Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30840 * 125.89858 * 2 1 4 4 N 1.40078 * 108.20630 * 180.26065 * 3 2 1 5 5 C 1.46498 * 126.04122 * 179.69702 * 4 3 2 6 6 C 1.34952 * 107.92613 * 359.72031 * 4 3 2 7 7 C 1.35318 * 107.74318 * 359.97438 * 6 4 3 8 8 C 1.50702 * 126.03759 * 180.02562 * 7 6 4 9 9 H 1.09006 * 109.46938 * 145.02745 * 8 7 6 10 10 C 1.53000 * 109.47355 * 265.02353 * 8 7 6 11 11 N 1.46494 * 109.47319 * 25.02619 * 8 7 6 12 12 C 1.34780 * 120.00332 * 154.99750 * 11 8 7 13 13 O 1.21596 * 119.99507 * 0.02562 * 12 11 8 14 14 N 1.34768 * 120.00292 * 180.02562 * 12 11 8 15 15 C 1.40201 * 120.00142 * 180.02562 * 14 12 11 16 16 C 1.40396 * 125.97176 * 359.97438 * 15 14 12 17 17 C 1.35243 * 107.86896 * 179.97438 * 16 15 14 18 18 N 1.34962 * 107.85356 * 0.22585 * 17 16 15 19 19 C 1.46501 * 125.97082 * 179.76577 * 18 17 16 20 20 C 1.50703 * 109.46706 * 125.00181 * 19 18 17 21 21 H 1.07992 * 120.00189 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00333 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47151 * 90.00298 * 24 22 20 26 26 H 1.48497 * 109.47275 * 210.00193 * 24 22 20 27 27 H 1.48501 * 109.47082 * 330.00431 * 24 22 20 28 28 N 1.31202 * 125.97171 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.47238 * 270.21472 * 1 2 3 30 30 H 1.09006 * 109.47411 * 30.20819 * 1 2 3 31 31 H 1.08997 * 109.47663 * 150.21348 * 1 2 3 32 32 H 1.09002 * 109.47056 * 270.02586 * 5 4 3 33 33 H 1.08997 * 109.47292 * 30.02206 * 5 4 3 34 34 H 1.09001 * 109.47456 * 150.02326 * 5 4 3 35 35 H 1.07997 * 126.13065 * 179.97438 * 6 4 3 36 36 H 1.09007 * 109.46819 * 300.00584 * 10 8 7 37 37 H 1.08998 * 109.46592 * 59.99677 * 10 8 7 38 38 H 1.08992 * 109.47286 * 180.02562 * 10 8 7 39 39 H 0.96998 * 120.00015 * 334.99776 * 11 8 7 40 40 H 0.96998 * 120.00056 * 359.97438 * 14 12 11 41 41 H 1.08003 * 126.06768 * 359.93842 * 16 15 14 42 42 H 1.08002 * 126.06857 * 179.97438 * 17 16 15 43 43 H 1.09000 * 109.47836 * 245.00121 * 19 18 17 44 44 H 1.08997 * 109.47518 * 5.00660 * 19 18 17 45 45 H 0.96995 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6086 0.6342 -0.0061 5 6 4.7898 1.5008 -0.0144 6 6 3.6142 -0.7153 -0.0034 7 6 2.3271 -1.1330 0.0047 8 6 1.8599 -2.5657 0.0107 9 1 0.9499 -2.6487 0.6049 10 6 1.5749 -3.0153 -1.4238 11 7 2.9015 -3.4166 0.5913 12 6 2.5710 -4.5917 1.1626 13 8 1.4082 -4.9459 1.1956 14 7 3.5292 -5.3743 1.6972 15 6 3.1854 -6.5969 2.2909 16 6 1.8894 -7.1261 2.3980 17 6 1.9788 -8.3177 3.0315 18 7 3.2788 -8.5360 3.3208 19 6 3.8216 -9.7087 4.0112 20 6 4.8957 -10.3386 3.1623 21 1 5.1490 -9.9084 2.2048 22 6 5.5558 -11.4638 3.6088 23 7 5.2478 -11.9876 4.7752 24 14 6.8867 -12.2452 2.5564 25 1 8.2017 -11.6432 2.8938 26 1 6.9298 -13.7064 2.8171 27 1 6.5868 -12.0069 1.1216 28 7 4.0186 -7.4465 2.8437 29 1 -0.3634 0.0039 1.0277 30 1 -0.3634 0.8881 -0.5171 31 1 -0.3634 -0.8918 -0.5105 32 1 5.0770 1.7136 -1.0441 33 1 4.5591 2.4343 0.4988 34 1 5.6121 0.9992 0.4960 35 1 4.4890 -1.3485 -0.0071 36 1 0.7999 -2.3821 -1.8558 37 1 2.4849 -2.9323 -2.0180 38 1 1.2366 -4.0514 -1.4194 39 1 3.8291 -3.1343 0.5646 40 1 4.4568 -5.0919 1.6705 41 1 0.9820 -6.6635 2.0388 42 1 1.1555 -8.9755 3.2678 43 1 4.2466 -9.4032 4.9673 44 1 3.0237 -10.4311 4.1825 45 1 5.7119 -12.7793 5.0891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172371250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = 134.225173 kcal Electronic energy + Delta-G solvation = -27284.071440 eV Core-core repulsion = 23340.761038 eV Total energy + Delta-G solvation = -3943.310402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.75056 -40.65208 -39.52914 -36.16174 -34.58856 -34.17037 -33.33323 -31.51994 -30.48030 -30.22630 -29.24637 -28.94654 -26.59537 -25.91017 -23.72150 -22.87973 -21.97072 -20.79267 -20.18522 -19.99441 -19.57266 -18.14294 -16.99656 -16.57443 -16.46648 -15.97948 -15.82136 -15.37503 -14.93697 -14.59794 -14.51466 -14.14852 -14.04544 -13.83799 -13.63717 -13.51349 -13.12467 -12.83176 -12.74579 -12.47267 -12.41503 -12.28412 -12.18508 -12.08919 -11.74710 -11.40889 -11.02503 -10.90615 -10.87074 -10.38764 -10.24154 -10.03391 -9.64864 -9.57470 -9.46697 -9.29058 -8.67874 -8.61690 -8.06179 -7.37429 -6.22621 -4.27479 1.49185 2.11399 2.27399 2.50186 2.71210 3.16512 3.24365 3.30100 3.35255 3.64598 3.88876 4.05705 4.29062 4.33504 4.39828 4.61420 4.69913 4.71920 4.95355 4.95964 5.12367 5.14507 5.21085 5.35158 5.43672 5.50553 5.55902 5.63616 5.69379 5.82823 5.89069 6.07718 6.27080 6.30140 6.40131 6.58487 6.60504 6.65193 6.91210 7.04329 7.14247 7.35602 7.54219 7.71695 7.85475 8.01557 8.10270 8.64360 8.70005 8.83347 9.37904 10.86021 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.002054 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.854771 B =13631.703767 C =14339.878878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.089 3.911 3 N -0.295 5.295 4 N -0.375 5.375 5 C 0.102 3.898 6 C 0.062 3.938 7 C -0.239 4.239 8 C 0.244 3.756 9 H 0.098 0.902 10 C -0.158 4.158 11 N -0.739 5.739 12 C 0.715 3.285 13 O -0.565 6.565 14 N -0.644 5.644 15 C 0.276 3.724 16 C -0.285 4.285 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.527 4.527 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.309 5.309 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.391 0.609 40 H 0.405 0.595 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 25.289 -10.631 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 N -0.118 5.118 4 N -0.156 5.156 5 C -0.039 4.039 6 C -0.085 4.085 7 C -0.251 4.251 8 C 0.138 3.862 9 H 0.116 0.884 10 C -0.217 4.217 11 N -0.395 5.395 12 C 0.414 3.586 13 O -0.441 6.441 14 N -0.294 5.294 15 C 0.022 3.978 16 C -0.317 4.317 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.565 4.565 21 H 0.087 0.913 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.140 5.140 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.225 0.775 40 H 0.240 0.760 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.107 25.844 -10.121 28.057 hybrid contribution 1.205 -0.943 -0.660 1.666 sum -2.902 24.901 -10.781 27.289 Atomic orbital electron populations 1.20262 0.86403 1.03579 1.03419 1.22178 0.96992 0.89677 0.98929 1.77337 0.86330 1.22591 1.25559 1.48327 1.05618 1.04614 1.57082 1.21878 0.83547 0.95081 1.03442 1.22150 0.99039 0.85041 1.02246 1.20015 0.92205 0.95661 1.17237 1.18873 0.90510 0.82472 0.94356 0.88441 1.22195 1.01768 1.02286 0.95429 1.45124 1.10661 1.20209 1.63531 1.15591 0.84682 0.80092 0.78199 1.90864 1.17311 1.72857 1.63021 1.41387 1.10061 1.18074 1.59891 1.18779 0.92909 0.87080 0.99007 1.21516 0.97830 0.97951 1.14399 1.22556 0.88651 0.98165 1.00586 1.49037 1.03514 1.15713 1.42040 1.19724 0.95763 0.78026 0.92380 1.21264 1.19234 1.11039 1.04997 0.91319 1.24951 0.97335 0.96544 0.95327 1.69915 1.42044 1.22522 1.18909 0.86329 0.81541 0.78119 0.80503 1.20389 1.21006 1.19737 1.77309 1.18517 0.97311 1.20882 0.90175 0.90774 0.89992 0.90678 0.89241 0.89332 0.81169 0.91632 0.92691 0.91411 0.77476 0.76038 0.82127 0.81566 0.93796 0.92550 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.22 36.00 0.37 -0.18 16 2 C 0.09 0.85 7.22 -82.41 -0.59 0.26 16 3 N -0.30 -3.13 12.58 33.67 0.42 -2.71 16 4 N -0.38 -3.08 4.01 -68.16 -0.27 -3.35 16 5 C 0.10 0.42 11.47 59.85 0.69 1.11 16 6 C 0.06 0.46 10.66 -17.22 -0.18 0.28 16 7 C -0.24 -2.13 5.22 -105.05 -0.55 -2.68 16 8 C 0.24 2.32 2.68 -69.08 -0.18 2.14 16 9 H 0.10 1.08 7.53 -51.93 -0.39 0.68 16 10 C -0.16 -1.42 9.47 37.16 0.35 -1.06 16 11 N -0.74 -7.38 5.05 -59.81 -0.30 -7.68 16 12 C 0.72 10.32 8.50 -86.92 -0.74 9.58 16 13 O -0.57 -9.96 13.13 5.28 0.07 -9.89 16 14 N -0.64 -9.90 5.45 -15.51 -0.08 -9.99 16 15 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 16 C -0.29 -5.72 9.61 -39.84 -0.38 -6.10 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 19 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 20 C -0.53 -14.68 9.23 -34.44 -0.32 -15.00 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 24 Si 0.91 21.36 29.54 -169.99 -5.02 16.33 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 28 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.17 0.73 7.05 -52.49 -0.37 0.36 16 36 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.39 2.77 7.01 -40.82 -0.29 2.48 16 40 H 0.41 4.97 8.84 -40.82 -0.36 4.61 16 41 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 42 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 43 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -35.70 385.22 -7.90 -43.60 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.29 Total: 5.35 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.12 Total: 1.63 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.66 Total: -62.83 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.70 -7.90 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172371250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.828 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds