Wall clock time and date at job start Tue Mar 31 2020 17:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34072 * 118.85462 * 2 1 4 4 C 1.41508 * 118.44256 * 0.56104 * 3 2 1 5 5 O 1.21775 * 120.00593 * 98.16787 * 4 3 2 6 6 N 1.34784 * 119.99795 * 278.16808 * 4 3 2 7 7 C 1.46499 * 119.99816 * 5.20445 * 6 4 3 8 8 C 1.50702 * 109.47322 * 270.00111 * 7 6 4 9 9 H 1.08000 * 119.99844 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00169 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99856 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00191 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47318 * 59.99843 * 12 10 8 14 14 H 1.48508 * 109.47250 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46881 * 299.99564 * 12 10 8 16 16 C 1.46501 * 119.99963 * 185.21000 * 6 4 3 17 17 C 1.52992 * 109.47323 * 94.43461 * 16 6 4 18 18 C 1.53007 * 117.49629 * 244.91232 * 17 16 6 19 19 C 1.53008 * 60.00030 * 252.51033 * 18 17 16 20 20 C 1.50606 * 123.11870 * 180.28119 * 3 2 1 21 21 N 1.45813 * 109.39116 * 348.30500 * 20 3 2 22 22 N 1.39341 * 130.70109 * 191.72971 * 21 20 3 23 23 N 1.29412 * 106.49643 * 180.32821 * 22 21 20 24 24 N 1.28912 * 110.39187 * 359.91070 * 23 22 21 25 25 C 1.30236 * 110.28914 * 359.93045 * 24 23 22 26 26 N 1.37379 * 118.84970 * 180.24989 * 2 1 3 27 27 C 1.46503 * 121.37029 * 12.11741 * 26 2 1 28 28 H 1.09008 * 109.46821 * 94.79936 * 1 2 3 29 29 H 1.08998 * 109.47483 * 214.79579 * 1 2 3 30 30 H 1.08994 * 109.47090 * 334.80115 * 1 2 3 31 31 H 1.08993 * 109.47433 * 30.00032 * 7 6 4 32 32 H 1.09007 * 109.46796 * 150.00233 * 7 6 4 33 33 H 0.97000 * 120.00090 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.46651 * 334.43068 * 16 6 4 35 35 H 1.09001 * 109.46723 * 214.43633 * 16 6 4 36 36 H 1.08999 * 115.55191 * 30.61985 * 17 16 6 37 37 H 1.09003 * 117.49932 * 359.97438 * 18 17 16 38 38 H 1.09004 * 117.49926 * 145.02380 * 18 17 16 39 39 H 1.08995 * 117.49665 * 252.51497 * 19 18 17 40 40 H 1.09002 * 117.49681 * 107.48935 * 19 18 17 41 41 H 1.09003 * 109.48598 * 108.28098 * 20 3 2 42 42 H 1.08991 * 109.48281 * 228.31616 * 20 3 2 43 43 H 1.08995 * 109.47428 * 180.23438 * 27 26 2 44 44 H 1.08998 * 109.46566 * 300.23719 * 27 26 2 45 45 H 1.09003 * 109.46902 * 60.23189 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1540 1.1743 0.0000 4 6 1.3895 2.3650 0.0122 5 8 1.1956 2.9535 1.0605 6 7 0.8760 2.8479 -1.1366 7 6 1.0115 2.0824 -2.3783 8 6 2.2869 2.4790 -3.0764 9 1 2.9318 3.2268 -2.6390 10 6 2.6299 1.8879 -4.2738 11 7 1.8443 0.9776 -4.8066 12 14 4.2111 2.3790 -5.1387 13 1 5.3687 2.0939 -4.2534 14 1 4.3484 1.6030 -6.3975 15 1 4.1734 3.8300 -5.4527 16 6 0.1825 4.1383 -1.1436 17 6 1.1663 5.2440 -1.5311 18 6 1.4872 6.3055 -0.4768 19 6 0.6121 6.6624 -1.6802 20 6 3.6559 1.2862 -0.0062 21 7 4.2400 -0.0215 0.2670 22 7 5.5493 -0.3855 0.5749 23 7 5.5488 -1.6715 0.7200 24 7 4.3639 -2.1440 0.5338 25 6 3.5317 -1.1808 0.2583 26 7 2.1699 -1.2033 -0.0052 27 6 1.4667 -2.4602 -0.2733 28 1 -0.3633 -0.0860 -1.0242 29 1 -0.3634 -0.8439 0.5864 30 1 -0.3633 0.9298 0.4375 31 1 1.0397 1.0176 -2.1475 32 1 0.1616 2.2909 -3.0283 33 1 2.0857 0.5615 -5.6489 34 1 -0.2187 4.3405 -0.1505 35 1 -0.6334 4.1084 -1.8658 36 1 1.9693 4.9441 -2.2044 37 1 0.9970 6.2162 0.4927 38 1 2.5016 6.7040 -0.4563 39 1 1.0509 7.2956 -2.4513 40 1 -0.4534 6.8077 -1.5022 41 1 3.9903 1.6370 -0.9825 42 1 3.9709 1.9929 0.7615 43 1 2.1729 -3.2890 -0.2257 44 1 0.6851 -2.6054 0.4725 45 1 1.0186 -2.4213 -1.2662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281115042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:27 Heat of formation + Delta-G solvation = 150.409512 kcal Electronic energy + Delta-G solvation = -30269.978639 eV Core-core repulsion = 26327.370042 eV Total energy + Delta-G solvation = -3942.608596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.00093 -40.35067 -38.54639 -36.95262 -35.13860 -34.83302 -33.02261 -32.60203 -31.52723 -29.09831 -27.99049 -27.77782 -26.86624 -24.78918 -23.38716 -23.05133 -22.32154 -22.04267 -20.76330 -19.73185 -18.55565 -17.62768 -17.07172 -16.77080 -16.48195 -16.06339 -15.44451 -15.25867 -14.84344 -14.64752 -14.50233 -14.26077 -13.73256 -13.62153 -13.08599 -13.01479 -13.00118 -12.64257 -12.44725 -12.28376 -12.20349 -12.12374 -11.71705 -11.54032 -11.37760 -11.27911 -11.22509 -11.11682 -10.86227 -10.84601 -10.52699 -10.34744 -9.96920 -9.79369 -9.75061 -9.57356 -9.43574 -8.67593 -7.93612 -7.62081 -6.31214 -4.37450 1.15956 1.68171 1.82091 2.47064 2.60920 3.09442 3.15269 3.21318 3.25008 3.82812 4.13102 4.18899 4.23494 4.63277 4.70778 4.93527 5.02633 5.08593 5.11250 5.22963 5.25096 5.34803 5.38176 5.44002 5.51781 5.53712 5.59690 5.68895 5.76536 5.84495 5.87635 5.88916 5.98255 6.07099 6.08310 6.17192 6.19630 6.39108 6.54669 6.79445 6.82468 6.99086 7.01578 7.35533 7.62727 7.92253 8.09957 8.60729 8.65470 8.76443 9.30145 10.75599 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.005584 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.337289 B = 5012.879973 C = 6091.008846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.179 3.821 3 C -0.241 4.241 4 C 0.585 3.415 5 O -0.563 6.563 6 N -0.583 5.583 7 C 0.237 3.763 8 C -0.535 4.535 9 H 0.062 0.938 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.887 3.113 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.150 3.850 17 C -0.158 4.158 18 C -0.180 4.180 19 C -0.182 4.182 20 C 0.197 3.803 21 N -0.390 5.390 22 N -0.074 5.074 23 N -0.035 5.035 24 N -0.354 5.354 25 C 0.478 3.522 26 N -0.505 5.505 27 C 0.095 3.905 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -0.371 6.257 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 C -0.253 4.253 4 C 0.372 3.628 5 O -0.444 6.444 6 N -0.312 5.312 7 C 0.117 3.883 8 C -0.574 4.574 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.526 5.526 12 Si 0.715 3.285 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.027 3.973 17 C -0.177 4.177 18 C -0.217 4.217 19 C -0.220 4.220 20 C 0.076 3.924 21 N -0.192 5.192 22 N -0.061 5.061 23 N -0.031 5.031 24 N -0.213 5.213 25 C 0.113 3.887 26 N -0.215 5.215 27 C -0.046 4.046 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.916 -0.829 6.884 8.500 hybrid contribution 0.321 0.869 -1.162 1.486 sum -4.595 0.039 5.723 7.339 Atomic orbital electron populations 1.21129 0.87709 1.04470 1.04640 1.19381 0.94388 0.82902 0.95450 1.19343 0.94320 0.93902 1.17705 1.16019 0.79125 0.83785 0.83901 1.90788 1.61075 1.61230 1.31267 1.48305 1.53353 1.19764 1.09799 1.19505 0.97704 0.91578 0.79480 1.21390 1.06517 1.23403 1.06061 0.92013 1.24880 0.96879 0.94723 0.96955 1.69876 1.37157 1.26243 1.19324 0.86716 0.83688 0.78912 0.79232 1.20110 1.21073 1.19929 1.20881 0.93194 0.81896 1.01329 1.22931 1.02874 0.89518 1.02382 1.22965 1.00309 1.04337 0.94116 1.22872 0.99255 0.98960 1.00868 1.20290 0.88268 0.79049 1.04822 1.51325 1.06592 1.09105 1.52188 1.82343 0.94537 1.07983 1.21222 1.78262 1.12159 1.01551 1.11117 1.74327 0.96300 1.23868 1.26839 1.21476 0.87364 0.84422 0.95403 1.42576 1.00681 1.07922 1.70292 1.22025 0.97661 0.82624 1.02329 0.88521 0.90260 0.89279 0.94206 0.94518 0.92463 0.90548 0.90651 0.86002 0.89007 0.89564 0.89233 0.89247 0.86417 0.88107 0.88573 0.90631 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.37 36.01 0.30 -1.21 16 2 C 0.18 2.79 5.51 -81.57 -0.45 2.34 16 3 C -0.24 -4.23 4.26 -104.89 -0.45 -4.68 16 4 C 0.58 10.71 4.60 -15.01 -0.07 10.64 16 5 O -0.56 -11.35 16.58 5.12 0.08 -11.26 16 6 N -0.58 -10.49 2.46 -178.51 -0.44 -10.93 16 7 C 0.24 4.87 4.83 -5.19 -0.03 4.84 16 8 C -0.54 -12.39 8.38 -34.44 -0.29 -12.68 16 9 H 0.06 1.45 6.65 -52.49 -0.35 1.10 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -22.80 13.29 55.43 0.74 -22.06 16 12 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C 0.15 2.42 5.82 -4.05 -0.02 2.40 16 17 C -0.16 -2.53 5.97 -90.62 -0.54 -3.07 16 18 C -0.18 -2.57 10.18 -26.72 -0.27 -2.84 16 19 C -0.18 -2.40 10.25 -26.72 -0.27 -2.68 16 20 C 0.20 3.52 7.24 -5.61 -0.04 3.48 16 21 N -0.39 -7.23 4.14 -63.62 -0.26 -7.50 16 22 N -0.07 -1.40 13.99 60.35 0.84 -0.56 16 23 N -0.04 -0.67 13.41 60.35 0.81 0.14 16 24 N -0.35 -6.45 11.78 30.06 0.35 -6.09 16 25 C 0.48 8.46 8.36 -320.70 -2.68 5.78 16 26 N -0.50 -7.58 3.15 -120.68 -0.38 -7.96 16 27 C 0.09 1.00 9.93 59.85 0.59 1.60 16 28 H 0.10 1.18 7.41 -51.92 -0.38 0.80 16 29 H 0.08 0.74 6.93 -51.93 -0.36 0.38 16 30 H 0.09 1.19 6.58 -51.93 -0.34 0.85 16 31 H 0.04 0.84 4.92 -51.93 -0.26 0.59 16 32 H 0.04 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.08 1.21 6.97 -51.93 -0.36 0.85 16 35 H 0.08 1.13 7.96 -51.93 -0.41 0.71 16 36 H 0.12 2.27 6.26 -51.93 -0.33 1.94 16 37 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.12 2.25 7.82 -51.93 -0.41 1.84 16 42 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.10 1.00 7.64 -51.93 -0.40 0.60 16 44 H 0.08 0.59 7.21 -51.93 -0.37 0.21 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -28.63 370.15 -8.05 -36.68 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.05 Total: 3.64 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -4.31 Total: 5.52 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 1.66 Total: -54.97 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.63 -8.05 -36.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281115042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.092 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds