Wall clock time and date at job start Tue Mar 31 2020 17:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35244 * 126.07048 * 2 1 4 4 C 1.40401 * 107.86868 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97600 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99728 * 0.02562 * 5 4 3 7 7 O 1.21589 * 119.99982 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99703 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47092 * 35.00228 * 9 8 6 11 11 C 1.53000 * 109.47115 * 275.00138 * 9 8 6 12 12 C 1.50695 * 109.46713 * 155.00194 * 9 8 6 13 13 C 1.39875 * 126.04364 * 40.02475 * 12 9 8 14 14 N 1.30837 * 108.20256 * 179.97438 * 13 12 9 15 15 N 1.40078 * 108.20749 * 0.02562 * 14 13 12 16 16 C 1.46505 * 126.03822 * 180.02562 * 15 14 13 17 17 C 1.34947 * 107.92638 * 359.75365 * 15 14 13 18 18 N 1.31214 * 108.05413 * 359.97438 * 4 3 2 19 19 N 1.34965 * 126.06952 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97624 * 0.02931 * 19 2 1 21 21 C 1.50690 * 109.47472 * 270.02686 * 20 19 2 22 22 H 1.07996 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99716 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00077 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 89.99831 * 25 23 21 27 27 H 1.48500 * 109.46939 * 209.99966 * 25 23 21 28 28 H 1.48493 * 109.46846 * 329.99873 * 25 23 21 29 29 H 1.09005 * 109.47188 * 90.02621 * 1 2 3 30 30 H 1.08997 * 109.47424 * 210.02502 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.02462 * 1 2 3 32 32 H 1.07998 * 126.06683 * 359.93862 * 3 2 1 33 33 H 0.96999 * 120.00586 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00560 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47091 * 60.00254 * 11 9 8 36 36 H 1.08998 * 109.46903 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47214 * 300.00015 * 11 9 8 38 38 H 1.07998 * 125.89796 * 0.02562 * 13 12 9 39 39 H 1.08999 * 109.47098 * 89.97132 * 16 15 14 40 40 H 1.09006 * 109.47252 * 209.97351 * 16 15 14 41 41 H 1.09000 * 109.46750 * 329.96802 * 16 15 14 42 42 H 1.08000 * 126.12770 * 180.23915 * 17 15 14 43 43 H 1.09003 * 109.47262 * 30.03261 * 20 19 2 44 44 H 1.09012 * 109.47086 * 150.02761 * 20 19 2 45 45 H 0.97001 * 119.99936 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6047 0.0001 9 6 5.5811 5.0623 -0.0010 10 1 4.7064 5.3387 0.5878 11 6 5.4052 5.5559 -1.4384 12 6 6.8108 5.6930 0.5999 13 6 8.1316 5.2825 0.3917 14 7 8.9178 6.0717 1.0779 15 7 8.1210 7.0103 1.7459 16 6 8.6018 8.0793 2.6248 17 6 6.8327 6.7597 1.4321 18 7 3.6336 -0.6575 0.0015 19 7 2.3016 -1.0909 0.0005 20 6 1.8500 -2.4845 0.0005 21 6 1.6939 -2.9620 1.4212 22 1 1.9091 -2.2941 2.2421 23 6 1.2753 -4.2514 1.6731 24 7 1.1386 -4.6679 2.9130 25 14 0.9024 -5.4065 0.2532 26 1 2.1353 -6.1446 -0.1213 27 1 -0.1476 -6.3730 0.6641 28 1 0.4230 -4.6202 -0.9117 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1211 -0.0009 33 1 5.6587 1.0779 0.0011 34 1 6.6147 3.2076 0.0009 35 1 4.5157 5.0997 -1.8730 36 1 5.2950 6.6403 -1.4392 37 1 6.2799 5.2796 -2.0271 38 1 8.4479 4.4572 -0.2290 39 1 8.7902 8.9768 2.0357 40 1 7.8479 8.2935 3.3824 41 1 9.5250 7.7628 3.1102 42 1 5.9729 7.3105 1.7841 43 1 0.8918 -2.5560 -0.5142 44 1 2.5852 -3.1047 -0.5126 45 1 0.8445 -5.5751 3.0903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271186946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:49 Heat of formation + Delta-G solvation = 110.833597 kcal Electronic energy + Delta-G solvation = -27309.235062 eV Core-core repulsion = 23364.910325 eV Total energy + Delta-G solvation = -3944.324737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -42.36963 -42.16659 -40.85800 -37.10738 -36.09078 -35.21737 -33.96356 -33.29586 -32.75024 -31.96031 -30.01169 -28.84854 -27.83529 -27.50373 -24.98085 -24.10193 -22.88865 -22.10564 -21.27682 -21.00972 -20.83018 -19.20847 -19.13290 -18.00585 -17.53738 -16.99985 -16.72109 -16.37158 -16.18997 -16.03082 -15.54781 -15.44740 -15.24576 -14.81777 -14.75163 -14.50318 -14.06439 -13.82039 -13.71408 -13.66614 -13.60291 -13.40166 -13.36825 -13.18311 -12.82842 -12.73670 -12.55393 -12.40120 -12.23379 -11.80926 -11.54799 -11.45313 -11.36726 -11.08203 -10.88143 -10.39691 -10.20629 -9.53529 -9.38585 -8.99808 -8.38583 -6.49473 0.89771 1.02910 1.16260 1.37301 1.39081 1.48913 1.68021 1.71074 1.77652 2.15956 2.28374 2.44722 2.93822 3.19783 3.58112 3.86873 3.99626 4.14259 4.16093 4.30424 4.38880 4.45816 4.48188 4.49564 4.57890 4.72403 4.77831 4.80088 4.80928 4.82718 4.87465 4.99224 5.04976 5.11052 5.18035 5.25222 5.26854 5.38544 5.61307 5.66065 5.90396 5.93781 6.05867 6.10722 6.41288 6.54562 6.71149 6.77348 7.14046 7.15948 7.49338 8.78044 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.002045 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.644737 B =13689.086599 C =14117.497564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.089 3.911 3 C -0.296 4.296 4 C 0.296 3.704 5 N -0.638 5.638 6 C 0.714 3.286 7 O -0.597 6.597 8 N -0.716 5.716 9 C 0.248 3.752 10 H 0.083 0.917 11 C -0.151 4.151 12 C -0.259 4.259 13 C 0.052 3.948 14 N -0.334 5.334 15 N -0.379 5.379 16 C 0.092 3.908 17 C 0.076 3.924 18 N -0.360 5.360 19 N -0.345 5.345 20 C 0.242 3.758 21 C -0.549 4.549 22 H 0.023 0.977 23 C 0.020 3.980 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.233 1.233 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.409 0.591 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.198 0.802 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.206 0.794 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.161 25.987 -7.385 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.327 4.327 4 C 0.040 3.960 5 N -0.290 5.290 6 C 0.413 3.587 7 O -0.475 6.475 8 N -0.372 5.372 9 C 0.143 3.857 10 H 0.101 0.899 11 C -0.209 4.209 12 C -0.271 4.271 13 C -0.133 4.133 14 N -0.155 5.155 15 N -0.160 5.160 16 C -0.048 4.048 17 C -0.072 4.072 18 N -0.190 5.190 19 N -0.127 5.127 20 C 0.122 3.878 21 C -0.587 4.587 22 H 0.041 0.959 23 C -0.180 4.180 24 N -0.576 5.576 25 Si 0.773 3.227 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.156 1.156 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.257 0.743 34 H 0.246 0.754 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.215 0.785 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.223 0.777 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.110 25.598 -6.830 29.130 hybrid contribution -0.299 -0.804 0.015 0.858 sum 11.811 24.794 -6.816 28.297 Atomic orbital electron populations 1.20534 0.85243 1.04367 1.04427 1.21753 0.96696 0.86370 0.99267 1.21438 0.89940 1.00004 1.21330 1.18956 0.88149 0.88878 1.00002 1.41428 1.07023 1.03944 1.76573 1.15747 0.85342 0.79960 0.77603 1.90830 1.25074 1.73793 1.57803 1.45036 1.06997 1.06363 1.78774 1.18830 0.94387 0.76037 0.96446 0.89923 1.22116 1.01684 1.01900 0.95212 1.20019 0.94638 1.03165 1.09322 1.24005 0.91114 0.99466 0.98742 1.77337 1.20264 1.04213 1.13712 1.48819 1.04411 1.25552 1.37256 1.22202 1.02837 0.86835 0.92923 1.22801 0.89060 0.98219 0.97135 1.77162 0.99773 1.09851 1.32256 1.48398 1.01795 1.06993 1.55509 1.19766 0.96385 0.74736 0.96927 1.21264 1.47570 0.98679 0.91231 0.95888 1.25855 0.93783 0.99260 0.99075 1.70040 1.47019 1.18970 1.21602 0.85662 0.78993 0.78754 0.79291 1.19114 1.19963 1.15601 0.88076 0.91411 0.88328 0.81477 0.74264 0.75431 0.93637 0.90342 0.91767 0.78534 0.89347 0.86853 0.89384 0.77734 0.90828 0.93417 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.89 71.23 0.70 -2.13 16 2 C 0.09 3.70 6.92 41.38 0.29 3.99 16 3 C -0.30 -12.16 9.52 22.11 0.21 -11.94 16 4 C 0.30 12.06 8.11 133.31 1.08 13.14 16 5 N -0.64 -19.54 5.46 -321.23 -1.75 -21.29 16 6 C 0.71 20.26 8.50 179.05 1.52 21.78 16 7 O -0.60 -20.89 13.13 -4.00 -0.05 -20.94 16 8 N -0.72 -13.54 5.06 -461.40 -2.34 -15.87 16 9 C 0.25 4.16 3.01 44.24 0.13 4.30 16 10 H 0.08 1.62 7.57 -2.39 -0.02 1.60 16 11 C -0.15 -2.33 9.47 71.98 0.68 -1.65 16 12 C -0.26 -3.81 5.09 -20.14 -0.10 -3.91 16 13 C 0.05 0.82 11.20 85.24 0.95 1.77 16 14 N -0.33 -6.27 12.58 -57.02 -0.72 -6.99 16 15 N -0.38 -5.20 4.01 -369.54 -1.48 -6.68 16 16 C 0.09 0.51 11.47 127.77 1.47 1.97 16 17 C 0.08 0.92 11.40 83.54 0.95 1.88 16 18 N -0.36 -16.72 12.59 -54.43 -0.69 -17.41 16 19 N -0.34 -16.23 3.59 -338.46 -1.22 -17.45 16 20 C 0.24 11.64 4.88 85.63 0.42 12.06 16 21 C -0.55 -31.83 9.94 25.60 0.25 -31.58 16 22 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 23 C 0.02 1.12 5.47 84.66 0.46 1.59 16 24 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 25 Si 0.95 41.12 27.47 68.60 1.88 43.00 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 28 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 29 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.07 2.40 7.71 -2.39 -0.02 2.38 16 31 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.17 6.67 5.91 -2.91 -0.02 6.65 16 33 H 0.42 10.18 8.84 -92.71 -0.82 9.36 16 34 H 0.41 5.55 7.65 -92.71 -0.71 4.84 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.20 2.06 7.72 -2.91 -0.02 2.03 16 39 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.07 3.16 6.71 -2.39 -0.02 3.15 16 44 H 0.05 2.25 7.57 -2.38 -0.02 2.23 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -83.22 382.69 2.42 -80.80 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.55 Total: 28.77 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 9.02 Total: 11.26 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -7.89 Total: -142.89 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Total: -83.22 2.42 -80.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271186946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.632 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds