Wall clock time and date at job start Tue Mar 31 2020 17:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06567 * 2 1 4 4 C 1.40411 * 107.86452 * 180.15800 * 3 2 1 5 5 N 1.40160 * 125.97493 * 179.83247 * 4 3 2 6 6 C 1.34769 * 119.99842 * 359.71051 * 5 4 3 7 7 O 1.21296 * 120.00473 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00079 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.47303 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47136 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46825 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46992 * 180.02562 * 11 10 9 13 13 C 1.35350 * 126.75528 * 124.97792 * 12 11 10 14 14 N 1.35307 * 106.17738 * 180.02562 * 13 12 11 15 15 H 0.97006 * 125.86934 * 180.02562 * 14 13 12 16 16 N 1.28719 * 108.26459 * 0.02562 * 14 13 12 17 17 N 1.28634 * 110.17554 * 359.97438 * 16 14 13 18 18 N 1.31221 * 108.05154 * 359.56433 * 4 3 2 19 19 N 1.34964 * 126.07207 * 179.67779 * 2 1 3 20 20 C 1.46502 * 125.97085 * 359.97022 * 19 2 1 21 21 C 1.50701 * 109.46944 * 270.00751 * 20 19 2 22 22 H 1.08003 * 119.99953 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00075 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99729 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47594 * 60.00352 * 25 23 21 27 27 H 1.48503 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47337 * 300.00241 * 25 23 21 29 29 H 1.09000 * 109.47501 * 270.32296 * 1 2 3 30 30 H 1.09006 * 109.46867 * 30.31793 * 1 2 3 31 31 H 1.08994 * 109.47329 * 150.31639 * 1 2 3 32 32 H 1.08000 * 126.07045 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00065 * 179.71776 * 5 4 3 34 34 H 1.08996 * 109.46919 * 60.00422 * 8 6 5 35 35 H 1.09004 * 109.47038 * 299.99892 * 8 6 5 36 36 H 1.08996 * 109.46911 * 60.00267 * 9 8 6 37 37 H 1.09003 * 109.47308 * 300.00144 * 9 8 6 38 38 H 1.08996 * 109.46931 * 60.00367 * 10 9 8 39 39 H 1.09003 * 109.47211 * 300.00290 * 10 9 8 40 40 H 1.08996 * 109.47150 * 60.00398 * 11 10 9 41 41 H 1.09004 * 109.46934 * 299.99790 * 11 10 9 42 42 H 1.08003 * 126.90812 * 0.08839 * 13 12 11 43 43 H 1.08998 * 109.47310 * 30.01381 * 20 19 2 44 44 H 1.09005 * 109.46745 * 150.01792 * 20 19 2 45 45 H 0.97002 * 120.00195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 -0.0037 5 7 4.7735 1.4750 -0.0082 6 6 4.6366 2.8157 -0.0152 7 8 3.5301 3.3125 -0.0172 8 6 5.8585 3.6978 -0.0207 9 6 5.4277 5.1659 -0.0275 10 6 6.6682 6.0615 -0.0324 11 6 6.2374 7.5295 -0.0386 12 6 7.4592 8.4116 -0.0441 13 6 7.7510 9.3857 -0.9374 14 7 8.9384 9.9075 -0.5518 15 1 9.4133 10.6280 -0.9949 16 7 9.3294 9.2835 0.5039 17 7 8.4693 8.3853 0.8326 18 7 3.6336 -0.6575 0.0037 19 7 2.3016 -1.0909 0.0061 20 6 1.8500 -2.4845 0.0146 21 6 1.6955 -2.9538 1.4383 22 1 1.9118 -2.2811 2.2551 23 6 1.2772 -4.2416 1.6981 24 7 1.0134 -5.0606 0.7035 25 14 1.0851 -4.8231 3.4628 26 1 0.0845 -3.9739 4.1578 27 1 0.6274 -6.2358 3.4715 28 1 2.3911 -4.7222 4.1623 29 1 -0.3634 0.0058 1.0276 30 1 -0.3633 0.8872 -0.5188 31 1 -0.3633 -0.8927 -0.5089 32 1 1.9719 2.1212 0.0004 33 1 5.6584 1.0778 -0.0064 34 1 6.4532 3.4892 -0.9099 35 1 6.4544 3.4986 0.8701 36 1 4.8332 5.3742 0.8620 37 1 4.8315 5.3655 -0.9180 38 1 7.2631 5.8533 -0.9217 39 1 7.2641 5.8618 0.8583 40 1 5.6427 7.7374 0.8509 41 1 5.6414 7.7295 -0.9291 42 1 7.1553 9.6866 -1.7866 43 1 0.8912 -2.5589 -0.4986 44 1 2.5846 -3.1076 -0.4956 45 1 0.7194 -5.9667 0.8862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274341803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:43 Heat of formation + Delta-G solvation = 89.194651 kcal Electronic energy + Delta-G solvation = -26322.379752 eV Core-core repulsion = 22377.116680 eV Total energy + Delta-G solvation = -3945.263072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.17179 -42.26714 -40.60694 -36.88420 -36.22039 -35.27250 -34.33567 -33.24183 -32.84605 -32.57562 -30.27090 -28.56213 -27.86634 -26.27827 -24.85035 -24.22940 -23.05390 -21.99106 -21.66089 -21.20914 -20.57965 -19.14257 -18.79715 -17.77283 -17.60183 -17.07957 -17.04489 -16.91160 -16.26354 -16.04473 -15.75581 -15.39538 -15.14936 -14.97766 -14.64994 -14.32772 -13.92567 -13.79352 -13.65532 -13.53261 -13.43569 -13.12497 -12.84628 -12.79499 -12.65927 -12.40716 -12.29725 -12.22668 -12.08376 -11.96766 -11.72428 -11.52212 -11.42875 -11.33250 -11.24944 -10.79153 -10.72248 -10.06530 -9.56469 -9.11230 -8.32440 -6.50355 0.72009 0.95700 1.36804 1.39591 1.41504 1.48817 1.50713 1.57269 2.06327 2.25971 2.31101 2.45538 2.97148 3.53056 3.64619 3.83365 3.93044 4.13219 4.18733 4.20463 4.33343 4.46028 4.46889 4.55200 4.63586 4.71852 4.76553 4.79743 4.88690 4.90660 4.97524 5.01893 5.02462 5.09893 5.16169 5.20756 5.27702 5.35558 5.49938 5.53695 5.61307 5.81283 5.98695 6.11827 6.27212 6.34321 6.62051 7.04006 7.20447 7.20778 7.52773 8.73202 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.001575 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.249354 B =17777.420403 C =18159.071919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 C -0.300 4.300 4 C 0.271 3.729 5 N -0.629 5.629 6 C 0.515 3.485 7 O -0.550 6.550 8 C -0.125 4.125 9 C -0.098 4.098 10 C -0.104 4.104 11 C -0.033 4.033 12 C -0.040 4.040 13 C -0.021 4.021 14 N -0.378 5.378 15 H 0.465 0.535 16 N -0.124 5.124 17 N -0.303 5.303 18 N -0.362 5.362 19 N -0.344 5.344 20 C 0.275 3.725 21 C -0.555 4.555 22 H 0.049 0.951 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.265 1.265 27 H -0.272 1.272 28 H -0.276 1.276 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.425 0.575 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.238 0.762 43 H 0.052 0.948 44 H 0.024 0.976 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 29.635 -7.229 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.330 4.330 4 C 0.017 3.983 5 N -0.279 5.279 6 C 0.305 3.695 7 O -0.426 6.426 8 C -0.164 4.164 9 C -0.136 4.136 10 C -0.142 4.142 11 C -0.072 4.072 12 C -0.179 4.179 13 C -0.175 4.175 14 N -0.101 5.101 15 H 0.314 0.686 16 N -0.104 5.104 17 N -0.170 5.170 18 N -0.193 5.193 19 N -0.126 5.126 20 C 0.156 3.844 21 C -0.593 4.593 22 H 0.067 0.933 23 C -0.177 4.177 24 N -0.555 5.555 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.197 1.197 28 H -0.202 1.202 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.262 0.738 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.264 28.457 -6.144 31.590 hybrid contribution -0.486 0.126 -0.180 0.533 sum 11.778 28.583 -6.323 31.554 Atomic orbital electron populations 1.20465 0.85391 1.04209 1.03898 1.21768 0.96660 0.86551 0.99532 1.21450 0.89987 0.99873 1.21719 1.19447 0.89168 0.89236 1.00441 1.42847 1.06745 1.05552 1.72724 1.21806 0.92911 0.80771 0.74051 1.90615 1.28917 1.74158 1.48928 1.21751 0.93571 0.94050 1.07078 1.21298 0.97685 0.91365 1.03258 1.21418 0.96890 0.93166 1.02690 1.19966 0.90876 0.91826 1.04503 1.22551 0.99114 1.01254 0.94972 1.24211 0.90319 0.98483 1.04448 1.45173 1.16723 1.28205 1.19949 0.68565 1.78246 1.22372 1.06598 1.03140 1.75027 1.02131 1.15050 1.24835 1.77174 1.00024 1.10225 1.31833 1.48771 1.01824 1.07492 1.54515 1.19233 0.94893 0.72482 0.97745 1.21412 1.47695 0.98445 0.91773 0.93309 1.25716 0.93891 0.95839 1.02257 1.69992 1.44964 1.07395 1.33185 0.85420 0.78713 0.77720 0.78718 1.19024 1.19652 1.20159 0.89913 0.87498 0.91318 0.81495 0.73769 0.85773 0.86560 0.92204 0.91015 0.91054 0.92241 0.90571 0.87431 0.74543 0.93014 0.95820 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 10.11 71.23 0.72 -2.04 16 2 C 0.09 3.65 6.92 41.39 0.29 3.93 16 3 C -0.30 -12.34 9.52 22.11 0.21 -12.13 16 4 C 0.27 11.09 8.11 133.32 1.08 12.17 16 5 N -0.63 -18.56 5.45 -307.51 -1.68 -20.24 16 6 C 0.52 13.30 7.80 87.66 0.68 13.99 16 7 O -0.55 -18.08 13.11 -3.08 -0.04 -18.12 16 8 C -0.12 -1.81 5.70 29.85 0.17 -1.64 16 9 C -0.10 -1.39 4.50 30.60 0.14 -1.25 16 10 C -0.10 -1.21 5.19 30.60 0.16 -1.05 16 11 C -0.03 -0.33 5.79 29.85 0.17 -0.16 16 12 C -0.04 -0.53 6.50 41.60 0.27 -0.26 16 13 C -0.02 -0.13 12.04 83.49 1.01 0.88 16 14 N -0.38 -2.84 6.98 -57.36 -0.40 -3.24 16 15 H 0.47 -0.56 8.96 -219.95 -1.97 -2.53 16 16 N -0.12 -2.21 13.38 37.02 0.50 -1.71 16 17 N -0.30 -6.23 12.40 -48.60 -0.60 -6.83 16 18 N -0.36 -17.25 12.59 -54.45 -0.69 -17.94 16 19 N -0.34 -16.90 3.59 -338.44 -1.22 -18.12 16 20 C 0.28 14.76 5.99 85.63 0.51 15.27 16 21 C -0.56 -31.50 9.39 25.60 0.24 -31.26 16 22 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 23 C 0.02 1.33 5.46 84.65 0.46 1.79 16 24 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 25 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.07 2.37 7.07 -2.39 -0.02 2.35 16 32 H 0.17 6.58 5.92 -2.91 -0.02 6.56 16 33 H 0.42 9.79 8.82 -92.71 -0.82 8.98 16 34 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.03 8.10 -2.39 -0.02 1.02 16 37 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 0.54 8.12 -2.39 -0.02 0.52 16 42 H 0.24 -0.94 8.06 -2.91 -0.02 -0.96 16 43 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 44 H 0.02 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -82.06 386.12 2.55 -79.51 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -1.75 Total: 14.83 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.11 Total: -1.75 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -3.80 Total: -119.87 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.04 Total: -18.12 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.06 2.55 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274341803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.704 kcal (2) G-P(sol) polarization free energy of solvation -82.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds