Wall clock time and date at job start Tue Mar 31 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30840 * 125.89858 * 2 1 4 4 N 1.40078 * 108.20630 * 180.26065 * 3 2 1 5 5 C 1.46498 * 126.04122 * 179.69702 * 4 3 2 6 6 C 1.34952 * 107.92613 * 359.72031 * 4 3 2 7 7 C 1.35318 * 107.74318 * 359.97438 * 6 4 3 8 8 C 1.50702 * 126.03759 * 180.02562 * 7 6 4 9 9 H 1.09006 * 109.46938 * 145.02745 * 8 7 6 10 10 C 1.53000 * 109.47355 * 265.02353 * 8 7 6 11 11 N 1.46494 * 109.47319 * 25.02619 * 8 7 6 12 12 C 1.34780 * 120.00332 * 154.99750 * 11 8 7 13 13 O 1.21596 * 119.99507 * 0.02562 * 12 11 8 14 14 N 1.34768 * 120.00292 * 180.02562 * 12 11 8 15 15 C 1.40201 * 120.00142 * 180.02562 * 14 12 11 16 16 C 1.40396 * 125.97176 * 359.97438 * 15 14 12 17 17 C 1.35243 * 107.86896 * 179.97438 * 16 15 14 18 18 N 1.34962 * 107.85356 * 0.22585 * 17 16 15 19 19 C 1.46501 * 125.97082 * 179.76577 * 18 17 16 20 20 C 1.50703 * 109.46706 * 125.00181 * 19 18 17 21 21 H 1.07992 * 120.00189 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00333 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47151 * 90.00298 * 24 22 20 26 26 H 1.48497 * 109.47275 * 210.00193 * 24 22 20 27 27 H 1.48501 * 109.47082 * 330.00431 * 24 22 20 28 28 N 1.31202 * 125.97171 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.47238 * 270.21472 * 1 2 3 30 30 H 1.09006 * 109.47411 * 30.20819 * 1 2 3 31 31 H 1.08997 * 109.47663 * 150.21348 * 1 2 3 32 32 H 1.09002 * 109.47056 * 270.02586 * 5 4 3 33 33 H 1.08997 * 109.47292 * 30.02206 * 5 4 3 34 34 H 1.09001 * 109.47456 * 150.02326 * 5 4 3 35 35 H 1.07997 * 126.13065 * 179.97438 * 6 4 3 36 36 H 1.09007 * 109.46819 * 300.00584 * 10 8 7 37 37 H 1.08998 * 109.46592 * 59.99677 * 10 8 7 38 38 H 1.08992 * 109.47286 * 180.02562 * 10 8 7 39 39 H 0.96998 * 120.00015 * 334.99776 * 11 8 7 40 40 H 0.96998 * 120.00056 * 359.97438 * 14 12 11 41 41 H 1.08003 * 126.06768 * 359.93842 * 16 15 14 42 42 H 1.08002 * 126.06857 * 179.97438 * 17 16 15 43 43 H 1.09000 * 109.47836 * 245.00121 * 19 18 17 44 44 H 1.08997 * 109.47518 * 5.00660 * 19 18 17 45 45 H 0.96995 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6086 0.6342 -0.0061 5 6 4.7898 1.5008 -0.0144 6 6 3.6142 -0.7153 -0.0034 7 6 2.3271 -1.1330 0.0047 8 6 1.8599 -2.5657 0.0107 9 1 0.9499 -2.6487 0.6049 10 6 1.5749 -3.0153 -1.4238 11 7 2.9015 -3.4166 0.5913 12 6 2.5710 -4.5917 1.1626 13 8 1.4082 -4.9459 1.1956 14 7 3.5292 -5.3743 1.6972 15 6 3.1854 -6.5969 2.2909 16 6 1.8894 -7.1261 2.3980 17 6 1.9788 -8.3177 3.0315 18 7 3.2788 -8.5360 3.3208 19 6 3.8216 -9.7087 4.0112 20 6 4.8957 -10.3386 3.1623 21 1 5.1490 -9.9084 2.2048 22 6 5.5558 -11.4638 3.6088 23 7 5.2478 -11.9876 4.7752 24 14 6.8867 -12.2452 2.5564 25 1 8.2017 -11.6432 2.8938 26 1 6.9298 -13.7064 2.8171 27 1 6.5868 -12.0069 1.1216 28 7 4.0186 -7.4465 2.8437 29 1 -0.3634 0.0039 1.0277 30 1 -0.3634 0.8881 -0.5171 31 1 -0.3634 -0.8918 -0.5105 32 1 5.0770 1.7136 -1.0441 33 1 4.5591 2.4343 0.4988 34 1 5.6121 0.9992 0.4960 35 1 4.4890 -1.3485 -0.0071 36 1 0.7999 -2.3821 -1.8558 37 1 2.4849 -2.9323 -2.0180 38 1 1.2366 -4.0514 -1.4194 39 1 3.8291 -3.1343 0.5646 40 1 4.4568 -5.0919 1.6705 41 1 0.9820 -6.6635 2.0388 42 1 1.1555 -8.9755 3.2678 43 1 4.2466 -9.4032 4.9673 44 1 3.0237 -10.4311 4.1825 45 1 5.7119 -12.7793 5.0891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172371250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:16 Heat of formation + Delta-G solvation = 110.154093 kcal Electronic energy + Delta-G solvation = -27285.115241 eV Core-core repulsion = 23340.761038 eV Total energy + Delta-G solvation = -3944.354202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42155 -42.11307 -40.80802 -37.11358 -36.02608 -35.25732 -34.76062 -32.96713 -31.67733 -30.88605 -30.75518 -29.63124 -28.46499 -26.45564 -25.17900 -24.11671 -23.03177 -22.11651 -21.43454 -20.94891 -20.54533 -19.20639 -18.66345 -18.22157 -17.47401 -17.05626 -16.72543 -16.47792 -16.40443 -15.86563 -15.62318 -15.46567 -15.22259 -14.57654 -14.46374 -14.29532 -14.25468 -14.00427 -13.85195 -13.75646 -13.59653 -13.30974 -13.04919 -12.91812 -12.87321 -12.76125 -12.71324 -12.26967 -12.15986 -11.98915 -11.63761 -11.53543 -11.35228 -11.04090 -10.70265 -10.26032 -10.19639 -9.68364 -9.31578 -9.00705 -8.30554 -6.44695 0.89807 1.11402 1.17217 1.39709 1.40245 1.51899 1.64199 1.68929 1.77636 2.16220 2.37977 2.47562 3.00726 3.19231 3.53452 3.84104 4.00500 4.05375 4.20795 4.32455 4.41164 4.44930 4.46497 4.49398 4.70808 4.78084 4.80112 4.81535 4.85548 4.92535 4.99807 5.03490 5.05539 5.09497 5.14176 5.23428 5.35847 5.57561 5.59817 5.71062 5.80234 5.93059 6.02858 6.10294 6.33156 6.66654 6.72791 6.81382 7.20082 7.25069 7.49553 8.76738 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.002054 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.854771 B =13631.703767 C =14339.878878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.077 3.923 3 N -0.332 5.332 4 N -0.378 5.378 5 C 0.092 3.908 6 C 0.069 3.931 7 C -0.256 4.256 8 C 0.250 3.750 9 H 0.081 0.919 10 C -0.152 4.152 11 N -0.716 5.716 12 C 0.715 3.285 13 O -0.597 6.597 14 N -0.636 5.636 15 C 0.286 3.714 16 C -0.292 4.292 17 C 0.055 3.945 18 N -0.346 5.346 19 C 0.273 3.727 20 C -0.545 4.545 21 H 0.053 0.947 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.272 1.272 28 N -0.348 5.348 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.204 0.796 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.409 0.591 40 H 0.420 0.580 41 H 0.168 0.832 42 H 0.200 0.800 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 26.085 -11.873 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 N -0.156 5.156 4 N -0.159 5.159 5 C -0.047 4.047 6 C -0.078 4.078 7 C -0.268 4.268 8 C 0.145 3.855 9 H 0.099 0.901 10 C -0.211 4.211 11 N -0.373 5.373 12 C 0.414 3.586 13 O -0.475 6.475 14 N -0.288 5.288 15 C 0.030 3.970 16 C -0.323 4.323 17 C -0.094 4.094 18 N -0.128 5.128 19 C 0.154 3.846 20 C -0.583 4.583 21 H 0.071 0.929 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.197 1.197 28 N -0.179 5.179 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.221 0.779 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.257 0.743 41 H 0.185 0.815 42 H 0.216 0.784 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.053 26.717 -11.384 29.201 hybrid contribution 0.854 -1.023 -0.310 1.369 sum -2.198 25.693 -11.693 28.315 Atomic orbital electron populations 1.20330 0.85427 1.04237 1.03724 1.22536 0.97959 0.89773 0.98624 1.77284 0.87725 1.23550 1.27063 1.48672 1.05700 1.05353 1.56130 1.22204 0.82879 0.94976 1.04670 1.22662 0.99613 0.85225 1.00329 1.19940 0.92935 0.94827 1.19097 1.18800 0.89648 0.82838 0.94241 0.90118 1.22132 1.02577 1.01142 0.95207 1.44959 1.11948 1.18474 1.61909 1.15724 0.83957 0.80817 0.78104 1.90838 1.18639 1.73783 1.64202 1.41369 1.11253 1.16711 1.59484 1.19071 0.92674 0.87800 0.97423 1.21697 0.98102 0.98004 1.14496 1.23150 0.88300 0.98612 0.99297 1.48799 1.04559 1.15794 1.43661 1.19320 0.95245 0.78732 0.91316 1.21403 1.20459 1.11710 1.04778 0.92905 1.25755 0.99286 0.96823 0.96487 1.69994 1.42979 1.22938 1.20078 0.85339 0.78747 0.77629 0.78642 1.19767 1.19797 1.19709 1.77229 1.19744 0.98114 1.22845 0.90008 0.90314 0.89127 0.89447 0.89366 0.86728 0.77885 0.90394 0.91761 0.93475 0.75403 0.74260 0.81489 0.78358 0.96133 0.92437 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.22 71.23 0.73 -0.34 16 2 C 0.08 1.41 7.22 43.10 0.31 1.72 16 3 N -0.33 -6.74 12.58 -47.39 -0.60 -7.34 16 4 N -0.38 -5.44 4.01 -369.57 -1.48 -6.92 16 5 C 0.09 0.55 11.47 127.77 1.47 2.01 16 6 C 0.07 0.86 10.66 83.54 0.89 1.75 16 7 C -0.26 -4.13 5.22 -20.14 -0.11 -4.24 16 8 C 0.25 4.42 2.68 44.25 0.12 4.53 16 9 H 0.08 1.74 7.53 -2.38 -0.02 1.72 16 10 C -0.15 -2.51 9.47 71.98 0.68 -1.83 16 11 N -0.72 -12.88 5.05 -461.41 -2.33 -15.21 16 12 C 0.71 19.68 8.50 179.06 1.52 21.20 16 13 O -0.60 -20.62 13.13 -4.02 -0.05 -20.67 16 14 N -0.64 -18.75 5.45 -321.24 -1.75 -20.51 16 15 C 0.29 11.37 8.11 133.31 1.08 12.46 16 16 C -0.29 -11.51 9.61 22.10 0.21 -11.30 16 17 C 0.05 2.18 11.44 83.52 0.96 3.14 16 18 N -0.35 -16.34 3.67 -351.84 -1.29 -17.63 16 19 C 0.27 14.21 6.26 85.63 0.54 14.74 16 20 C -0.55 -30.77 9.23 25.60 0.24 -30.54 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.02 0.92 5.46 84.66 0.46 1.38 16 23 N -0.92 -52.24 13.29 21.45 0.28 -51.95 16 24 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 N -0.35 -16.14 12.42 -54.44 -0.68 -16.81 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 1.02 7.66 -2.39 -0.02 1.00 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.20 0.92 7.05 -2.91 -0.02 0.90 16 36 H 0.08 1.09 7.84 -2.38 -0.02 1.07 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.41 4.54 7.01 -92.71 -0.65 3.89 16 40 H 0.42 9.59 8.84 -92.71 -0.82 8.77 16 41 H 0.17 6.42 5.91 -2.91 -0.02 6.41 16 42 H 0.20 6.28 8.06 -2.91 -0.02 6.26 16 43 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 45 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -77.56 385.22 2.80 -74.77 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.43 Total: 22.06 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 9.10 Total: 14.70 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -7.84 Total: -136.37 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.56 2.80 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172371250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.921 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds