Wall clock time and date at job start Tue Mar 31 2020 17:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06567 * 2 1 4 4 C 1.40411 * 107.86452 * 180.15800 * 3 2 1 5 5 N 1.40160 * 125.97493 * 179.83247 * 4 3 2 6 6 C 1.34769 * 119.99842 * 359.71051 * 5 4 3 7 7 O 1.21296 * 120.00473 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00079 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.47303 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47136 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46825 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46992 * 180.02562 * 11 10 9 13 13 C 1.35350 * 126.75528 * 124.97792 * 12 11 10 14 14 N 1.35307 * 106.17738 * 180.02562 * 13 12 11 15 15 H 0.97006 * 125.86934 * 180.02562 * 14 13 12 16 16 N 1.28719 * 108.26459 * 0.02562 * 14 13 12 17 17 N 1.28634 * 110.17554 * 359.97438 * 16 14 13 18 18 N 1.31221 * 108.05154 * 359.56433 * 4 3 2 19 19 N 1.34964 * 126.07207 * 179.67779 * 2 1 3 20 20 C 1.46502 * 125.97085 * 359.97022 * 19 2 1 21 21 C 1.50701 * 109.46944 * 270.00751 * 20 19 2 22 22 H 1.08003 * 119.99953 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00075 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99729 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47594 * 60.00352 * 25 23 21 27 27 H 1.48503 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47337 * 300.00241 * 25 23 21 29 29 H 1.09000 * 109.47501 * 270.32296 * 1 2 3 30 30 H 1.09006 * 109.46867 * 30.31793 * 1 2 3 31 31 H 1.08994 * 109.47329 * 150.31639 * 1 2 3 32 32 H 1.08000 * 126.07045 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00065 * 179.71776 * 5 4 3 34 34 H 1.08996 * 109.46919 * 60.00422 * 8 6 5 35 35 H 1.09004 * 109.47038 * 299.99892 * 8 6 5 36 36 H 1.08996 * 109.46911 * 60.00267 * 9 8 6 37 37 H 1.09003 * 109.47308 * 300.00144 * 9 8 6 38 38 H 1.08996 * 109.46931 * 60.00367 * 10 9 8 39 39 H 1.09003 * 109.47211 * 300.00290 * 10 9 8 40 40 H 1.08996 * 109.47150 * 60.00398 * 11 10 9 41 41 H 1.09004 * 109.46934 * 299.99790 * 11 10 9 42 42 H 1.08003 * 126.90812 * 0.08839 * 13 12 11 43 43 H 1.08998 * 109.47310 * 30.01381 * 20 19 2 44 44 H 1.09005 * 109.46745 * 150.01792 * 20 19 2 45 45 H 0.97002 * 120.00195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 -0.0037 5 7 4.7735 1.4750 -0.0082 6 6 4.6366 2.8157 -0.0152 7 8 3.5301 3.3125 -0.0172 8 6 5.8585 3.6978 -0.0207 9 6 5.4277 5.1659 -0.0275 10 6 6.6682 6.0615 -0.0324 11 6 6.2374 7.5295 -0.0386 12 6 7.4592 8.4116 -0.0441 13 6 7.7510 9.3857 -0.9374 14 7 8.9384 9.9075 -0.5518 15 1 9.4133 10.6280 -0.9949 16 7 9.3294 9.2835 0.5039 17 7 8.4693 8.3853 0.8326 18 7 3.6336 -0.6575 0.0037 19 7 2.3016 -1.0909 0.0061 20 6 1.8500 -2.4845 0.0146 21 6 1.6955 -2.9538 1.4383 22 1 1.9118 -2.2811 2.2551 23 6 1.2772 -4.2416 1.6981 24 7 1.0134 -5.0606 0.7035 25 14 1.0851 -4.8231 3.4628 26 1 0.0845 -3.9739 4.1578 27 1 0.6274 -6.2358 3.4715 28 1 2.3911 -4.7222 4.1623 29 1 -0.3634 0.0058 1.0276 30 1 -0.3633 0.8872 -0.5188 31 1 -0.3633 -0.8927 -0.5089 32 1 1.9719 2.1212 0.0004 33 1 5.6584 1.0778 -0.0064 34 1 6.4532 3.4892 -0.9099 35 1 6.4544 3.4986 0.8701 36 1 4.8332 5.3742 0.8620 37 1 4.8315 5.3655 -0.9180 38 1 7.2631 5.8533 -0.9217 39 1 7.2641 5.8618 0.8583 40 1 5.6427 7.7374 0.8509 41 1 5.6414 7.7295 -0.9291 42 1 7.1553 9.6866 -1.7866 43 1 0.8912 -2.5589 -0.4986 44 1 2.5846 -3.1076 -0.4956 45 1 0.7194 -5.9667 0.8862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274341803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:44 Heat of formation + Delta-G solvation = 114.524521 kcal Electronic energy + Delta-G solvation = -26321.281366 eV Core-core repulsion = 22377.116680 eV Total energy + Delta-G solvation = -3944.164686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.70872 -40.70052 -39.33968 -36.24839 -34.78254 -33.78608 -33.35616 -32.49807 -31.42701 -30.84614 -29.57507 -26.77504 -26.33287 -25.38813 -23.75482 -23.06045 -22.10592 -21.37157 -20.76446 -19.73661 -19.13098 -18.70317 -16.73926 -16.62231 -16.43939 -16.14837 -16.13286 -15.41317 -15.28893 -14.87884 -14.46401 -14.34088 -14.14276 -13.95090 -13.17269 -13.02430 -12.90283 -12.46444 -12.30681 -12.25112 -12.12502 -11.82435 -11.72928 -11.63368 -11.38590 -11.38374 -11.19022 -11.07381 -10.89375 -10.79992 -10.72044 -10.43030 -10.22022 -9.89440 -9.62776 -9.52044 -9.48775 -8.62817 -7.91098 -7.42786 -6.24319 -4.31952 1.12326 2.08952 2.31026 2.38745 2.83883 2.95230 3.24466 3.28175 3.32788 3.75707 3.88356 3.98853 4.27286 4.32083 4.52523 4.63633 4.71563 4.82839 4.91642 5.08024 5.09465 5.15710 5.30047 5.40154 5.49721 5.55464 5.63473 5.70597 5.73659 5.84271 5.94824 6.06547 6.12355 6.18947 6.29104 6.34643 6.46584 6.58272 6.75564 6.94864 7.06687 7.49697 7.67627 7.69994 7.90208 8.02043 8.07295 8.32794 8.67784 8.76493 9.34292 10.82900 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.001575 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.249354 B =17777.420403 C =18159.071919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.090 3.910 3 C -0.291 4.291 4 C 0.263 3.737 5 N -0.634 5.634 6 C 0.516 3.484 7 O -0.519 6.519 8 C -0.135 4.135 9 C -0.104 4.104 10 C -0.114 4.114 11 C -0.035 4.035 12 C -0.014 4.014 13 C -0.046 4.046 14 N -0.394 5.394 15 H 0.448 0.552 16 N -0.083 5.083 17 N -0.259 5.259 18 N -0.322 5.322 19 N -0.317 5.317 20 C 0.259 3.741 21 C -0.536 4.536 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.892 5.892 25 Si 0.907 3.093 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.410 0.590 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.194 0.806 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 27.753 -6.734 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.322 4.322 4 C 0.010 3.990 5 N -0.281 5.281 6 C 0.303 3.697 7 O -0.392 6.392 8 C -0.176 4.176 9 C -0.142 4.142 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.152 4.152 13 C -0.198 4.198 14 N -0.115 5.115 15 H 0.293 0.707 16 N -0.064 5.064 17 N -0.128 5.128 18 N -0.153 5.153 19 N -0.099 5.099 20 C 0.141 3.859 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.137 4.137 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.211 0.789 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.068 26.532 -5.645 29.689 hybrid contribution -0.467 0.553 -0.240 0.762 sum 11.602 27.085 -5.885 30.047 Atomic orbital electron populations 1.20329 0.87919 1.02791 1.03155 1.21072 0.94897 0.87219 1.00936 1.21245 0.89754 0.99750 1.21409 1.19044 0.87402 0.89603 1.02945 1.42595 1.07444 1.05336 1.72757 1.20768 0.91692 0.81366 0.75902 1.90640 1.27066 1.73842 1.47699 1.21652 0.95847 0.95267 1.04801 1.21352 0.97304 0.91507 1.04016 1.21542 0.97834 0.92813 1.02980 1.19944 0.91121 0.92605 1.03705 1.22198 0.99001 0.99698 0.94332 1.23569 0.91026 1.00527 1.04717 1.45114 1.16654 1.28573 1.21114 0.70654 1.78326 1.21542 1.05411 1.01084 1.75091 1.00792 1.13842 1.23052 1.77255 0.99905 1.08622 1.29501 1.48979 1.01005 1.07769 1.52194 1.19678 0.95949 0.71361 0.98902 1.21286 1.46858 0.97997 0.91355 0.91817 1.24918 0.94652 0.96023 0.98137 1.69909 1.44876 1.06983 1.31229 0.86411 0.78812 0.77646 0.83789 1.19931 1.20952 1.19997 0.90440 0.90840 0.90885 0.82344 0.75493 0.88670 0.88486 0.90724 0.90896 0.91909 0.90868 0.89719 0.89856 0.78923 0.92816 0.93037 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -6.01 9.52 -39.83 -0.38 -6.39 16 4 C 0.26 5.37 8.11 -154.38 -1.25 4.12 16 5 N -0.63 -9.67 5.45 -11.13 -0.06 -9.73 16 6 C 0.52 7.05 7.80 -10.99 -0.09 6.97 16 7 O -0.52 -8.78 13.11 5.54 0.07 -8.71 16 8 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 9 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 10 C -0.11 -0.77 5.19 -26.73 -0.14 -0.90 16 11 C -0.03 -0.21 5.79 -27.88 -0.16 -0.37 16 12 C -0.01 -0.11 6.50 -82.78 -0.54 -0.65 16 13 C -0.05 -0.21 12.04 -17.05 -0.21 -0.41 16 14 N -0.39 -1.86 6.98 30.52 0.21 -1.64 16 15 H 0.45 0.22 8.96 -190.39 -1.71 -1.49 16 16 N -0.08 -0.76 13.38 60.35 0.81 0.05 16 17 N -0.26 -2.70 12.40 33.29 0.41 -2.29 16 18 N -0.32 -7.51 12.59 31.44 0.40 -7.12 16 19 N -0.32 -7.60 3.59 -58.32 -0.21 -7.81 16 20 C 0.26 6.69 5.99 -5.19 -0.03 6.66 16 21 C -0.54 -14.89 9.39 -34.44 -0.32 -15.21 16 22 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 25 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 32 H 0.16 3.17 5.92 -52.49 -0.31 2.86 16 33 H 0.41 4.99 8.82 -40.82 -0.36 4.63 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.19 0.10 8.06 -52.48 -0.42 -0.33 16 43 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 44 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -36.55 386.12 -8.25 -44.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.72 Total: 1.29 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.70 Total: -6.48 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 2.30 Total: -52.93 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.55 -8.25 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274341803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.325 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds