Wall clock time and date at job start Tue Mar 31 2020 17:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35244 * 126.07279 * 2 1 4 4 C 1.40398 * 107.86837 * 180.15255 * 3 2 1 5 5 N 1.40190 * 125.97225 * 179.82476 * 4 3 2 6 6 C 1.34773 * 120.00354 * 359.71790 * 5 4 3 7 7 O 1.21597 * 120.00027 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00462 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00376 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47473 * 180.02562 * 9 8 6 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.36872 * 126.39846 * 265.02622 * 11 10 9 13 13 C 1.34669 * 106.82011 * 180.02562 * 12 11 10 14 14 N 1.34127 * 108.01600 * 359.97438 * 13 12 11 15 15 C 1.30499 * 109.25921 * 359.73283 * 14 13 12 16 16 C 1.50696 * 125.65123 * 180.28830 * 15 14 13 17 17 N 1.31207 * 108.05731 * 359.56743 * 4 3 2 18 18 N 1.34963 * 126.07082 * 179.67322 * 2 1 3 19 19 C 1.46501 * 125.97392 * 359.97438 * 18 2 1 20 20 C 1.50705 * 109.47337 * 269.99935 * 19 18 2 21 21 H 1.07994 * 119.99649 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00039 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47117 * 59.99408 * 24 22 20 26 26 H 1.48496 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46875 * 300.00050 * 24 22 20 28 28 H 1.08996 * 109.47637 * 270.32810 * 1 2 3 29 29 H 1.09005 * 109.47117 * 30.32817 * 1 2 3 30 30 H 1.08995 * 109.47078 * 150.32180 * 1 2 3 31 31 H 1.08000 * 126.06768 * 359.97438 * 3 2 1 32 32 H 0.97004 * 120.00335 * 179.71662 * 5 4 3 33 33 H 0.97004 * 120.00228 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47129 * 59.99747 * 9 8 6 35 35 H 1.08998 * 109.46845 * 300.00553 * 9 8 6 36 36 H 1.09002 * 109.47153 * 59.99757 * 10 9 8 37 37 H 1.09001 * 109.46832 * 299.99948 * 10 9 8 38 38 H 1.08005 * 126.59020 * 0.03177 * 12 11 10 39 39 H 1.08001 * 125.99396 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.47677 * 270.17429 * 16 15 14 41 41 H 1.09003 * 109.47218 * 30.17595 * 16 15 14 42 42 H 1.09004 * 109.47110 * 150.17397 * 16 15 14 43 43 H 1.09003 * 109.47460 * 30.00063 * 19 18 2 44 44 H 1.09007 * 109.47109 * 150.00132 * 19 18 2 45 45 H 0.97001 * 119.99556 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7737 1.4750 -0.0082 6 6 4.6370 2.8158 -0.0153 7 8 3.5278 3.3139 -0.0172 8 7 5.7298 3.6046 -0.0192 9 6 5.5812 5.0621 -0.0264 10 6 6.9645 5.7158 -0.0303 11 7 6.8158 7.1733 -0.0381 12 6 6.8281 7.9851 -1.1400 13 6 6.6611 9.2458 -0.6971 14 7 6.5494 9.2048 0.6388 15 6 6.6351 7.9660 1.0401 16 6 6.5504 7.4981 2.4701 17 7 3.6337 -0.6575 0.0038 18 7 2.3016 -1.0909 0.0062 19 6 1.8500 -2.4845 0.0147 20 6 1.6957 -2.9540 1.4384 21 1 1.9119 -2.2813 2.2552 22 6 1.2784 -4.2421 1.6982 23 7 1.0155 -5.0613 0.7035 24 14 1.0864 -4.8238 3.4629 25 1 0.0851 -3.9752 4.1576 26 1 0.6287 -6.2364 3.4714 27 1 2.3923 -4.7217 4.1625 28 1 -0.3634 0.0059 1.0276 29 1 -0.3634 0.8871 -0.5189 30 1 -0.3633 -0.8928 -0.5088 31 1 1.9721 2.1211 -0.0004 32 1 5.6587 1.0778 -0.0063 33 1 6.6148 3.2074 -0.0173 34 1 5.0332 5.3758 0.8621 35 1 5.0331 5.3670 -0.9178 36 1 7.5121 5.4021 -0.9190 37 1 7.5129 5.4109 0.8609 38 1 6.9485 7.6742 -2.1674 39 1 6.6230 10.1341 -1.3102 40 1 7.5481 7.4888 2.9091 41 1 5.9105 8.1747 3.0365 42 1 6.1314 6.4922 2.4991 43 1 0.8912 -2.5589 -0.4984 44 1 2.5845 -3.1076 -0.4957 45 1 0.7216 -5.9675 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272149711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:03 Heat of formation + Delta-G solvation = 90.046418 kcal Electronic energy + Delta-G solvation = -26981.521101 eV Core-core repulsion = 23036.294965 eV Total energy + Delta-G solvation = -3945.226137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.05461 -42.31570 -40.97417 -37.18953 -36.23084 -35.32898 -34.55995 -32.97563 -32.62241 -32.58436 -29.91754 -28.45135 -27.87147 -27.69758 -25.27819 -24.46302 -22.83426 -22.33315 -21.48829 -21.18281 -20.60827 -19.17505 -18.76437 -18.03916 -17.66490 -17.24649 -17.04452 -16.57308 -16.28347 -16.10352 -15.73257 -15.58330 -15.37379 -14.94687 -14.69229 -14.45704 -14.27387 -13.89273 -13.80668 -13.78297 -13.70339 -13.52442 -13.20369 -13.14423 -13.05888 -12.86472 -12.71174 -12.65002 -12.23570 -12.11311 -11.60222 -11.36889 -11.21488 -10.94894 -10.72287 -10.66191 -10.34149 -9.56618 -9.28090 -9.08530 -8.31489 -6.49156 0.89086 1.03096 1.14938 1.39244 1.40396 1.49355 1.64451 1.75714 2.17305 2.18576 2.35806 2.37380 2.98093 3.13451 3.58511 3.62984 3.68014 3.85798 3.95974 4.17566 4.22907 4.37379 4.44291 4.50009 4.66991 4.68731 4.72081 4.72490 4.79712 4.89153 4.90337 4.97219 5.01244 5.07794 5.11468 5.19926 5.33493 5.34070 5.54680 5.82021 5.83806 5.84731 5.96896 6.24827 6.27158 6.61905 6.72416 7.12080 7.15961 7.21615 7.38025 8.73971 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.001851 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.510550 B =15124.296456 C =15409.226972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.632 5.632 6 C 0.713 3.287 7 O -0.601 6.601 8 N -0.715 5.715 9 C 0.131 3.869 10 C 0.100 3.900 11 N -0.454 5.454 12 C -0.049 4.049 13 C -0.058 4.058 14 N -0.537 5.537 15 C 0.194 3.806 16 C -0.071 4.071 17 N -0.358 5.358 18 N -0.343 5.343 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.424 0.576 33 H 0.421 0.579 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.205 0.795 39 H 0.180 0.820 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.025 0.975 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 21.702 -2.401 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.284 5.284 6 C 0.413 3.587 7 O -0.479 6.479 8 N -0.373 5.373 9 C 0.006 3.994 10 C -0.022 4.022 11 N -0.137 5.137 12 C -0.181 4.181 13 C -0.205 4.205 14 N -0.257 5.257 15 C -0.068 4.068 16 C -0.129 4.129 17 N -0.188 5.188 18 N -0.125 5.125 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.262 0.738 33 H 0.259 0.741 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.222 0.778 39 H 0.197 0.803 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.282 21.370 -1.961 25.238 hybrid contribution 0.274 -0.890 0.006 0.931 sum 13.556 20.480 -1.955 24.638 Atomic orbital electron populations 1.20462 0.85510 1.04148 1.03905 1.21721 0.96602 0.86521 0.99523 1.21388 0.90098 0.99781 1.21694 1.18913 0.88025 0.88890 1.00456 1.41287 1.07128 1.03641 1.76359 1.15709 0.85141 0.80149 0.77748 1.90879 1.25491 1.73958 1.57545 1.44445 1.07595 1.05631 1.79670 1.21414 0.97536 0.77678 1.02806 1.22096 0.96284 0.75510 1.08342 1.45347 1.53767 1.07869 1.06742 1.23218 1.10209 0.90916 0.93776 1.22685 1.08501 0.98204 0.91073 1.70216 1.22022 1.20099 1.13392 1.23854 1.04165 0.85949 0.92856 1.20331 1.04628 1.02308 0.85652 1.77168 0.99986 1.09705 1.31970 1.48754 1.01693 1.07445 1.54648 1.19244 0.94936 0.72446 0.97756 1.21406 1.47570 0.98325 0.91785 0.93199 1.25723 0.93990 0.95917 1.02206 1.69994 1.45045 1.07376 1.33161 0.85423 0.78746 0.77636 0.78792 1.19103 1.19836 1.20005 0.89876 0.87697 0.91270 0.81782 0.73841 0.74122 0.91911 0.91982 0.85192 0.85692 0.77790 0.80275 0.88590 0.89639 0.89387 0.93063 0.95676 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 10.11 71.24 0.72 -2.02 16 2 C 0.09 3.62 6.92 41.39 0.29 3.91 16 3 C -0.30 -12.05 9.52 22.10 0.21 -11.84 16 4 C 0.29 11.43 8.11 133.31 1.08 12.51 16 5 N -0.63 -17.26 5.45 -321.24 -1.75 -19.01 16 6 C 0.71 17.84 8.53 179.06 1.53 19.36 16 7 O -0.60 -20.33 13.47 -4.02 -0.05 -20.39 16 8 N -0.71 -9.01 5.56 -478.53 -2.66 -11.67 16 9 C 0.13 1.53 6.00 86.38 0.52 2.05 16 10 C 0.10 0.50 5.79 86.38 0.50 1.00 16 11 N -0.45 -5.52 2.75 -514.29 -1.41 -6.93 16 12 C -0.05 -0.62 11.58 83.09 0.96 0.34 16 13 C -0.06 -1.04 11.87 83.52 0.99 -0.05 16 14 N -0.54 -12.09 11.25 -188.14 -2.12 -14.20 16 15 C 0.19 3.29 7.90 138.13 1.09 4.38 16 16 C -0.07 -0.76 10.04 71.23 0.72 -0.05 16 17 N -0.36 -16.30 12.59 -54.44 -0.69 -16.99 16 18 N -0.34 -16.36 3.59 -338.43 -1.22 -17.58 16 19 C 0.28 14.39 5.99 85.63 0.51 14.90 16 20 C -0.55 -30.64 9.39 25.60 0.24 -30.40 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.23 5.46 84.66 0.46 1.69 16 23 N -0.92 -51.36 13.29 21.45 0.28 -51.07 16 24 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.07 2.35 7.07 -2.39 -0.02 2.33 16 31 H 0.16 6.49 5.91 -2.91 -0.02 6.47 16 32 H 0.42 8.42 8.84 -92.71 -0.82 7.60 16 33 H 0.42 1.84 8.49 -92.71 -0.79 1.05 16 34 H 0.06 0.97 7.63 -2.39 -0.02 0.95 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.13 0.10 7.94 -2.39 -0.02 0.08 16 38 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 0.69 7.34 -2.38 -0.02 0.67 16 43 H 0.05 2.66 7.04 -2.39 -0.02 2.64 16 44 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -80.51 385.50 1.66 -78.85 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.57 Total: 18.62 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 9.82 Total: 15.79 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -9.56 Total: -137.45 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.51 1.66 -78.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272149711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.892 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds