Wall clock time and date at job start Tue Mar 31 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46692 * 2 1 4 4 C 1.52993 * 109.47348 * 239.99625 * 2 1 3 5 5 N 1.46493 * 109.46881 * 119.99402 * 2 1 3 6 6 N 1.40067 * 126.04871 * 239.97740 * 5 2 1 7 7 C 1.30842 * 108.37737 * 180.02562 * 6 5 2 8 8 C 1.39762 * 108.32045 * 359.78009 * 7 6 5 9 9 C 1.35254 * 126.04683 * 60.00532 * 5 2 1 10 10 N 1.39491 * 126.21120 * 359.94165 * 9 5 2 11 11 C 1.34779 * 119.99481 * 180.02562 * 10 9 5 12 12 O 1.21595 * 120.00226 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99582 * 180.02562 * 11 10 9 14 14 C 1.40190 * 120.00010 * 179.97438 * 13 11 10 15 15 C 1.40403 * 125.97004 * 359.97438 * 14 13 11 16 16 C 1.35240 * 107.86204 * 179.71956 * 15 14 13 17 17 N 1.34960 * 107.86397 * 0.42109 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83773 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.97376 * 179.97438 * 14 13 11 28 28 H 1.08989 * 109.47597 * 300.00237 * 1 2 3 29 29 H 1.09006 * 109.47101 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46920 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46899 * 299.99574 * 3 2 1 33 33 H 1.08997 * 109.47045 * 59.99804 * 3 2 1 34 34 H 1.09000 * 109.47606 * 300.00033 * 4 2 1 35 35 H 1.09001 * 109.47418 * 60.00261 * 4 2 1 36 36 H 1.09003 * 109.47000 * 179.97438 * 4 2 1 37 37 H 1.08000 * 125.84101 * 180.02562 * 7 6 5 38 38 H 1.07997 * 126.08817 * 180.25170 * 8 7 6 39 39 H 0.96998 * 120.00417 * 359.97438 * 10 9 5 40 40 H 0.97003 * 120.00469 * 359.97438 * 13 11 10 41 41 H 1.07994 * 126.06764 * 359.97438 * 15 14 13 42 42 H 1.08007 * 126.06652 * 180.26202 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 7 2.8272 -0.1353 2.1959 7 6 3.0558 -1.0540 3.0990 8 6 2.3980 -2.2246 2.7113 9 6 1.7681 -1.9770 1.5304 10 7 0.9993 -2.8835 0.8004 11 6 0.8310 -4.1419 1.2529 12 8 1.3496 -4.4870 2.2971 13 7 0.0886 -5.0179 0.5473 14 6 -0.0861 -6.3270 1.0175 15 6 0.4525 -6.8569 2.2009 16 6 0.0499 -8.1442 2.2998 17 7 -0.7066 -8.4257 1.2182 18 6 -1.3429 -9.7121 0.9241 19 6 -2.8217 -9.5059 0.7195 20 1 -3.2450 -8.5157 0.8000 21 6 -3.6341 -10.5815 0.4294 22 7 -3.1177 -11.7866 0.3261 23 14 -5.4670 -10.3259 0.1751 24 1 -6.1111 -11.6289 -0.1288 25 1 -6.0631 -9.7550 1.4097 26 1 -5.6838 -9.3904 -0.9575 27 7 -0.7816 -7.2711 0.4287 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 3.6480 -0.9281 3.9934 38 1 2.3921 -3.1598 3.2515 39 1 0.5852 -2.6080 -0.0324 40 1 -0.3249 -4.7427 -0.2859 41 1 1.0742 -6.3290 2.9087 42 1 0.2931 -8.8267 3.1008 43 1 -1.1834 -10.3955 1.7581 44 1 -0.9064 -10.1349 0.0193 45 1 -2.1659 -11.9194 0.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190451267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:18 Heat of formation + Delta-G solvation = 145.971731 kcal Electronic energy + Delta-G solvation = -27989.770558 eV Core-core repulsion = 24046.969525 eV Total energy + Delta-G solvation = -3942.801033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91898 -40.81284 -39.66484 -37.20680 -35.32637 -34.89301 -33.71384 -31.03657 -30.40754 -29.49220 -28.94973 -28.01095 -27.82506 -26.31810 -23.71929 -22.79714 -22.43094 -21.33599 -20.60056 -20.08725 -19.68708 -17.95294 -17.51066 -17.22405 -16.56335 -16.14115 -15.67359 -15.41206 -15.20088 -14.78072 -14.61581 -14.27802 -13.94539 -13.86652 -13.76408 -13.31571 -13.20178 -12.88418 -12.74487 -12.53699 -12.47472 -12.36305 -12.31942 -11.89977 -11.72212 -11.61654 -11.31173 -11.17092 -10.84849 -10.75177 -10.56630 -10.18965 -10.15129 -9.79754 -9.15507 -9.05119 -8.61399 -8.34701 -8.16869 -7.57064 -6.61109 -4.35443 1.62057 1.65443 2.40366 2.47075 2.78425 3.02498 3.28094 3.35583 3.36750 3.56097 3.64253 3.94801 3.99023 4.21690 4.32706 4.38179 4.72389 4.86845 4.88797 5.07308 5.08651 5.12594 5.16685 5.22963 5.30435 5.35866 5.40158 5.50976 5.61313 5.62701 5.74457 5.84991 6.01672 6.02343 6.35522 6.38051 6.56786 6.64076 6.71962 6.75406 6.96144 7.27360 7.48731 7.63192 7.72758 7.78208 8.24244 8.30338 8.47182 8.57922 9.32728 10.76469 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002293 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.581504 B =12209.205813 C =13045.337440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 C -0.137 4.137 4 C -0.165 4.165 5 N -0.380 5.380 6 N -0.293 5.293 7 C 0.058 3.942 8 C -0.280 4.280 9 C 0.330 3.670 10 N -0.660 5.660 11 C 0.721 3.279 12 O -0.533 6.533 13 N -0.635 5.635 14 C 0.274 3.726 15 C -0.282 4.282 16 C 0.053 3.947 17 N -0.316 5.316 18 C 0.249 3.751 19 C -0.608 4.608 20 H 0.063 0.937 21 C 0.023 3.977 22 N -0.904 5.904 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.301 5.301 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.405 0.595 40 H 0.409 0.591 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 23.926 -1.115 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.093 3.907 3 C -0.195 4.195 4 C -0.223 4.223 5 N -0.169 5.169 6 N -0.115 5.115 7 C -0.128 4.128 8 C -0.312 4.312 9 C 0.110 3.890 10 N -0.313 5.313 11 C 0.419 3.581 12 O -0.405 6.405 13 N -0.285 5.285 14 C 0.020 3.980 15 C -0.313 4.313 16 C -0.097 4.097 17 N -0.098 5.098 18 C 0.131 3.869 19 C -0.647 4.647 20 H 0.081 0.919 21 C -0.182 4.182 22 N -0.539 5.539 23 Si 0.903 3.097 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.132 5.132 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.243 0.757 40 H 0.244 0.756 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.832 23.585 -2.025 25.265 hybrid contribution 1.266 0.352 0.321 1.352 sum 10.097 23.936 -1.704 26.035 Atomic orbital electron populations 1.22346 0.93045 1.02825 1.04099 1.20737 0.94073 0.94244 0.81619 1.21832 1.02560 0.92222 1.02872 1.22343 1.02945 1.00434 0.96568 1.48884 1.42080 1.06210 1.19713 1.77403 1.13362 1.21283 0.99409 1.23764 0.99263 0.91218 0.98586 1.21695 1.08774 1.02564 0.98183 1.17543 0.95753 0.82534 0.93174 1.42023 1.53109 1.09837 1.26318 1.15223 0.79965 0.79342 0.83531 1.90832 1.51046 1.76068 1.22547 1.41169 1.52769 1.08382 1.26152 1.18694 0.99781 0.84422 0.95073 1.21520 1.13470 0.94795 1.01534 1.22576 0.96360 0.97427 0.93346 1.48790 1.36390 1.09770 1.14859 1.19777 0.94523 0.75257 0.97337 1.22093 0.91011 0.97529 1.54029 0.91854 1.25921 1.06936 0.92050 0.93277 1.70853 1.15125 1.22487 1.45471 0.83422 0.73560 0.75890 0.76786 1.20503 1.21221 1.21167 1.77350 1.23984 0.92445 1.19371 0.91058 0.89767 0.92355 0.91173 0.91004 0.91165 0.92363 0.89772 0.91085 0.79859 0.80766 0.75747 0.75641 0.81864 0.81363 0.93522 0.94735 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.47 37.16 0.31 -0.68 16 2 C 0.18 1.29 1.06 -131.82 -0.14 1.15 16 3 C -0.14 -0.89 7.98 37.16 0.30 -0.59 16 4 C -0.16 -0.98 8.47 37.15 0.31 -0.66 16 5 N -0.38 -4.01 3.47 -47.71 -0.17 -4.18 16 6 N -0.29 -3.45 11.63 30.60 0.36 -3.09 16 7 C 0.06 0.64 12.01 -17.40 -0.21 0.44 16 8 C -0.28 -3.64 9.65 -39.78 -0.38 -4.03 16 9 C 0.33 3.96 7.00 -153.15 -1.07 2.89 16 10 N -0.66 -7.07 4.72 -15.84 -0.07 -7.14 16 11 C 0.72 10.10 8.50 -86.92 -0.74 9.36 16 12 O -0.53 -8.89 10.59 5.28 0.06 -8.83 16 13 N -0.63 -9.18 5.45 -15.50 -0.08 -9.27 16 14 C 0.27 5.26 8.11 -154.36 -1.25 4.01 16 15 C -0.28 -5.36 9.61 -39.83 -0.38 -5.74 16 16 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 17 N -0.32 -7.19 3.67 -62.56 -0.23 -7.42 16 18 C 0.25 6.17 5.57 -5.19 -0.03 6.15 16 19 C -0.61 -16.82 9.24 -34.44 -0.32 -17.14 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 22 N -0.90 -26.00 13.65 55.43 0.76 -25.24 16 23 Si 1.08 24.57 29.90 -169.99 -5.08 19.49 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 N -0.30 -6.71 12.42 31.44 0.39 -6.32 16 28 H 0.07 0.51 8.14 -51.94 -0.42 0.09 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 5.88 -51.93 -0.31 0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.35 5.88 -51.93 -0.31 0.04 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.18 2.51 5.82 -52.49 -0.31 2.21 16 39 H 0.40 3.10 4.95 -40.82 -0.20 2.90 16 40 H 0.41 4.61 8.84 -40.82 -0.36 4.25 16 41 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 42 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 43 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 44 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 45 H 0.27 7.51 7.22 -40.82 -0.29 7.21 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -34.12 370.77 -8.31 -42.43 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.92 Total: 7.50 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.89 Total: -3.51 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.95 Total: -62.66 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.12 -8.31 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190451267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.401 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds