Wall clock time and date at job start Tue Mar 31 2020 17:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30838 * 125.90226 * 2 1 4 4 N 1.40081 * 108.20834 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03790 * 180.02562 * 4 3 2 6 6 C 1.34946 * 107.92362 * 359.75760 * 4 3 2 7 7 C 1.50706 * 126.12596 * 180.23844 * 6 4 3 8 8 C 1.35315 * 107.74705 * 0.39247 * 6 4 3 9 9 C 1.50703 * 126.03717 * 179.87239 * 8 6 4 10 10 N 1.46499 * 109.47138 * 269.71258 * 9 8 6 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 8 12 12 O 1.21593 * 120.00264 * 359.72086 * 11 10 9 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 9 14 14 C 1.40194 * 119.99802 * 179.97438 * 13 11 10 15 15 C 1.40400 * 125.97293 * 359.72185 * 14 13 11 16 16 C 1.35248 * 107.86725 * 179.82137 * 15 14 13 17 17 N 1.34963 * 107.85681 * 0.43345 * 16 15 14 18 18 C 1.46504 * 125.97615 * 179.70559 * 17 16 15 19 19 C 1.50702 * 109.47233 * 124.99704 * 18 17 16 20 20 H 1.07992 * 119.99696 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99833 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00146 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47315 * 59.99522 * 23 21 19 25 25 H 1.48499 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47164 * 299.99581 * 23 21 19 27 27 N 1.31217 * 125.97300 * 180.02562 * 14 13 11 28 28 H 1.08999 * 109.47148 * 270.02358 * 1 2 3 29 29 H 1.08996 * 109.47163 * 30.02691 * 1 2 3 30 30 H 1.09000 * 109.47339 * 150.02412 * 1 2 3 31 31 H 1.08993 * 109.47053 * 89.96972 * 5 4 3 32 32 H 1.09001 * 109.47136 * 209.97913 * 5 4 3 33 33 H 1.09010 * 109.46517 * 329.96998 * 5 4 3 34 34 H 1.08996 * 109.47081 * 270.17808 * 7 6 4 35 35 H 1.08998 * 109.47077 * 30.17770 * 7 6 4 36 36 H 1.09000 * 109.47078 * 150.17494 * 7 6 4 37 37 H 1.09009 * 109.46601 * 149.71161 * 9 8 6 38 38 H 1.08998 * 109.47035 * 29.71669 * 9 8 6 39 39 H 0.97001 * 119.99790 * 359.97438 * 10 9 8 40 40 H 0.97000 * 120.00523 * 0.02562 * 13 11 10 41 41 H 1.07998 * 126.06762 * 359.97438 * 15 14 13 42 42 H 1.08003 * 126.06911 * 180.13729 * 16 15 14 43 43 H 1.09000 * 109.47116 * 244.99960 * 18 17 16 44 44 H 1.08999 * 109.46767 * 4.99583 * 18 17 16 45 45 H 0.96998 * 119.99958 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1330 0.0005 9 6 1.8599 -2.5658 0.0012 10 7 1.7092 -3.0309 -1.3798 11 6 1.2931 -4.2891 -1.6255 12 8 1.0477 -5.0397 -0.7009 13 7 1.1490 -4.7152 -2.8960 14 6 0.7167 -6.0241 -3.1515 15 6 0.4056 -6.9934 -2.1847 16 6 0.0264 -8.1186 -2.8323 17 7 0.1026 -7.8786 -4.1582 18 6 -0.2138 -8.8317 -5.2249 19 6 -1.2432 -8.2304 -6.1469 20 1 -1.6232 -7.2375 -5.9574 21 6 -1.6996 -8.9479 -7.2321 22 7 -1.2363 -10.1569 -7.4631 23 14 -2.9749 -8.2022 -8.3753 24 1 -2.4355 -6.9538 -8.9716 25 1 -3.2957 -9.1683 -9.4564 26 1 -4.2071 -7.8915 -7.6068 27 7 0.5375 -6.5591 -4.3362 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 5.0820 1.7159 1.0291 32 1 5.6097 0.9980 -0.5119 33 1 4.5567 2.4331 -0.5130 34 1 5.1345 -1.8138 -1.0116 35 1 5.6485 -1.0901 0.5312 36 1 4.6049 -2.5320 0.5285 37 1 0.9008 -2.6350 0.5147 38 1 2.5931 -3.1868 0.5158 39 1 1.9046 -2.4319 -2.1174 40 1 1.3452 -4.1165 -3.6336 41 1 0.4573 -6.8629 -1.1139 42 1 -0.2782 -9.0461 -2.3704 43 1 0.6906 -9.0591 -5.7891 44 1 -0.6092 -9.7485 -4.7875 45 1 -1.5571 -10.6615 -8.2268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173355210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:57 Heat of formation + Delta-G solvation = 129.042637 kcal Electronic energy + Delta-G solvation = -27157.413059 eV Core-core repulsion = 23213.877925 eV Total energy + Delta-G solvation = -3943.535134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.81225 -40.60604 -39.40756 -35.52844 -34.57315 -34.31477 -33.31375 -32.35474 -30.81912 -29.91528 -29.23953 -28.44023 -26.65617 -26.21437 -24.62945 -22.99652 -21.60465 -20.33315 -20.20512 -19.90828 -19.60550 -17.94610 -16.90835 -16.55218 -16.48807 -16.19794 -15.58857 -15.44594 -14.70236 -14.55305 -14.41203 -14.14293 -14.01735 -13.80857 -13.76191 -13.61765 -13.25726 -13.05344 -12.73417 -12.64843 -12.37803 -12.29672 -12.26362 -12.16394 -12.09175 -11.70543 -11.03016 -10.84561 -10.81357 -10.38110 -10.22051 -10.03444 -9.65052 -9.45937 -9.42210 -9.10992 -8.77697 -8.59548 -8.03493 -7.34685 -6.20896 -4.25784 1.40782 2.06418 2.13557 2.72505 2.75548 3.19483 3.27928 3.30945 3.35775 3.76749 3.91862 4.03874 4.17621 4.33001 4.47192 4.52867 4.66302 4.72428 4.85567 4.92234 4.94779 5.03588 5.14043 5.19396 5.36563 5.37917 5.53462 5.63554 5.65911 5.74388 5.86783 5.87772 6.29477 6.32540 6.39282 6.60325 6.60826 6.68019 6.93366 7.07132 7.18212 7.36741 7.57398 7.73435 7.88250 8.05986 8.12506 8.69211 8.72426 8.85078 9.39554 10.87667 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.002010 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.879732 B =13924.664306 C =14411.572979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.096 3.904 3 N -0.299 5.299 4 N -0.375 5.375 5 C 0.101 3.899 6 C 0.110 3.890 7 C -0.097 4.097 8 C -0.261 4.261 9 C 0.224 3.776 10 N -0.740 5.740 11 C 0.712 3.288 12 O -0.569 6.569 13 N -0.645 5.645 14 C 0.277 3.723 15 C -0.286 4.286 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.259 3.741 19 C -0.527 4.527 20 H 0.068 0.932 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.309 5.309 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.396 0.604 40 H 0.406 0.594 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 20.730 16.555 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 N -0.121 5.121 4 N -0.156 5.156 5 C -0.041 4.041 6 C -0.019 4.019 7 C -0.156 4.156 8 C -0.273 4.273 9 C 0.099 3.901 10 N -0.397 5.397 11 C 0.412 3.588 12 O -0.445 6.445 13 N -0.295 5.295 14 C 0.023 3.977 15 C -0.317 4.317 16 C -0.100 4.100 17 N -0.103 5.103 18 C 0.142 3.858 19 C -0.566 4.566 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 N -0.141 5.141 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.229 0.771 40 H 0.240 0.760 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.277 21.369 15.951 29.356 hybrid contribution -0.417 0.048 -0.618 0.747 sum 11.859 21.417 15.333 28.886 Atomic orbital electron populations 1.20248 0.86390 1.03698 1.03290 1.22280 0.96975 0.90004 0.97834 1.77383 0.86056 1.22415 1.26252 1.48371 1.05733 1.04127 1.57351 1.21855 0.83808 0.95009 1.03400 1.20972 0.96990 0.84578 0.99359 1.20548 0.92691 0.98517 1.03807 1.19671 0.91348 0.95802 1.20493 1.19205 1.01250 0.87964 0.81658 1.45228 1.73269 1.12106 1.09089 1.15651 0.78510 0.82157 0.82525 1.90864 1.56333 1.54318 1.42970 1.41415 1.69613 1.11423 1.07016 1.18793 1.00966 0.85177 0.92788 1.21516 1.16954 0.92290 1.00971 1.22553 1.02195 1.00312 0.84935 1.49036 1.47293 1.08174 1.05832 1.19715 0.97415 0.85170 0.83547 1.21227 1.22789 1.02653 1.09913 0.91364 1.24945 0.96941 0.94813 0.97429 1.69910 1.43399 1.10650 1.29466 0.86387 0.81303 0.78909 0.79890 1.19980 1.21089 1.20044 1.77323 1.24831 0.93451 1.18444 0.90236 0.90796 0.89975 0.90724 0.89426 0.89145 0.89761 0.90998 0.89054 0.90707 0.91057 0.77081 0.75985 0.82156 0.81597 0.93808 0.92576 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.12 36.00 0.36 -0.24 16 2 C 0.10 0.94 7.22 -82.41 -0.59 0.35 16 3 N -0.30 -3.23 12.58 33.67 0.42 -2.80 16 4 N -0.37 -3.15 4.01 -63.88 -0.26 -3.40 16 5 C 0.10 0.43 11.09 59.85 0.66 1.09 16 6 C 0.11 0.87 6.93 -82.26 -0.57 0.30 16 7 C -0.10 -0.49 9.68 36.01 0.35 -0.14 16 8 C -0.26 -2.36 5.47 -105.05 -0.57 -2.94 16 9 C 0.22 2.13 5.61 -5.19 -0.03 2.11 16 10 N -0.74 -7.66 5.55 -66.41 -0.37 -8.03 16 11 C 0.71 10.44 8.53 -86.92 -0.74 9.70 16 12 O -0.57 -10.19 13.47 5.28 0.07 -10.12 16 13 N -0.64 -10.12 5.46 -15.50 -0.08 -10.20 16 14 C 0.28 5.63 8.11 -154.36 -1.25 4.38 16 15 C -0.29 -5.77 9.61 -39.83 -0.38 -6.15 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 18 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 19 C -0.53 -14.78 9.24 -34.44 -0.32 -15.10 16 20 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 23 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.18 7.67 -51.93 -0.40 -0.21 16 33 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.24 7.74 -51.93 -0.40 -0.17 16 36 H 0.09 0.47 7.14 -51.93 -0.37 0.10 16 37 H 0.07 0.76 7.92 -51.92 -0.41 0.35 16 38 H 0.07 0.68 7.14 -51.93 -0.37 0.31 16 39 H 0.40 3.35 8.48 -40.82 -0.35 3.01 16 40 H 0.41 5.22 8.84 -40.82 -0.36 4.86 16 41 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 42 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 43 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -35.52 385.91 -8.24 -43.76 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.30 Total: 5.44 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.41 Total: 2.39 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.61 Total: -63.76 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.52 -8.24 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.798 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds