Wall clock time and date at job start Tue Mar 31 2020 17:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30838 * 125.90226 * 2 1 4 4 N 1.40081 * 108.20834 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03790 * 180.02562 * 4 3 2 6 6 C 1.34946 * 107.92362 * 359.75760 * 4 3 2 7 7 C 1.50706 * 126.12596 * 180.23844 * 6 4 3 8 8 C 1.35315 * 107.74705 * 0.39247 * 6 4 3 9 9 C 1.50703 * 126.03717 * 179.87239 * 8 6 4 10 10 N 1.46499 * 109.47138 * 269.71258 * 9 8 6 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 8 12 12 O 1.21593 * 120.00264 * 359.72086 * 11 10 9 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 9 14 14 C 1.40194 * 119.99802 * 179.97438 * 13 11 10 15 15 C 1.40400 * 125.97293 * 359.72185 * 14 13 11 16 16 C 1.35248 * 107.86725 * 179.82137 * 15 14 13 17 17 N 1.34963 * 107.85681 * 0.43345 * 16 15 14 18 18 C 1.46504 * 125.97615 * 179.70559 * 17 16 15 19 19 C 1.50702 * 109.47233 * 124.99704 * 18 17 16 20 20 H 1.07992 * 119.99696 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99833 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00146 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47315 * 59.99522 * 23 21 19 25 25 H 1.48499 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47164 * 299.99581 * 23 21 19 27 27 N 1.31217 * 125.97300 * 180.02562 * 14 13 11 28 28 H 1.08999 * 109.47148 * 270.02358 * 1 2 3 29 29 H 1.08996 * 109.47163 * 30.02691 * 1 2 3 30 30 H 1.09000 * 109.47339 * 150.02412 * 1 2 3 31 31 H 1.08993 * 109.47053 * 89.96972 * 5 4 3 32 32 H 1.09001 * 109.47136 * 209.97913 * 5 4 3 33 33 H 1.09010 * 109.46517 * 329.96998 * 5 4 3 34 34 H 1.08996 * 109.47081 * 270.17808 * 7 6 4 35 35 H 1.08998 * 109.47077 * 30.17770 * 7 6 4 36 36 H 1.09000 * 109.47078 * 150.17494 * 7 6 4 37 37 H 1.09009 * 109.46601 * 149.71161 * 9 8 6 38 38 H 1.08998 * 109.47035 * 29.71669 * 9 8 6 39 39 H 0.97001 * 119.99790 * 359.97438 * 10 9 8 40 40 H 0.97000 * 120.00523 * 0.02562 * 13 11 10 41 41 H 1.07998 * 126.06762 * 359.97438 * 15 14 13 42 42 H 1.08003 * 126.06911 * 180.13729 * 16 15 14 43 43 H 1.09000 * 109.47116 * 244.99960 * 18 17 16 44 44 H 1.08999 * 109.46767 * 4.99583 * 18 17 16 45 45 H 0.96998 * 119.99958 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1330 0.0005 9 6 1.8599 -2.5658 0.0012 10 7 1.7092 -3.0309 -1.3798 11 6 1.2931 -4.2891 -1.6255 12 8 1.0477 -5.0397 -0.7009 13 7 1.1490 -4.7152 -2.8960 14 6 0.7167 -6.0241 -3.1515 15 6 0.4056 -6.9934 -2.1847 16 6 0.0264 -8.1186 -2.8323 17 7 0.1026 -7.8786 -4.1582 18 6 -0.2138 -8.8317 -5.2249 19 6 -1.2432 -8.2304 -6.1469 20 1 -1.6232 -7.2375 -5.9574 21 6 -1.6996 -8.9479 -7.2321 22 7 -1.2363 -10.1569 -7.4631 23 14 -2.9749 -8.2022 -8.3753 24 1 -2.4355 -6.9538 -8.9716 25 1 -3.2957 -9.1683 -9.4564 26 1 -4.2071 -7.8915 -7.6068 27 7 0.5375 -6.5591 -4.3362 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 5.0820 1.7159 1.0291 32 1 5.6097 0.9980 -0.5119 33 1 4.5567 2.4331 -0.5130 34 1 5.1345 -1.8138 -1.0116 35 1 5.6485 -1.0901 0.5312 36 1 4.6049 -2.5320 0.5285 37 1 0.9008 -2.6350 0.5147 38 1 2.5931 -3.1868 0.5158 39 1 1.9046 -2.4319 -2.1174 40 1 1.3452 -4.1165 -3.6336 41 1 0.4573 -6.8629 -1.1139 42 1 -0.2782 -9.0461 -2.3704 43 1 0.6906 -9.0591 -5.7891 44 1 -0.6092 -9.7485 -4.7875 45 1 -1.5571 -10.6615 -8.2268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173355210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:53 Heat of formation + Delta-G solvation = 104.900271 kcal Electronic energy + Delta-G solvation = -27158.459950 eV Core-core repulsion = 23213.877925 eV Total energy + Delta-G solvation = -3944.582025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -42.46672 -42.12170 -40.72474 -36.55096 -35.93252 -35.23329 -34.96621 -33.20505 -32.44331 -30.88400 -30.46035 -29.24094 -28.35551 -26.90901 -25.45523 -24.74942 -22.92725 -21.88247 -21.30136 -20.69937 -20.46070 -19.12448 -18.65973 -18.18981 -17.38862 -17.08932 -16.74001 -16.67678 -16.24740 -15.82211 -15.55794 -15.39977 -15.02205 -14.64238 -14.44302 -14.32754 -14.22914 -13.97221 -13.95184 -13.74633 -13.65722 -13.49977 -13.21282 -12.93726 -12.90126 -12.80415 -12.70596 -12.67538 -12.25424 -12.03146 -11.59777 -11.48963 -11.36078 -11.08634 -10.69675 -10.11898 -10.04530 -9.66299 -9.43875 -8.99092 -8.30143 -6.44273 0.77080 1.12381 1.16721 1.39730 1.41683 1.50352 1.58479 1.66949 1.77924 2.26895 2.40185 2.49082 3.01061 3.31554 3.50201 3.66857 4.02376 4.05432 4.13556 4.32683 4.33727 4.36332 4.40067 4.59617 4.62624 4.69445 4.77721 4.77877 4.86287 4.94922 5.00254 5.00821 5.06293 5.08299 5.11738 5.20043 5.24186 5.52841 5.59562 5.67570 5.80758 5.94340 6.04071 6.08768 6.34151 6.67132 6.71546 6.82872 7.21340 7.25374 7.51264 8.76826 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.002010 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.879732 B =13924.664306 C =14411.572979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.335 5.335 4 N -0.377 5.377 5 C 0.090 3.910 6 C 0.116 3.884 7 C -0.096 4.096 8 C -0.277 4.277 9 C 0.229 3.771 10 N -0.717 5.717 11 C 0.713 3.287 12 O -0.600 6.600 13 N -0.638 5.638 14 C 0.286 3.714 15 C -0.291 4.291 16 C 0.055 3.945 17 N -0.346 5.346 18 C 0.273 3.727 19 C -0.547 4.547 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.270 1.270 27 N -0.350 5.350 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.419 0.581 41 H 0.168 0.832 42 H 0.200 0.800 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 21.861 17.050 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 N -0.157 5.157 4 N -0.158 5.158 5 C -0.049 4.049 6 C -0.014 4.014 7 C -0.154 4.154 8 C -0.289 4.289 9 C 0.106 3.894 10 N -0.373 5.373 11 C 0.413 3.587 12 O -0.478 6.478 13 N -0.290 5.290 14 C 0.031 3.969 15 C -0.322 4.322 16 C -0.093 4.093 17 N -0.128 5.128 18 C 0.154 3.846 19 C -0.585 4.585 20 H 0.070 0.930 21 C -0.183 4.183 22 N -0.559 5.559 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.181 5.181 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.243 0.757 40 H 0.256 0.744 41 H 0.185 0.815 42 H 0.217 0.783 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.965 22.571 16.459 30.796 hybrid contribution -0.504 -0.186 -0.646 0.840 sum 12.460 22.385 15.813 30.107 Atomic orbital electron populations 1.20270 0.85659 1.03701 1.03817 1.22573 0.97737 0.90185 0.97634 1.77321 0.87443 1.23321 1.27660 1.48704 1.05821 1.04774 1.56489 1.22196 0.83115 0.94942 1.04679 1.21409 0.97599 0.84805 0.97585 1.20660 0.92047 0.98066 1.04671 1.19612 0.91944 0.95087 1.22243 1.19187 1.01080 0.88469 0.80701 1.45124 1.71490 1.10548 1.10142 1.15759 0.78325 0.83016 0.81614 1.90837 1.57748 1.55545 1.43686 1.41422 1.69353 1.10068 1.08112 1.19087 0.99137 0.86676 0.92041 1.21694 1.17031 0.92303 1.01217 1.23156 1.00736 1.01699 0.83733 1.48796 1.49320 1.08355 1.06332 1.19316 0.95755 0.85696 0.83819 1.21376 1.23757 1.02208 1.11133 0.92972 1.25738 0.98699 0.95181 0.98660 1.69988 1.44295 1.11564 1.30065 0.85413 0.78810 0.78209 0.78070 1.19889 1.19833 1.19495 1.77244 1.26925 0.93846 1.20105 0.89453 0.90649 0.90022 0.89447 0.86870 0.89099 0.88847 0.88819 0.89113 0.91335 0.90737 0.75670 0.74434 0.81454 0.78308 0.96108 0.92385 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.12 71.24 0.72 -0.43 16 2 C 0.08 1.61 7.22 43.10 0.31 1.92 16 3 N -0.33 -6.98 12.58 -47.39 -0.60 -7.58 16 4 N -0.38 -5.71 4.01 -356.02 -1.43 -7.14 16 5 C 0.09 0.58 11.09 127.77 1.42 1.99 16 6 C 0.12 1.62 6.93 41.41 0.29 1.91 16 7 C -0.10 -0.71 9.68 71.24 0.69 -0.02 16 8 C -0.28 -4.67 5.47 -20.14 -0.11 -4.78 16 9 C 0.23 4.10 5.61 85.63 0.48 4.58 16 10 N -0.72 -13.77 5.55 -482.28 -2.68 -16.44 16 11 C 0.71 20.05 8.53 179.05 1.53 21.57 16 12 O -0.60 -20.89 13.47 -4.01 -0.05 -20.94 16 13 N -0.64 -19.41 5.46 -321.23 -1.75 -21.17 16 14 C 0.29 11.53 8.11 133.31 1.08 12.61 16 15 C -0.29 -11.54 9.61 22.11 0.21 -11.33 16 16 C 0.06 2.20 11.44 83.52 0.96 3.16 16 17 N -0.35 -16.43 3.67 -351.82 -1.29 -17.72 16 18 C 0.27 14.29 6.26 85.63 0.54 14.82 16 19 C -0.55 -31.07 9.24 25.60 0.24 -30.83 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 21 C 0.02 0.97 5.46 84.65 0.46 1.44 16 22 N -0.92 -52.41 13.29 21.45 0.28 -52.13 16 23 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 N -0.35 -16.43 12.42 -54.43 -0.68 -17.10 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.21 7.92 -2.39 -0.02 1.19 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 0.13 7.67 -2.39 -0.02 0.11 16 33 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.29 7.74 -2.39 -0.02 0.27 16 36 H 0.09 0.72 7.14 -2.39 -0.02 0.70 16 37 H 0.07 1.34 7.92 -2.38 -0.02 1.32 16 38 H 0.07 1.32 7.14 -2.39 -0.02 1.30 16 39 H 0.41 6.18 8.48 -92.71 -0.79 5.39 16 40 H 0.42 10.32 8.84 -92.71 -0.82 9.50 16 41 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 42 H 0.20 6.29 8.06 -2.91 -0.02 6.27 16 43 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 45 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.53 385.91 2.08 -74.45 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.56 Total: 23.24 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 8.81 Total: 16.63 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -8.14 Total: -139.27 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.53 2.08 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.350 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds