Wall clock time and date at job start Tue Mar 31 2020 16:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47758 * 32.72388 * 3 2 1 5 5 C 1.36936 * 119.99772 * 264.02738 * 4 3 2 6 6 H 1.07995 * 119.99693 * 201.53396 * 5 4 3 7 7 C 1.38817 * 120.00150 * 21.53049 * 5 4 3 8 8 N 1.31618 * 119.99690 * 17.60406 * 7 5 4 9 9 Si 1.86799 * 120.00075 * 197.60395 * 7 5 4 10 10 H 1.48508 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46932 * 120.00030 * 9 7 5 12 12 H 1.48487 * 109.47244 * 239.99998 * 9 7 5 13 13 C 1.46497 * 120.00165 * 84.01884 * 4 3 2 14 14 C 1.50702 * 109.46799 * 90.00188 * 13 4 3 15 15 O 1.21283 * 120.00244 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99921 * 179.97438 * 14 13 4 17 17 C 1.46499 * 119.99926 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47270 * 272.68745 * 17 16 14 19 19 C 1.46496 * 119.99910 * 180.02562 * 16 14 13 20 20 H 1.08997 * 109.47358 * 54.77166 * 19 16 14 21 21 C 1.53004 * 109.47086 * 174.76959 * 19 16 14 22 22 C 1.50703 * 109.47213 * 294.76878 * 19 16 14 23 23 C 1.38245 * 119.97157 * 135.43980 * 22 19 16 24 24 C 1.38192 * 120.02530 * 180.02562 * 23 22 19 25 25 C 1.38457 * 119.97572 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.03142 * 179.97438 * 25 24 23 27 27 C 1.38466 * 119.94839 * 0.25482 * 25 24 23 28 28 C 1.38202 * 119.96977 * 359.51583 * 27 25 24 29 29 H 4.40646 * 5.51474 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47357 * 272.71483 * 3 2 1 31 31 H 1.09006 * 109.46563 * 152.72203 * 3 2 1 32 32 H 0.97002 * 119.99791 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46966 * 330.00842 * 13 4 3 34 34 H 1.08992 * 109.47510 * 210.00406 * 13 4 3 35 35 H 1.08995 * 109.47139 * 32.69126 * 17 16 14 36 36 H 1.09008 * 109.47078 * 152.68922 * 17 16 14 37 37 H 1.08999 * 109.46676 * 60.00205 * 18 17 16 38 38 H 1.08997 * 109.47472 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47041 * 300.00552 * 18 17 16 40 40 H 1.08998 * 109.46992 * 300.00319 * 21 19 16 41 41 H 1.09005 * 109.46960 * 60.00221 * 21 19 16 42 42 H 1.09005 * 109.46862 * 179.97438 * 21 19 16 43 43 H 1.08005 * 119.99137 * 0.02562 * 23 22 19 44 44 H 1.08005 * 120.01504 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.01323 * 179.74486 * 27 25 24 46 46 H 1.07994 * 119.98688 * 180.25374 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.1611 -0.7467 5 6 3.4801 -2.3070 -0.0811 6 1 4.1468 -3.0199 -0.5432 7 6 2.9731 -2.5521 1.1878 8 7 1.9172 -1.8917 1.6134 9 14 3.7895 -3.8193 2.2910 10 1 4.9500 -4.4175 1.5832 11 1 4.2561 -3.1624 3.5384 12 1 2.8120 -4.8849 2.6285 13 6 3.2546 -1.0970 -2.2053 14 6 4.6276 -0.5981 -2.5753 15 8 5.4277 -0.3235 -1.7061 16 7 4.9669 -0.4579 -3.8721 17 6 4.0007 -0.7901 -4.9220 18 6 4.1059 -2.2786 -5.2596 19 6 6.3018 0.0266 -4.2317 20 1 7.0562 -0.6012 -3.7575 21 6 6.4728 -0.0302 -5.7511 22 6 6.4637 1.4490 -3.7609 23 6 7.6288 1.8382 -3.1267 24 6 7.7782 3.1421 -2.6940 25 6 6.7607 4.0590 -2.8964 26 9 6.9054 5.3340 -2.4734 27 6 5.5923 3.6669 -3.5275 28 6 5.4471 2.3635 -3.9636 29 1 -1.0498 -0.0003 -0.0004 30 1 3.0093 -0.0479 1.0265 31 1 3.0088 0.9143 -0.4710 32 1 1.5627 -2.0633 2.4999 33 1 2.5015 -0.4161 -2.6020 34 1 3.1035 -2.0909 -2.6263 35 1 2.9929 -0.5672 -4.5720 36 1 4.2149 -0.1995 -5.8129 37 1 3.8918 -2.8691 -4.3687 38 1 3.3874 -2.5257 -6.0411 39 1 5.1139 -2.5015 -5.6095 40 1 6.3557 -1.0590 -6.0916 41 1 5.7185 0.5976 -6.2254 42 1 7.4660 0.3307 -6.0187 43 1 8.4226 1.1230 -2.9692 44 1 8.6887 3.4461 -2.1989 45 1 4.7963 4.3802 -3.6822 46 1 4.5375 2.0585 -4.4595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281413406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:03 Heat of formation + Delta-G solvation = 40.455902 kcal Electronic energy + Delta-G solvation = -29207.521838 eV Core-core repulsion = 25207.932583 eV Total energy + Delta-G solvation = -3999.589256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.85483 -40.17061 -38.49831 -36.33345 -35.39303 -32.93587 -31.51371 -31.13083 -31.06821 -29.86782 -29.02607 -27.10892 -25.86600 -24.15430 -23.03733 -22.85822 -22.10525 -20.70171 -18.60449 -17.63526 -17.46226 -16.83201 -16.56320 -16.36279 -15.80502 -15.55081 -15.49689 -14.88160 -14.63324 -14.09910 -13.85462 -13.68578 -13.51779 -13.30808 -13.26368 -13.14896 -13.04540 -12.59152 -12.48893 -12.39784 -12.24903 -11.81424 -11.55288 -11.43622 -11.26308 -11.16192 -11.05004 -10.92406 -10.79548 -10.58462 -10.19844 -10.00374 -9.29984 -9.06567 -8.91018 -8.74945 -8.54641 -8.36771 -8.30606 -6.94410 -5.74945 -3.21099 1.15925 1.27816 3.22344 3.38397 3.40454 3.48005 3.50854 3.68143 4.19280 4.29090 4.41543 4.56716 4.66021 4.71018 4.85521 4.90785 4.96061 5.11951 5.24439 5.27933 5.34345 5.37615 5.43189 5.49524 5.54649 5.61460 5.74095 5.81936 5.85844 5.88222 5.91502 5.97128 6.05525 6.13484 6.14715 6.18944 6.27231 6.37154 6.52874 6.76832 6.88772 6.92991 7.28668 7.45367 7.76720 7.84522 8.29944 8.93151 9.12089 9.22195 9.76442 10.22039 11.28129 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004003 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.903340 B = 6992.430458 C = 7755.084900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.091 4.091 3 C 0.273 3.727 4 N -0.561 5.561 5 C -0.256 4.256 6 H 0.070 0.930 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.903 3.097 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.136 3.864 14 C 0.482 3.518 15 O -0.510 6.510 16 N -0.622 5.622 17 C 0.101 3.899 18 C -0.173 4.173 19 C 0.185 3.815 20 H 0.081 0.919 21 C -0.155 4.155 22 C -0.087 4.087 23 C -0.072 4.072 24 C -0.153 4.153 25 C 0.091 3.909 26 F -0.145 7.145 27 C -0.154 4.154 28 C -0.075 4.075 29 H 0.190 0.810 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 6.866 -17.457 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.094 4.094 3 C 0.148 3.852 4 N -0.278 5.278 5 C -0.385 4.385 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.533 5.533 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.004 3.996 14 C 0.268 3.732 15 O -0.382 6.382 16 N -0.361 5.361 17 C -0.022 4.022 18 C -0.232 4.232 19 C 0.082 3.918 20 H 0.099 0.901 21 C -0.212 4.212 22 C -0.089 4.089 23 C -0.090 4.090 24 C -0.172 4.172 25 C 0.071 3.929 26 F -0.124 7.124 27 C -0.173 4.173 28 C -0.093 4.093 29 H 0.207 0.793 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.368 7.005 -16.721 19.569 hybrid contribution 0.085 -0.539 0.862 1.020 sum 7.453 6.466 -15.859 18.678 Atomic orbital electron populations 1.24135 0.95258 1.06356 1.06390 1.24210 0.95171 0.94831 0.95198 1.17640 0.82612 0.86922 0.98045 1.43552 1.73635 1.11804 0.98853 1.19116 1.22266 0.98009 0.99098 0.91215 1.24942 0.96192 0.98957 0.99196 1.70075 1.20726 1.43844 1.18642 0.86215 0.78895 0.80687 0.80891 1.20325 1.21509 1.21852 1.20739 0.90913 1.00365 0.87602 1.23188 0.92541 0.76888 0.80591 1.90647 1.52122 1.47596 1.47798 1.48581 1.13122 1.67762 1.06612 1.21571 0.93137 0.95931 0.91569 1.22288 1.01860 0.96798 1.02225 1.19717 0.86691 0.90410 0.95019 0.90080 1.22149 1.02572 1.02756 0.93731 1.20204 0.94214 0.95879 0.98559 1.20804 0.97543 0.94857 0.95844 1.21061 0.99218 0.93650 1.03221 1.17701 0.96001 0.79217 0.99946 1.91478 1.96153 1.36548 1.88174 1.21077 0.96946 0.97738 1.01508 1.20735 0.98487 0.91668 0.98410 0.79273 0.88775 0.94806 0.93549 0.91643 0.90272 0.90329 0.90371 0.91749 0.91883 0.92548 0.91249 0.91651 0.91367 0.85257 0.85025 0.85066 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.89 19.25 29.55 0.57 -6.32 16 2 C -0.09 -2.25 11.41 -37.12 -0.42 -2.67 16 3 C 0.27 6.79 5.41 -6.83 -0.04 6.75 16 4 N -0.56 -13.93 1.97 -177.95 -0.35 -14.28 16 5 C -0.26 -7.01 9.64 -15.06 -0.15 -7.15 16 6 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 7 C 0.01 0.17 4.93 -17.43 -0.09 0.08 16 8 N -0.89 -25.57 9.39 55.49 0.52 -25.04 16 9 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C 0.14 2.67 4.74 -5.19 -0.02 2.64 16 14 C 0.48 8.91 7.46 -10.98 -0.08 8.83 16 15 O -0.51 -11.62 15.79 5.55 0.09 -11.53 16 16 N -0.62 -8.32 2.03 -167.43 -0.34 -8.66 16 17 C 0.10 1.00 5.25 -4.04 -0.02 0.98 16 18 C -0.17 -1.64 10.08 37.16 0.37 -1.26 16 19 C 0.19 2.22 2.80 -69.08 -0.19 2.02 16 20 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 21 C -0.15 -1.26 7.97 37.16 0.30 -0.96 16 22 C -0.09 -1.12 3.89 -104.62 -0.41 -1.53 16 23 C -0.07 -0.92 9.66 -39.60 -0.38 -1.30 16 24 C -0.15 -1.94 10.03 -39.52 -0.40 -2.34 16 25 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 26 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 27 C -0.15 -1.95 10.03 -39.51 -0.40 -2.35 16 28 C -0.07 -0.94 9.25 -39.59 -0.37 -1.30 16 29 H 0.19 3.60 7.80 -54.10 -0.42 3.18 16 30 H 0.09 2.60 6.61 -51.93 -0.34 2.26 16 31 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.07 1.17 7.33 -51.93 -0.38 0.79 16 34 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 35 H 0.08 0.78 6.55 -51.93 -0.34 0.44 16 36 H 0.08 0.59 5.70 -51.92 -0.30 0.29 16 37 H 0.06 0.75 6.89 -51.93 -0.36 0.40 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.50 6.65 -51.93 -0.35 0.16 16 40 H 0.07 0.51 6.34 -51.93 -0.33 0.19 16 41 H 0.06 0.48 6.65 -51.93 -0.35 0.13 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.13 1.44 8.00 -52.48 -0.42 1.02 16 44 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.13 1.41 7.86 -52.49 -0.41 1.00 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -33.18 384.25 -7.71 -40.88 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.42 Total: 2.61 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.01 Total: -4.94 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.17 Total: -47.98 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.18 -7.71 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281413406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.340 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds