Wall clock time and date at job start Tue Mar 31 2020 18:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46692 * 2 1 4 4 C 1.52993 * 109.47348 * 239.99625 * 2 1 3 5 5 N 1.46493 * 109.46881 * 119.99402 * 2 1 3 6 6 N 1.40067 * 126.04871 * 239.97740 * 5 2 1 7 7 C 1.30842 * 108.37737 * 180.02562 * 6 5 2 8 8 C 1.39762 * 108.32045 * 359.78009 * 7 6 5 9 9 C 1.35254 * 126.04683 * 60.00532 * 5 2 1 10 10 N 1.39491 * 126.21120 * 359.94165 * 9 5 2 11 11 C 1.34779 * 119.99481 * 180.02562 * 10 9 5 12 12 O 1.21595 * 120.00226 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99582 * 180.02562 * 11 10 9 14 14 C 1.40190 * 120.00010 * 179.97438 * 13 11 10 15 15 C 1.40403 * 125.97004 * 359.97438 * 14 13 11 16 16 C 1.35240 * 107.86204 * 179.71956 * 15 14 13 17 17 N 1.34960 * 107.86397 * 0.42109 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83773 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.97376 * 179.97438 * 14 13 11 28 28 H 1.08989 * 109.47597 * 300.00237 * 1 2 3 29 29 H 1.09006 * 109.47101 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46920 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46899 * 299.99574 * 3 2 1 33 33 H 1.08997 * 109.47045 * 59.99804 * 3 2 1 34 34 H 1.09000 * 109.47606 * 300.00033 * 4 2 1 35 35 H 1.09001 * 109.47418 * 60.00261 * 4 2 1 36 36 H 1.09003 * 109.47000 * 179.97438 * 4 2 1 37 37 H 1.08000 * 125.84101 * 180.02562 * 7 6 5 38 38 H 1.07997 * 126.08817 * 180.25170 * 8 7 6 39 39 H 0.96998 * 120.00417 * 359.97438 * 10 9 5 40 40 H 0.97003 * 120.00469 * 359.97438 * 13 11 10 41 41 H 1.07994 * 126.06764 * 359.97438 * 15 14 13 42 42 H 1.08007 * 126.06652 * 180.26202 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 7 2.8272 -0.1353 2.1959 7 6 3.0558 -1.0540 3.0990 8 6 2.3980 -2.2246 2.7113 9 6 1.7681 -1.9770 1.5304 10 7 0.9993 -2.8835 0.8004 11 6 0.8310 -4.1419 1.2529 12 8 1.3496 -4.4870 2.2971 13 7 0.0886 -5.0179 0.5473 14 6 -0.0861 -6.3270 1.0175 15 6 0.4525 -6.8569 2.2009 16 6 0.0499 -8.1442 2.2998 17 7 -0.7066 -8.4257 1.2182 18 6 -1.3429 -9.7121 0.9241 19 6 -2.8217 -9.5059 0.7195 20 1 -3.2450 -8.5157 0.8000 21 6 -3.6341 -10.5815 0.4294 22 7 -3.1177 -11.7866 0.3261 23 14 -5.4670 -10.3259 0.1751 24 1 -6.1111 -11.6289 -0.1288 25 1 -6.0631 -9.7550 1.4097 26 1 -5.6838 -9.3904 -0.9575 27 7 -0.7816 -7.2711 0.4287 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 3.6480 -0.9281 3.9934 38 1 2.3921 -3.1598 3.2515 39 1 0.5852 -2.6080 -0.0324 40 1 -0.3249 -4.7427 -0.2859 41 1 1.0742 -6.3290 2.9087 42 1 0.2931 -8.8267 3.1008 43 1 -1.1834 -10.3955 1.7581 44 1 -0.9064 -10.1349 0.0193 45 1 -2.1659 -11.9194 0.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190451267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:17 Heat of formation + Delta-G solvation = 125.095323 kcal Electronic energy + Delta-G solvation = -27990.675827 eV Core-core repulsion = 24046.969525 eV Total energy + Delta-G solvation = -3943.706302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.87516 -42.21448 -40.90139 -37.83371 -36.66483 -36.05612 -35.58567 -32.72452 -31.25906 -31.05101 -29.94133 -28.47095 -28.36166 -28.14531 -25.36043 -24.16523 -23.31768 -22.60527 -21.90403 -21.21046 -20.83103 -19.25922 -19.02974 -18.41794 -17.93012 -17.21513 -16.82358 -16.37117 -16.23999 -16.07462 -15.85090 -15.59202 -15.30847 -15.02272 -14.75015 -14.56168 -14.19379 -14.11327 -13.93612 -13.68481 -13.31660 -13.23789 -13.21039 -13.04021 -12.84528 -12.62985 -12.37687 -12.26750 -12.23342 -11.99638 -11.95299 -11.72637 -11.55463 -11.08186 -11.01261 -10.68526 -9.98050 -9.86875 -9.33574 -9.05040 -8.76010 -6.54655 0.54174 0.66290 1.04292 1.45987 1.51917 1.57726 1.58312 1.79426 1.93397 1.95095 2.28949 2.49206 2.78419 3.02383 3.37017 3.69167 3.81325 3.81724 4.01867 4.11386 4.19985 4.37873 4.43192 4.52675 4.58667 4.63748 4.66380 4.68048 4.76518 4.78412 4.81235 4.84160 4.84637 4.99932 5.07883 5.15032 5.26606 5.29049 5.51265 5.61824 5.76929 5.84290 5.93050 6.04619 6.27446 6.41048 6.44587 6.77178 6.95878 7.10729 7.20931 8.59791 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002293 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.581504 B =12209.205813 C =13045.337440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 C -0.133 4.133 4 C -0.162 4.162 5 N -0.373 5.373 6 N -0.306 5.306 7 C 0.057 3.943 8 C -0.305 4.305 9 C 0.322 3.678 10 N -0.640 5.640 11 C 0.723 3.277 12 O -0.559 6.559 13 N -0.625 5.625 14 C 0.286 3.714 15 C -0.286 4.286 16 C 0.057 3.943 17 N -0.343 5.343 18 C 0.259 3.741 19 C -0.620 4.620 20 H 0.046 0.954 21 C -0.019 4.019 22 N -0.924 5.924 23 Si 1.119 2.881 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.274 1.274 27 N -0.341 5.341 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.210 0.790 38 H 0.158 0.842 39 H 0.421 0.579 40 H 0.424 0.576 41 H 0.173 0.827 42 H 0.202 0.798 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 25.848 -1.788 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.083 3.917 3 C -0.190 4.190 4 C -0.221 4.221 5 N -0.162 5.162 6 N -0.128 5.128 7 C -0.129 4.129 8 C -0.337 4.337 9 C 0.100 3.900 10 N -0.293 5.293 11 C 0.422 3.578 12 O -0.432 6.432 13 N -0.277 5.277 14 C 0.030 3.970 15 C -0.317 4.317 16 C -0.091 4.091 17 N -0.125 5.125 18 C 0.140 3.860 19 C -0.658 4.658 20 H 0.065 0.935 21 C -0.219 4.219 22 N -0.560 5.560 23 Si 0.940 3.060 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.200 1.200 27 N -0.172 5.172 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.176 0.824 39 H 0.262 0.738 40 H 0.262 0.738 41 H 0.190 0.810 42 H 0.219 0.781 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.423 25.578 -2.730 27.067 hybrid contribution 1.519 -0.089 0.547 1.617 sum 9.942 25.489 -2.183 27.446 Atomic orbital electron populations 1.22368 0.91840 1.02960 1.04929 1.21173 0.95034 0.94638 0.80903 1.21825 1.01772 0.91757 1.03683 1.22364 1.02203 1.00588 0.96899 1.49210 1.41265 1.05629 1.20144 1.77368 1.13811 1.21746 0.99878 1.24160 0.99075 0.90314 0.99310 1.21704 1.10216 1.02716 0.99049 1.17581 0.95867 0.83279 0.93231 1.41685 1.52534 1.08476 1.26621 1.15261 0.79490 0.79975 0.83101 1.90824 1.51901 1.76790 1.23709 1.41071 1.52919 1.06854 1.26814 1.18943 0.97977 0.85427 0.94618 1.21720 1.13526 0.94787 1.01698 1.23185 0.94797 0.98195 0.92956 1.48563 1.38104 1.09463 1.16326 1.19429 0.93172 0.76623 0.96773 1.22283 0.92720 0.96759 1.54083 0.93548 1.27253 1.10709 0.91540 0.92409 1.70947 1.14937 1.23200 1.46900 0.82888 0.69239 0.76228 0.77655 1.20131 1.19695 1.19967 1.77267 1.26112 0.93113 1.20687 0.92343 0.86858 0.92505 0.92355 0.88120 0.92404 0.92471 0.86867 0.92289 0.77302 0.82449 0.73805 0.73797 0.81022 0.78130 0.92792 0.96478 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.47 71.98 0.61 -0.95 16 2 C 0.16 2.06 1.06 3.61 0.00 2.06 16 3 C -0.13 -1.45 7.98 71.98 0.57 -0.87 16 4 C -0.16 -1.51 8.47 71.98 0.61 -0.90 16 5 N -0.37 -7.46 3.47 -304.84 -1.06 -8.51 16 6 N -0.31 -6.96 11.63 -57.09 -0.66 -7.62 16 7 C 0.06 1.24 12.01 85.21 1.02 2.26 16 8 C -0.30 -7.88 9.65 22.14 0.21 -7.67 16 9 C 0.32 7.44 7.00 131.31 0.92 8.36 16 10 N -0.64 -12.84 4.72 -322.30 -1.52 -14.36 16 11 C 0.72 19.55 8.50 179.05 1.52 21.07 16 12 O -0.56 -18.41 10.59 -4.01 -0.04 -18.45 16 13 N -0.62 -17.39 5.45 -321.23 -1.75 -19.14 16 14 C 0.29 10.81 8.11 133.31 1.08 11.89 16 15 C -0.29 -10.67 9.61 22.11 0.21 -10.46 16 16 C 0.06 2.15 11.43 83.52 0.96 3.11 16 17 N -0.34 -15.63 3.67 -351.84 -1.29 -16.92 16 18 C 0.26 13.06 5.57 85.64 0.48 13.54 16 19 C -0.62 -34.65 9.24 25.60 0.24 -34.42 16 20 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 21 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 22 N -0.92 -53.40 13.65 21.45 0.29 -53.11 16 23 Si 1.12 48.91 29.90 68.60 2.05 50.97 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 N -0.34 -15.25 12.42 -54.43 -0.68 -15.93 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.43 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 35 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.16 4.63 5.82 -2.91 -0.02 4.62 16 39 H 0.42 5.59 4.95 -92.71 -0.46 5.13 16 40 H 0.42 8.94 8.84 -92.71 -0.82 8.12 16 41 H 0.17 6.15 5.91 -2.91 -0.02 6.13 16 42 H 0.20 5.98 8.06 -2.91 -0.02 5.95 16 43 H 0.05 2.61 7.94 -2.39 -0.02 2.59 16 44 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 45 H 0.26 14.91 7.22 -92.71 -0.67 14.24 16 Total: -1.00 -74.37 370.77 4.11 -70.26 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.13 Total: 26.42 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 8.90 Total: 6.40 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -6.67 Total: -135.60 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.97 kcal Total: -74.37 4.11 -70.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190451267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.357 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds