Wall clock time and date at job start Tue Mar 31 2020 18:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47119 * 119.99923 * 2 1 3 5 5 C 1.52995 * 109.47008 * 175.00118 * 4 2 1 6 6 N 1.46507 * 109.47061 * 179.97438 * 5 4 2 7 7 C 1.34817 * 126.59653 * 124.70827 * 6 5 4 8 8 C 1.36607 * 106.83650 * 180.26458 * 7 6 5 9 9 C 1.47508 * 125.77004 * 179.97438 * 8 7 6 10 10 O 1.21609 * 119.99972 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00054 * 180.02562 * 9 8 7 12 12 C 1.40106 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97207 * 359.70990 * 12 11 9 14 14 C 1.35240 * 107.86878 * 179.82860 * 13 12 11 15 15 N 1.34974 * 107.85866 * 0.43465 * 14 13 12 16 16 C 1.46502 * 125.97355 * 179.72441 * 15 14 13 17 17 C 1.50695 * 109.47042 * 124.97581 * 16 15 14 18 18 H 1.08003 * 120.00014 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00311 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99557 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00596 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46774 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47347 * 119.99617 * 21 19 17 24 24 H 1.48498 * 109.47169 * 240.00017 * 21 19 17 25 25 N 1.31228 * 125.97373 * 180.02562 * 12 11 9 26 26 N 1.34397 * 108.45889 * 0.02562 * 8 7 6 27 27 N 1.28758 * 109.52553 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.47475 * 299.99748 * 1 2 3 29 29 H 1.08999 * 109.46982 * 60.00735 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47276 * 239.99508 * 2 1 3 32 32 H 1.09007 * 109.46739 * 299.99790 * 3 2 1 33 33 H 1.08998 * 109.47442 * 59.99610 * 3 2 1 34 34 H 1.08998 * 109.47349 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47070 * 54.99899 * 4 2 1 36 36 H 1.08998 * 109.46955 * 294.99752 * 4 2 1 37 37 H 1.08999 * 109.47384 * 59.99973 * 5 4 2 38 38 H 1.08997 * 109.47408 * 299.99923 * 5 4 2 39 39 H 1.08000 * 126.58080 * 0.27119 * 7 6 5 40 40 H 0.97007 * 120.00122 * 359.97438 * 11 9 8 41 41 H 1.07999 * 126.06700 * 0.02562 * 13 12 11 42 42 H 1.07990 * 126.07450 * 180.12029 * 14 13 12 43 43 H 1.08998 * 109.47026 * 244.97454 * 16 15 14 44 44 H 1.08997 * 109.47178 * 4.97730 * 16 15 14 45 45 H 0.97004 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3845 7 6 4.8269 -2.6247 2.4163 8 6 5.0347 -2.9244 3.7328 9 6 5.8280 -4.0580 4.2443 10 8 6.3659 -4.8233 3.4672 11 7 5.9567 -4.2455 5.5726 12 6 6.7105 -5.3219 6.0584 13 6 7.3774 -6.2803 5.2785 14 6 7.9898 -7.1456 6.1184 15 7 7.7157 -6.7596 7.3824 16 6 8.1778 -7.4230 8.6041 17 6 8.8985 -6.4265 9.4750 18 1 9.0023 -5.4015 9.1506 19 6 9.4263 -6.8233 10.6853 20 7 9.3003 -8.0715 11.0800 21 14 10.3190 -5.5878 11.7652 22 1 10.3235 -4.2606 11.0991 23 1 9.6259 -5.4828 13.0743 24 1 11.7176 -6.0380 11.9802 25 7 6.9120 -5.6139 7.3218 26 7 4.3934 -2.0123 4.4833 27 7 3.8004 -1.1645 3.7168 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6054 -1.7198 1.2952 36 1 1.7517 -0.1583 2.1370 37 1 3.9994 0.1675 1.1421 38 1 3.8532 -1.3939 0.3003 39 1 5.2091 -3.1676 1.5645 40 1 5.5279 -3.6348 6.1925 41 1 7.4002 -6.3179 4.1994 42 1 8.5873 -7.9973 5.8291 43 1 7.3215 -7.8259 9.1450 44 1 8.8567 -8.2346 8.3423 45 1 9.6713 -8.3506 11.9317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132588610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:27 Heat of formation + Delta-G solvation = 107.504348 kcal Electronic energy + Delta-G solvation = -26573.815533 eV Core-core repulsion = 22629.346429 eV Total energy + Delta-G solvation = -3944.469104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -43.31119 -42.15644 -40.34514 -38.13437 -36.28220 -35.40526 -35.09564 -32.91870 -32.03410 -30.96361 -30.39776 -28.59073 -28.01807 -25.84234 -25.52213 -24.46261 -22.85811 -22.66794 -21.78815 -21.01670 -20.69760 -19.05042 -18.68480 -18.13984 -17.36098 -17.22143 -17.07064 -16.52886 -16.18476 -16.00782 -15.75913 -15.52746 -15.37750 -14.91787 -14.73178 -14.49082 -14.24152 -13.98883 -13.80779 -13.67201 -13.39802 -13.14759 -12.93647 -12.80755 -12.72773 -12.64992 -12.30741 -12.16689 -12.08005 -12.04419 -11.68889 -11.63719 -11.52319 -11.38873 -11.17190 -11.12734 -10.71645 -10.39899 -9.75282 -9.11796 -8.32856 -6.46464 0.10036 0.43204 1.02385 1.18077 1.37009 1.38774 1.40607 1.52618 1.80844 2.28852 2.40076 2.41013 2.98991 3.06582 3.29864 3.71155 3.76244 3.89436 3.97095 3.99108 4.03723 4.28010 4.28947 4.34636 4.45408 4.57134 4.75433 4.76858 4.82032 4.90689 4.91475 4.94210 4.99176 5.03894 5.05837 5.09164 5.13314 5.31372 5.41229 5.46649 5.51909 5.57661 5.80469 5.90473 6.16033 6.30762 6.65761 6.79140 6.97566 7.06167 7.23533 8.74973 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.001767 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.509653 B =15838.845665 C =16435.410233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.156 4.156 4 C -0.126 4.126 5 C 0.109 3.891 6 N -0.346 5.346 7 C 0.124 3.876 8 C -0.123 4.123 9 C 0.617 3.383 10 O -0.531 6.531 11 N -0.618 5.618 12 C 0.264 3.736 13 C -0.289 4.289 14 C 0.059 3.941 15 N -0.343 5.343 16 C 0.272 3.728 17 C -0.548 4.548 18 H 0.051 0.949 19 C 0.020 3.980 20 N -0.919 5.919 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.268 1.268 25 N -0.348 5.348 26 N -0.229 5.229 27 N -0.082 5.082 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.145 0.855 39 H 0.246 0.754 40 H 0.422 0.578 41 H 0.176 0.824 42 H 0.206 0.794 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 15.551 -28.424 35.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.213 4.213 4 C -0.164 4.164 5 C -0.009 4.009 6 N -0.130 5.130 7 C -0.034 4.034 8 C -0.263 4.263 9 C 0.403 3.597 10 O -0.406 6.406 11 N -0.265 5.265 12 C 0.010 3.990 13 C -0.320 4.320 14 C -0.090 4.090 15 N -0.125 5.125 16 C 0.153 3.847 17 C -0.586 4.586 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.558 5.558 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.199 1.199 24 H -0.193 1.193 25 N -0.179 5.179 26 N -0.103 5.103 27 N -0.062 5.062 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.163 0.837 39 H 0.262 0.738 40 H 0.260 0.740 41 H 0.193 0.807 42 H 0.223 0.777 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.585 16.202 -26.651 34.431 hybrid contribution 0.684 -0.177 0.062 0.710 sum -13.901 16.025 -26.589 34.015 Atomic orbital electron populations 1.21852 0.95080 1.01904 1.02010 1.21026 0.95945 0.96419 0.97082 1.21973 1.01641 0.95601 1.02062 1.21926 0.92663 1.01894 0.99918 1.22718 0.96225 0.99819 0.82154 1.50874 1.33630 1.19549 1.08938 1.23897 0.91734 0.88376 0.99417 1.21036 1.11400 1.01694 0.92167 1.16919 0.79081 0.83045 0.80616 1.90713 1.47850 1.45664 1.56352 1.42316 1.49613 1.26702 1.07904 1.19389 0.96696 0.91463 0.91481 1.21750 1.09634 0.98918 1.01679 1.23232 1.00716 1.01548 0.83486 1.48868 1.36872 1.19382 1.07334 1.19361 0.94346 0.92173 0.78828 1.21442 1.36529 0.96281 1.04397 0.93114 1.25713 0.96490 0.97478 0.98399 1.70000 1.45930 1.17252 1.22640 0.85311 0.78454 0.78517 0.78188 1.20148 1.19888 1.19303 1.77291 1.18126 1.05217 1.17310 1.74670 1.06160 1.01550 1.27937 1.81922 1.21033 1.18988 0.84285 0.93364 0.91749 0.92684 0.88965 0.91933 0.93359 0.91514 0.91429 0.91867 0.86770 0.83712 0.73763 0.74049 0.80733 0.77728 0.96057 0.91971 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 71.98 0.66 -0.20 16 2 C -0.09 -0.31 2.92 -10.79 -0.03 -0.34 16 3 C -0.16 -0.60 8.95 71.98 0.64 0.05 16 4 C -0.13 -0.81 4.89 30.59 0.15 -0.66 16 5 C 0.11 0.50 6.29 86.38 0.54 1.04 16 6 N -0.35 -4.76 3.69 -347.08 -1.28 -6.04 16 7 C 0.12 1.84 11.27 83.85 0.95 2.78 16 8 C -0.12 -2.97 6.99 40.81 0.29 -2.69 16 9 C 0.62 18.73 7.78 86.69 0.67 19.41 16 10 O -0.53 -17.19 13.99 -4.06 -0.06 -17.25 16 11 N -0.62 -21.54 5.44 -310.40 -1.69 -23.23 16 12 C 0.26 11.10 8.11 133.34 1.08 12.18 16 13 C -0.29 -11.28 9.60 22.11 0.21 -11.07 16 14 C 0.06 2.31 11.44 83.52 0.96 3.27 16 15 N -0.34 -16.46 3.67 -351.85 -1.29 -17.75 16 16 C 0.27 14.34 6.26 85.63 0.54 14.87 16 17 C -0.55 -31.65 9.24 25.60 0.24 -31.42 16 18 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 19 C 0.02 1.10 5.46 84.65 0.46 1.56 16 20 N -0.92 -52.68 13.29 21.45 0.28 -52.40 16 21 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 N -0.35 -17.04 12.42 -54.47 -0.68 -17.72 16 26 N -0.23 -6.12 12.04 -50.00 -0.60 -6.72 16 27 N -0.08 -1.85 13.65 37.02 0.51 -1.34 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.12 6.56 -2.39 -0.02 0.11 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.32 6.56 -2.39 -0.02 0.31 16 38 H 0.15 -0.38 8.08 -2.39 -0.02 -0.40 16 39 H 0.25 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.42 13.88 8.51 -92.70 -0.79 13.09 16 41 H 0.18 6.28 5.91 -2.91 -0.02 6.26 16 42 H 0.21 6.21 8.06 -2.92 -0.02 6.19 16 43 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 3.16 8.07 -2.39 -0.02 3.15 16 45 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.56 386.64 4.80 -70.76 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.23 Total: 16.27 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 7.36 Total: 8.79 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -4.75 Total: -125.20 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -75.56 4.80 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132588610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.262 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds