Wall clock time and date at job start Tue Mar 31 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35244 * 126.07048 * 2 1 4 4 C 1.40401 * 107.86868 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97600 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99728 * 0.02562 * 5 4 3 7 7 O 1.21589 * 119.99982 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99703 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47092 * 35.00228 * 9 8 6 11 11 C 1.53000 * 109.47115 * 275.00138 * 9 8 6 12 12 C 1.50695 * 109.46713 * 155.00194 * 9 8 6 13 13 C 1.39875 * 126.04364 * 40.02475 * 12 9 8 14 14 N 1.30837 * 108.20256 * 179.97438 * 13 12 9 15 15 N 1.40078 * 108.20749 * 0.02562 * 14 13 12 16 16 C 1.46505 * 126.03822 * 180.02562 * 15 14 13 17 17 C 1.34947 * 107.92638 * 359.75365 * 15 14 13 18 18 N 1.31214 * 108.05413 * 359.97438 * 4 3 2 19 19 N 1.34965 * 126.06952 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97624 * 0.02931 * 19 2 1 21 21 C 1.50690 * 109.47472 * 270.02686 * 20 19 2 22 22 H 1.07996 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99716 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00077 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 89.99831 * 25 23 21 27 27 H 1.48500 * 109.46939 * 209.99966 * 25 23 21 28 28 H 1.48493 * 109.46846 * 329.99873 * 25 23 21 29 29 H 1.09005 * 109.47188 * 90.02621 * 1 2 3 30 30 H 1.08997 * 109.47424 * 210.02502 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.02462 * 1 2 3 32 32 H 1.07998 * 126.06683 * 359.93862 * 3 2 1 33 33 H 0.96999 * 120.00586 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00560 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47091 * 60.00254 * 11 9 8 36 36 H 1.08998 * 109.46903 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47214 * 300.00015 * 11 9 8 38 38 H 1.07998 * 125.89796 * 0.02562 * 13 12 9 39 39 H 1.08999 * 109.47098 * 89.97132 * 16 15 14 40 40 H 1.09006 * 109.47252 * 209.97351 * 16 15 14 41 41 H 1.09000 * 109.46750 * 329.96802 * 16 15 14 42 42 H 1.08000 * 126.12770 * 180.23915 * 17 15 14 43 43 H 1.09003 * 109.47262 * 30.03261 * 20 19 2 44 44 H 1.09012 * 109.47086 * 150.02761 * 20 19 2 45 45 H 0.97001 * 119.99936 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6047 0.0001 9 6 5.5811 5.0623 -0.0010 10 1 4.7064 5.3387 0.5878 11 6 5.4052 5.5559 -1.4384 12 6 6.8108 5.6930 0.5999 13 6 8.1316 5.2825 0.3917 14 7 8.9178 6.0717 1.0779 15 7 8.1210 7.0103 1.7459 16 6 8.6018 8.0793 2.6248 17 6 6.8327 6.7597 1.4321 18 7 3.6336 -0.6575 0.0015 19 7 2.3016 -1.0909 0.0005 20 6 1.8500 -2.4845 0.0005 21 6 1.6939 -2.9620 1.4212 22 1 1.9091 -2.2941 2.2421 23 6 1.2753 -4.2514 1.6731 24 7 1.1386 -4.6679 2.9130 25 14 0.9024 -5.4065 0.2532 26 1 2.1353 -6.1446 -0.1213 27 1 -0.1476 -6.3730 0.6641 28 1 0.4230 -4.6202 -0.9117 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1211 -0.0009 33 1 5.6587 1.0779 0.0011 34 1 6.6147 3.2076 0.0009 35 1 4.5157 5.0997 -1.8730 36 1 5.2950 6.6403 -1.4392 37 1 6.2799 5.2796 -2.0271 38 1 8.4479 4.4572 -0.2290 39 1 8.7902 8.9768 2.0357 40 1 7.8479 8.2935 3.3824 41 1 9.5250 7.7628 3.1102 42 1 5.9729 7.3105 1.7841 43 1 0.8918 -2.5560 -0.5142 44 1 2.5852 -3.1047 -0.5126 45 1 0.8445 -5.5751 3.0903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271186946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:50 Heat of formation + Delta-G solvation = 137.321362 kcal Electronic energy + Delta-G solvation = -27308.086467 eV Core-core repulsion = 23364.910325 eV Total energy + Delta-G solvation = -3943.176141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.67236 -40.74555 -39.60582 -36.14243 -34.67921 -33.44754 -33.23025 -31.85773 -31.16349 -30.82664 -29.33405 -27.09760 -26.95561 -26.33234 -23.81792 -22.59841 -21.87519 -21.25968 -20.26423 -19.84205 -19.47193 -17.99780 -17.15309 -17.07676 -16.22564 -15.86953 -15.58981 -15.34851 -14.84630 -14.73775 -14.54574 -14.47046 -13.92731 -13.82487 -13.41930 -13.21053 -13.14397 -12.96236 -12.77804 -12.57959 -12.35280 -12.24161 -12.08206 -11.85390 -11.73695 -11.54067 -11.15246 -10.81129 -10.76376 -10.54819 -10.00781 -9.91138 -9.81904 -9.66881 -9.54052 -9.24404 -8.78336 -8.75970 -7.92183 -7.37988 -6.23852 -4.26690 1.47874 2.09721 2.27654 2.55498 2.65622 3.12338 3.17598 3.23632 3.25224 3.58631 3.85820 4.07964 4.23611 4.32403 4.45445 4.63328 4.68750 4.84489 4.94894 5.04564 5.05361 5.18312 5.33328 5.38551 5.45671 5.64635 5.68595 5.83462 5.93041 6.06168 6.07686 6.22689 6.23161 6.39536 6.43823 6.52970 6.53121 6.58855 6.66567 6.85148 7.12139 7.29135 7.32133 7.52775 7.91937 7.98026 8.34832 8.65081 8.66475 8.82458 9.31531 10.88648 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.002045 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.644737 B =13689.086599 C =14117.497564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.288 3.712 5 N -0.645 5.645 6 C 0.715 3.285 7 O -0.567 6.567 8 N -0.737 5.737 9 C 0.244 3.756 10 H 0.094 0.906 11 C -0.157 4.157 12 C -0.246 4.246 13 C 0.057 3.943 14 N -0.295 5.295 15 N -0.376 5.376 16 C 0.101 3.899 17 C 0.071 3.929 18 N -0.323 5.323 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.540 4.540 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.406 0.594 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.182 0.818 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.177 0.823 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 24.826 -5.661 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.034 3.966 5 N -0.294 5.294 6 C 0.414 3.586 7 O -0.442 6.442 8 N -0.392 5.392 9 C 0.138 3.862 10 H 0.112 0.888 11 C -0.216 4.216 12 C -0.258 4.258 13 C -0.130 4.130 14 N -0.116 5.116 15 N -0.157 5.157 16 C -0.040 4.040 17 C -0.076 4.076 18 N -0.153 5.153 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.578 4.578 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.180 0.820 33 H 0.241 0.759 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.199 0.801 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.194 0.806 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.089 24.375 -5.105 27.683 hybrid contribution -0.407 -0.664 -0.653 1.016 sum 11.682 23.711 -5.758 27.053 Atomic orbital electron populations 1.20394 0.87932 1.04118 1.02387 1.21046 0.94868 0.86976 1.00815 1.21261 0.89666 0.99860 1.20820 1.18654 0.86673 0.89162 1.02114 1.41413 1.07524 1.03808 1.76703 1.15599 0.84796 0.80299 0.77857 1.90861 1.23506 1.73424 1.56398 1.45115 1.07480 1.06104 1.80550 1.18825 0.94234 0.77112 0.96049 0.88762 1.22183 1.02426 1.01127 0.95861 1.20113 0.95296 1.02257 1.08105 1.23683 0.91109 0.99247 0.98930 1.77389 1.18890 1.02929 1.12399 1.48493 1.04342 1.25462 1.37436 1.21889 1.02071 0.87445 0.92635 1.22307 0.88398 0.98681 0.98231 1.77251 0.99407 1.08518 1.30112 1.48473 1.01189 1.06923 1.53541 1.19975 0.95256 0.73860 0.99614 1.21197 1.47184 0.98973 0.90467 0.90105 1.24821 0.94527 0.97473 0.95787 1.69878 1.45783 1.18092 1.18644 0.86885 0.78943 0.81454 0.82703 1.19674 1.20589 1.18845 0.91150 0.89921 0.90395 0.81998 0.75921 0.77123 0.91530 0.91830 0.92539 0.80124 0.90660 0.89291 0.89189 0.80560 0.93255 0.93713 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.00 0.36 -1.16 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.87 9.52 -39.83 -0.38 -6.24 16 4 C 0.29 5.86 8.11 -154.36 -1.25 4.61 16 5 N -0.64 -10.01 5.46 -15.51 -0.08 -10.10 16 6 C 0.72 10.39 8.50 -86.92 -0.74 9.66 16 7 O -0.57 -10.01 13.13 5.29 0.07 -9.94 16 8 N -0.74 -7.41 5.06 -59.81 -0.30 -7.71 16 9 C 0.24 2.21 3.01 -69.08 -0.21 2.00 16 10 H 0.09 0.97 7.57 -51.93 -0.39 0.58 16 11 C -0.16 -1.33 9.47 37.16 0.35 -0.98 16 12 C -0.25 -2.01 5.09 -105.05 -0.53 -2.54 16 13 C 0.06 0.48 11.20 -17.36 -0.19 0.29 16 14 N -0.30 -2.93 12.58 30.63 0.39 -2.54 16 15 N -0.38 -2.90 4.01 -68.16 -0.27 -3.17 16 16 C 0.10 0.38 11.47 59.85 0.69 1.06 16 17 C 0.07 0.51 11.40 -17.22 -0.20 0.31 16 18 N -0.32 -7.40 12.59 31.44 0.40 -7.00 16 19 N -0.32 -7.47 3.59 -58.33 -0.21 -7.68 16 20 C 0.23 5.63 4.88 -5.20 -0.03 5.60 16 21 C -0.54 -15.21 9.94 -34.44 -0.34 -15.55 16 22 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 23 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 24 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 25 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.26 -5.71 6.54 56.52 0.37 -5.35 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.16 3.26 5.91 -52.49 -0.31 2.95 16 33 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 34 H 0.39 2.99 7.65 -40.82 -0.31 2.68 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.18 1.08 7.72 -52.49 -0.41 0.67 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.05 1.11 6.71 -51.93 -0.35 0.76 16 44 H 0.04 1.08 7.57 -51.92 -0.39 0.69 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -36.88 382.69 -7.61 -44.49 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.32 Total: 7.48 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -3.14 Total: 0.53 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.68 Total: -63.90 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.88 -7.61 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271186946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.809 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds