600 0.92489 0.78149 1.21313 1.35479 0.96640 1.03179 0.91187 1.24942 0.96024 0.95693 0.97426 1.69934 1.45504 1.15934 1.22025 0.86275 0.79026 0.81205 0.80025 1.19529 1.20693 1.20803 1.77378 1.16281 1.04029 1.15401 1.74688 1.05390 1.00879 1.26684 1.81989 1.20630 1.18884 0.82623 0.92359 0.92308 0.92492 0.90735 0.92305 0.92183 0.92494 0.90827 0.89802 0.88082 0.87640 0.77657 0.74457 0.82205 0.81421 0.93645 0.92477 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.19 37.16 0.34 -0.17 16 2 C -0.09 -0.27 2.92 -90.62 -0.26 -0.54 16 3 C -0.15 -0.45 8.95 37.16 0.33 -0.11 16 4 C -0.13 -0.54 4.89 -26.73 -0.13 -0.68 16 5 C 0.12 0.47 6.29 -4.04 -0.03 0.45 16 6 N -0.36 -2.94 3.69 -61.06 -0.23 -3.17 16 7 C 0.10 0.86 11.27 -16.83 -0.19 0.67 16 8 C -0.10 -1.21 6.99 -83.55 -0.58 -1.79 16 9 C 0.61 9.52 7.78 -12.49 -0.10 9.42 16 10 O -0.52 -8.78 13.99 5.27 0.07 -8.71 16 11 N -0.61 -10.60 5.44 -12.08 -0.07 -10.67 16 12 C 0.26 5.36 8.11 -154.43 -1.25 4.11 16 13 C -0.29 -5.71 9.60 -39.83 -0.38 -6.09 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 16 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 17 C -0.53 -14.89 9.24 -34.44 -0.32 -15.20 16 18 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -25.55 13.29 55.43 0.74 -24.82 16 21 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 N -0.30 -7.13 12.42 31.43 0.39 -6.74 16 26 N -0.20 -2.72 12.04 32.84 0.40 -2.33 16 27 N -0.06 -0.71 13.65 60.35 0.82 0.11 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.16 8.14 -51.92 -0.42 -0.27 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.13 6.56 -51.93 -0.34 -0.21 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.32 6.56 -51.93 -0.34 -0.02 16 38 H 0.11 0.14 8.08 -51.93 -0.42 -0.28 16 39 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.42 6.65 8.51 -40.82 -0.35 6.30 16 41 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 42 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -34.06 386.64 -6.57 -40.63 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.37 Total: 1.83 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.90 Total: -0.90 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 1.82 Total: -55.33 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.06 -6.57 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132588610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.210 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds