Wall clock time and date at job start Tue Mar 31 2020 16:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47758 * 32.72388 * 3 2 1 5 5 C 1.36936 * 119.99772 * 264.02738 * 4 3 2 6 6 H 1.07995 * 119.99693 * 201.53396 * 5 4 3 7 7 C 1.38817 * 120.00150 * 21.53049 * 5 4 3 8 8 N 1.31618 * 119.99690 * 17.60406 * 7 5 4 9 9 Si 1.86799 * 120.00075 * 197.60395 * 7 5 4 10 10 H 1.48508 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46932 * 120.00030 * 9 7 5 12 12 H 1.48487 * 109.47244 * 239.99998 * 9 7 5 13 13 C 1.46497 * 120.00165 * 84.01884 * 4 3 2 14 14 C 1.50702 * 109.46799 * 90.00188 * 13 4 3 15 15 O 1.21283 * 120.00244 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99921 * 179.97438 * 14 13 4 17 17 C 1.46499 * 119.99926 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47270 * 272.68745 * 17 16 14 19 19 C 1.46496 * 119.99910 * 180.02562 * 16 14 13 20 20 H 1.08997 * 109.47358 * 54.77166 * 19 16 14 21 21 C 1.53004 * 109.47086 * 174.76959 * 19 16 14 22 22 C 1.50703 * 109.47213 * 294.76878 * 19 16 14 23 23 C 1.38245 * 119.97157 * 135.43980 * 22 19 16 24 24 C 1.38192 * 120.02530 * 180.02562 * 23 22 19 25 25 C 1.38457 * 119.97572 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.03142 * 179.97438 * 25 24 23 27 27 C 1.38466 * 119.94839 * 0.25482 * 25 24 23 28 28 C 1.38202 * 119.96977 * 359.51583 * 27 25 24 29 29 H 4.40646 * 5.51474 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47357 * 272.71483 * 3 2 1 31 31 H 1.09006 * 109.46563 * 152.72203 * 3 2 1 32 32 H 0.97002 * 119.99791 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46966 * 330.00842 * 13 4 3 34 34 H 1.08992 * 109.47510 * 210.00406 * 13 4 3 35 35 H 1.08995 * 109.47139 * 32.69126 * 17 16 14 36 36 H 1.09008 * 109.47078 * 152.68922 * 17 16 14 37 37 H 1.08999 * 109.46676 * 60.00205 * 18 17 16 38 38 H 1.08997 * 109.47472 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47041 * 300.00552 * 18 17 16 40 40 H 1.08998 * 109.46992 * 300.00319 * 21 19 16 41 41 H 1.09005 * 109.46960 * 60.00221 * 21 19 16 42 42 H 1.09005 * 109.46862 * 179.97438 * 21 19 16 43 43 H 1.08005 * 119.99137 * 0.02562 * 23 22 19 44 44 H 1.08005 * 120.01504 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.01323 * 179.74486 * 27 25 24 46 46 H 1.07994 * 119.98688 * 180.25374 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.1611 -0.7467 5 6 3.4801 -2.3070 -0.0811 6 1 4.1468 -3.0199 -0.5432 7 6 2.9731 -2.5521 1.1878 8 7 1.9172 -1.8917 1.6134 9 14 3.7895 -3.8193 2.2910 10 1 4.9500 -4.4175 1.5832 11 1 4.2561 -3.1624 3.5384 12 1 2.8120 -4.8849 2.6285 13 6 3.2546 -1.0970 -2.2053 14 6 4.6276 -0.5981 -2.5753 15 8 5.4277 -0.3235 -1.7061 16 7 4.9669 -0.4579 -3.8721 17 6 4.0007 -0.7901 -4.9220 18 6 4.1059 -2.2786 -5.2596 19 6 6.3018 0.0266 -4.2317 20 1 7.0562 -0.6012 -3.7575 21 6 6.4728 -0.0302 -5.7511 22 6 6.4637 1.4490 -3.7609 23 6 7.6288 1.8382 -3.1267 24 6 7.7782 3.1421 -2.6940 25 6 6.7607 4.0590 -2.8964 26 9 6.9054 5.3340 -2.4734 27 6 5.5923 3.6669 -3.5275 28 6 5.4471 2.3635 -3.9636 29 1 -1.0498 -0.0003 -0.0004 30 1 3.0093 -0.0479 1.0265 31 1 3.0088 0.9143 -0.4710 32 1 1.5627 -2.0633 2.4999 33 1 2.5015 -0.4161 -2.6020 34 1 3.1035 -2.0909 -2.6263 35 1 2.9929 -0.5672 -4.5720 36 1 4.2149 -0.1995 -5.8129 37 1 3.8918 -2.8691 -4.3687 38 1 3.3874 -2.5257 -6.0411 39 1 5.1139 -2.5015 -5.6095 40 1 6.3557 -1.0590 -6.0916 41 1 5.7185 0.5976 -6.2254 42 1 7.4660 0.3307 -6.0187 43 1 8.4226 1.1230 -2.9692 44 1 8.6887 3.4461 -2.1989 45 1 4.7963 4.3802 -3.6822 46 1 4.5375 2.0585 -4.4595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281413406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:02 Heat of formation + Delta-G solvation = 23.817331 kcal Electronic energy + Delta-G solvation = -29208.243341 eV Core-core repulsion = 25207.932583 eV Total energy + Delta-G solvation = -4000.310758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90282 -41.32412 -39.68275 -37.79457 -36.98815 -33.98787 -33.47195 -32.85303 -32.08036 -30.90210 -29.96050 -28.71201 -27.84382 -25.05675 -24.34852 -23.92311 -23.40665 -21.95122 -19.78978 -19.36791 -18.65865 -18.24210 -18.06471 -17.50695 -17.09847 -16.85218 -16.59433 -16.45809 -15.93025 -15.54860 -15.28486 -14.96021 -14.79666 -14.68092 -14.46800 -14.30749 -14.05220 -13.96453 -13.44201 -13.40201 -13.33113 -13.18560 -13.02883 -12.80210 -12.72930 -12.53147 -12.40399 -12.24073 -12.04358 -11.99766 -11.85425 -11.58471 -10.99404 -10.77373 -10.56514 -10.30861 -10.04099 -9.63864 -9.40503 -8.88371 -7.83652 -5.30143 0.15481 0.30276 1.42535 1.46742 1.55573 1.93988 2.07816 2.37328 2.52215 2.59701 2.68920 3.29822 3.29988 3.72309 3.76526 3.79205 3.91844 3.96057 4.09504 4.16551 4.26134 4.30076 4.39333 4.41815 4.49893 4.60410 4.67362 4.69437 4.76572 4.91778 4.92446 5.00241 5.03618 5.09260 5.13936 5.15911 5.25568 5.26371 5.30443 5.53728 5.54832 5.61548 5.66072 5.86515 5.94579 6.25736 6.60313 7.07196 7.36989 7.51822 7.79630 8.20658 9.17183 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004003 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.903340 B = 6992.430458 C = 7755.084900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.134 4.134 3 C 0.283 3.717 4 N -0.578 5.578 5 C -0.258 4.258 6 H 0.062 0.938 7 C -0.042 4.042 8 N -0.911 5.911 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.486 3.514 15 O -0.562 6.562 16 N -0.608 5.608 17 C 0.093 3.907 18 C -0.169 4.169 19 C 0.184 3.816 20 H 0.063 0.937 21 C -0.146 4.146 22 C -0.095 4.095 23 C -0.085 4.085 24 C -0.158 4.158 25 C 0.070 3.930 26 F -0.151 7.151 27 C -0.159 4.159 28 C -0.081 4.081 29 H 0.226 0.774 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 6.684 -20.027 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.136 4.136 3 C 0.157 3.843 4 N -0.297 5.297 5 C -0.388 4.388 6 H 0.080 0.920 7 C -0.238 4.238 8 N -0.555 5.555 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.215 1.215 13 C 0.005 3.995 14 C 0.273 3.727 15 O -0.438 6.438 16 N -0.344 5.344 17 C -0.029 4.029 18 C -0.228 4.228 19 C 0.080 3.920 20 H 0.082 0.918 21 C -0.203 4.203 22 C -0.096 4.096 23 C -0.104 4.104 24 C -0.177 4.177 25 C 0.051 3.949 26 F -0.129 7.129 27 C -0.177 4.177 28 C -0.099 4.099 29 H 0.243 0.757 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.893 6.822 -19.387 21.677 hybrid contribution 0.241 -0.454 1.540 1.623 sum 7.134 6.367 -17.847 20.247 Atomic orbital electron populations 1.24966 0.96167 1.04510 1.04323 1.24340 0.95671 0.96567 0.97060 1.17336 0.83305 0.87436 0.96193 1.43634 1.74178 1.10977 1.00861 1.19253 1.21485 0.98464 0.99620 0.92020 1.25552 0.96919 1.01003 1.00317 1.70217 1.21770 1.45210 1.18347 0.85348 0.78092 0.78795 0.78986 1.19952 1.22144 1.21543 1.20896 0.92287 1.01370 0.84938 1.22632 0.91468 0.76645 0.81977 1.90631 1.53176 1.50222 1.49802 1.48421 1.14386 1.65957 1.05613 1.21916 0.92322 0.96998 0.91637 1.22247 1.03077 0.95703 1.01731 1.19863 0.85025 0.89452 0.97630 0.91849 1.22130 1.03899 1.03986 0.90292 1.20392 0.94389 0.96366 0.98459 1.21029 0.98195 0.95146 0.96012 1.21281 0.99729 0.93635 1.03057 1.17947 0.96809 0.79235 1.00880 1.91457 1.96239 1.36891 1.88363 1.21326 0.97077 0.98304 1.01009 1.20935 0.98912 0.91506 0.98535 0.75718 0.92510 0.93897 0.94293 0.89754 0.89604 0.90134 0.86817 0.94526 0.89403 0.91843 0.90045 0.90075 0.90151 0.84327 0.83652 0.83485 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.38 19.25 74.32 1.43 -10.95 16 2 C -0.13 -6.57 11.41 31.12 0.35 -6.22 16 3 C 0.28 14.41 5.41 84.57 0.46 14.86 16 4 N -0.58 -29.13 1.97 -716.92 -1.41 -30.54 16 5 C -0.26 -14.41 9.64 84.03 0.81 -13.60 16 6 H 0.06 3.46 7.89 -2.91 -0.02 3.43 16 7 C -0.04 -2.35 4.93 84.86 0.42 -1.93 16 8 N -0.91 -53.29 9.39 21.65 0.20 -53.09 16 9 Si 0.96 46.47 29.59 68.60 2.03 48.50 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.14 5.26 4.74 85.63 0.41 5.67 16 14 C 0.49 17.82 7.46 87.66 0.65 18.48 16 15 O -0.56 -26.09 15.79 -3.04 -0.05 -26.14 16 16 N -0.61 -15.19 2.03 -802.00 -1.63 -16.82 16 17 C 0.09 1.54 5.25 86.38 0.45 1.99 16 18 C -0.17 -2.71 10.08 71.98 0.73 -1.98 16 19 C 0.18 4.07 2.80 44.25 0.12 4.20 16 20 H 0.06 1.66 7.94 -2.39 -0.02 1.64 16 21 C -0.15 -1.86 7.97 71.98 0.57 -1.29 16 22 C -0.09 -2.33 3.89 -19.86 -0.08 -2.41 16 23 C -0.09 -2.14 9.66 22.26 0.22 -1.93 16 24 C -0.16 -3.99 10.03 22.31 0.22 -3.77 16 25 C 0.07 1.88 7.30 22.38 0.16 2.04 16 26 F -0.15 -4.16 17.27 44.97 0.78 -3.38 16 27 C -0.16 -3.86 10.03 22.32 0.22 -3.63 16 28 C -0.08 -1.89 9.25 22.26 0.21 -1.68 16 29 H 0.23 7.85 7.80 -4.43 -0.03 7.82 16 30 H 0.06 3.28 6.61 -2.39 -0.02 3.27 16 31 H 0.04 2.04 8.12 -2.38 -0.02 2.02 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.08 2.92 7.33 -2.39 -0.02 2.90 16 34 H 0.09 3.19 6.72 -2.39 -0.02 3.18 16 35 H 0.08 1.35 6.55 -2.39 -0.02 1.34 16 36 H 0.11 1.15 5.70 -2.38 -0.01 1.14 16 37 H 0.04 0.80 6.89 -2.39 -0.02 0.78 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.93 6.65 -2.39 -0.02 0.92 16 40 H 0.08 0.88 6.34 -2.39 -0.02 0.86 16 41 H 0.08 0.81 6.65 -2.38 -0.02 0.79 16 42 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.14 3.09 8.00 -2.91 -0.02 3.06 16 44 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 45 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.14 2.78 7.86 -2.91 -0.02 2.76 16 Total: -1.00 -73.66 384.25 8.26 -65.40 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.98 Total: 18.23 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 7.36 Total: -2.16 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -2.84 Total: -100.45 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.66 8.26 -65.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281413406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.214 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds