Wall clock time and date at job start Tue Mar 31 2020 17:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35244 * 126.07279 * 2 1 4 4 C 1.40398 * 107.86837 * 180.15255 * 3 2 1 5 5 N 1.40190 * 125.97225 * 179.82476 * 4 3 2 6 6 C 1.34773 * 120.00354 * 359.71790 * 5 4 3 7 7 O 1.21597 * 120.00027 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00462 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00376 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47473 * 180.02562 * 9 8 6 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.36872 * 126.39846 * 265.02622 * 11 10 9 13 13 C 1.34669 * 106.82011 * 180.02562 * 12 11 10 14 14 N 1.34127 * 108.01600 * 359.97438 * 13 12 11 15 15 C 1.30499 * 109.25921 * 359.73283 * 14 13 12 16 16 C 1.50696 * 125.65123 * 180.28830 * 15 14 13 17 17 N 1.31207 * 108.05731 * 359.56743 * 4 3 2 18 18 N 1.34963 * 126.07082 * 179.67322 * 2 1 3 19 19 C 1.46501 * 125.97392 * 359.97438 * 18 2 1 20 20 C 1.50705 * 109.47337 * 269.99935 * 19 18 2 21 21 H 1.07994 * 119.99649 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00039 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47117 * 59.99408 * 24 22 20 26 26 H 1.48496 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46875 * 300.00050 * 24 22 20 28 28 H 1.08996 * 109.47637 * 270.32810 * 1 2 3 29 29 H 1.09005 * 109.47117 * 30.32817 * 1 2 3 30 30 H 1.08995 * 109.47078 * 150.32180 * 1 2 3 31 31 H 1.08000 * 126.06768 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00335 * 179.71662 * 5 4 3 33 33 H 0.97004 * 120.00228 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47129 * 59.99747 * 9 8 6 35 35 H 1.08998 * 109.46845 * 300.00553 * 9 8 6 36 36 H 1.09002 * 109.47153 * 59.99757 * 10 9 8 37 37 H 1.09001 * 109.46832 * 299.99948 * 10 9 8 38 38 H 1.08005 * 126.59020 * 0.03177 * 12 11 10 39 39 H 1.08001 * 125.99396 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.47677 * 270.17429 * 16 15 14 41 41 H 1.09003 * 109.47218 * 30.17595 * 16 15 14 42 42 H 1.09004 * 109.47110 * 150.17397 * 16 15 14 43 43 H 1.09003 * 109.47460 * 30.00063 * 19 18 2 44 44 H 1.09007 * 109.47109 * 150.00132 * 19 18 2 45 45 H 0.97001 * 119.99556 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7737 1.4750 -0.0082 6 6 4.6370 2.8158 -0.0153 7 8 3.5278 3.3139 -0.0172 8 7 5.7298 3.6046 -0.0192 9 6 5.5812 5.0621 -0.0264 10 6 6.9645 5.7158 -0.0303 11 7 6.8158 7.1733 -0.0381 12 6 6.8281 7.9851 -1.1400 13 6 6.6611 9.2458 -0.6971 14 7 6.5494 9.2048 0.6388 15 6 6.6351 7.9660 1.0401 16 6 6.5504 7.4981 2.4701 17 7 3.6337 -0.6575 0.0038 18 7 2.3016 -1.0909 0.0062 19 6 1.8500 -2.4845 0.0147 20 6 1.6957 -2.9540 1.4384 21 1 1.9119 -2.2813 2.2552 22 6 1.2784 -4.2421 1.6982 23 7 1.0155 -5.0613 0.7035 24 14 1.0864 -4.8238 3.4629 25 1 0.0851 -3.9752 4.1576 26 1 0.6287 -6.2364 3.4714 27 1 2.3923 -4.7217 4.1625 28 1 -0.3634 0.0059 1.0276 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3633 -0.8928 -0.5088 31 1 1.9721 2.1211 -0.0004 32 1 5.6587 1.0778 -0.0063 33 1 6.6148 3.2074 -0.0173 34 1 5.0332 5.3758 0.8621 35 1 5.0331 5.3670 -0.9178 36 1 7.5121 5.4021 -0.9190 37 1 7.5129 5.4109 0.8609 38 1 6.9485 7.6742 -2.1674 39 1 6.6230 10.1341 -1.3102 40 1 7.5481 7.4888 2.9091 41 1 5.9105 8.1747 3.0365 42 1 6.1314 6.4922 2.4991 43 1 0.8912 -2.5589 -0.4984 44 1 2.5845 -3.1076 -0.4957 45 1 0.7216 -5.9675 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272149711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:04 Heat of formation + Delta-G solvation = 114.205664 kcal Electronic energy + Delta-G solvation = -26980.473478 eV Core-core repulsion = 23036.294965 eV Total energy + Delta-G solvation = -3944.178513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48271 -40.84717 -39.74371 -36.40147 -34.84738 -33.90936 -33.32374 -32.10370 -31.47155 -30.85420 -29.14870 -27.20115 -26.62169 -26.35083 -24.20190 -22.99189 -21.77392 -21.67662 -20.39720 -19.87029 -19.61066 -18.01926 -17.36652 -16.71974 -16.55408 -16.18587 -15.90837 -15.44226 -15.13882 -14.82475 -14.50452 -14.47501 -14.19672 -14.06685 -13.81230 -13.36740 -13.31609 -13.02794 -12.71919 -12.57368 -12.49397 -12.41322 -12.31135 -12.08976 -11.70445 -11.41728 -11.14022 -10.83498 -10.51406 -10.32495 -10.28196 -10.12893 -10.04243 -9.74610 -9.61911 -9.46584 -8.70127 -8.65760 -7.96568 -7.46083 -6.27189 -4.34868 1.59847 1.96482 2.54173 2.57640 2.82093 3.01011 3.21713 3.25667 3.29429 3.52605 3.75432 4.00313 4.07352 4.12462 4.18284 4.30241 4.43809 4.55206 4.89015 5.01178 5.06496 5.12904 5.19884 5.24100 5.37651 5.43763 5.54758 5.66386 5.85836 5.89415 5.98889 6.09642 6.14823 6.40593 6.42846 6.46836 6.56902 6.77430 6.90063 7.00860 7.05420 7.45207 7.65097 7.76009 7.81769 7.87235 8.03358 8.44158 8.62905 8.72911 9.31370 10.80005 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.001851 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.510550 B =15124.296456 C =15409.226972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.280 3.720 5 N -0.641 5.641 6 C 0.715 3.285 7 O -0.561 6.561 8 N -0.745 5.745 9 C 0.127 3.873 10 C 0.094 3.906 11 N -0.454 5.454 12 C -0.057 4.057 13 C -0.026 4.026 14 N -0.492 5.492 15 C 0.209 3.791 16 C -0.073 4.073 17 N -0.323 5.323 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 21.326 -2.868 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.027 3.973 5 N -0.291 5.291 6 C 0.414 3.586 7 O -0.436 6.436 8 N -0.403 5.403 9 C 0.002 3.998 10 C -0.030 4.030 11 N -0.138 5.138 12 C -0.189 4.189 13 C -0.174 4.174 14 N -0.211 5.211 15 C -0.053 4.053 16 C -0.131 4.131 17 N -0.153 5.153 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.241 0.759 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.047 20.969 -2.418 24.304 hybrid contribution 0.576 -0.915 0.212 1.102 sum 12.623 20.054 -2.206 23.799 Atomic orbital electron populations 1.20334 0.87870 1.02834 1.03190 1.21065 0.94926 0.87138 1.00823 1.21222 0.89679 0.99824 1.21340 1.18632 0.86445 0.89271 1.02977 1.41319 1.07732 1.03548 1.76508 1.15518 0.84472 0.80476 0.78133 1.90908 1.23392 1.73436 1.55822 1.44742 1.08000 1.05731 1.81829 1.21419 0.95764 0.78526 1.04131 1.21957 0.97955 0.77417 1.05650 1.45206 1.54450 1.06910 1.07280 1.22743 1.12083 0.91458 0.92579 1.22313 1.07136 0.96641 0.91305 1.70274 1.20443 1.18327 1.12055 1.23391 1.04373 0.86030 0.91489 1.20249 1.03758 1.01993 0.87103 1.77247 1.00026 1.08245 1.29793 1.48974 1.00841 1.07782 1.52342 1.19688 0.95973 0.71310 0.98918 1.21277 1.46917 0.97947 0.91334 0.91820 1.24924 0.94673 0.96041 0.98142 1.69908 1.44841 1.06982 1.31224 0.86409 0.78795 0.77667 0.83777 1.19927 1.20954 1.20013 0.90404 0.90812 0.90851 0.82271 0.75862 0.76763 0.90501 0.90521 0.88014 0.88116 0.80736 0.81243 0.90101 0.88932 0.90616 0.92772 0.93024 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.06 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.89 9.52 -39.84 -0.38 -6.27 16 4 C 0.28 5.54 8.11 -154.37 -1.25 4.29 16 5 N -0.64 -9.27 5.45 -15.51 -0.08 -9.35 16 6 C 0.72 9.61 8.53 -86.92 -0.74 8.87 16 7 O -0.56 -9.78 13.47 5.28 0.07 -9.71 16 8 N -0.74 -5.81 5.56 -65.23 -0.36 -6.18 16 9 C 0.13 0.91 6.00 -4.04 -0.02 0.88 16 10 C 0.09 0.41 5.79 -4.04 -0.02 0.38 16 11 N -0.45 -3.28 2.75 -113.91 -0.31 -3.59 16 12 C -0.06 -0.42 11.58 -16.57 -0.19 -0.61 16 13 C -0.03 -0.24 11.87 -17.81 -0.21 -0.45 16 14 N -0.49 -5.54 11.25 -10.82 -0.12 -5.66 16 15 C 0.21 1.88 7.90 -155.42 -1.23 0.65 16 16 C -0.07 -0.44 10.04 36.00 0.36 -0.08 16 17 N -0.32 -7.28 12.59 31.44 0.40 -6.88 16 18 N -0.32 -7.42 3.59 -58.32 -0.21 -7.63 16 19 C 0.26 6.56 5.99 -5.19 -0.03 6.53 16 20 C -0.54 -14.63 9.39 -34.44 -0.32 -14.95 16 21 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.82 13.29 55.43 0.74 -24.09 16 24 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 32 H 0.41 4.48 8.84 -40.82 -0.36 4.12 16 33 H 0.40 1.69 8.49 -40.82 -0.35 1.34 16 34 H 0.08 0.66 7.63 -51.93 -0.40 0.27 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.27 7.94 -51.93 -0.41 -0.14 16 38 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.37 7.34 -51.93 -0.38 -0.01 16 43 H 0.05 1.36 7.04 -51.93 -0.37 0.99 16 44 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -36.06 385.50 -9.74 -45.80 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.29 Total: 4.37 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -4.35 Total: 1.21 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.04 Total: -63.37 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.06 -9.74 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272149711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.007 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds