Wall clock time and date at job start Tue Mar 31 2020 17:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31414 * 119.85510 * 2 1 4 4 C 1.33794 * 120.86848 * 180.02562 * 3 2 1 5 5 N 1.32894 * 132.36489 * 179.97438 * 4 3 2 6 6 C 1.33083 * 109.71028 * 180.02562 * 5 4 3 7 7 N 1.39231 * 125.27809 * 180.02562 * 6 5 4 8 8 N 1.31744 * 109.43924 * 0.02562 * 6 5 4 9 9 N 1.36644 * 120.28514 * 0.02562 * 4 3 2 10 10 C 1.35854 * 120.28174 * 359.71699 * 9 4 3 11 11 C 1.50700 * 120.47947 * 180.30049 * 10 9 4 12 12 C 1.35871 * 119.04242 * 0.55068 * 10 9 4 13 13 C 1.50697 * 120.38396 * 179.73182 * 12 10 9 14 14 C 1.50704 * 109.47033 * 269.72480 * 13 12 10 15 15 O 1.21276 * 119.99791 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00250 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99674 * 0.02562 * 16 14 13 18 18 C 1.46503 * 120.00310 * 179.97438 * 16 14 13 19 19 H 1.08999 * 109.46849 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.46749 * 119.99959 * 18 16 14 21 21 C 1.50692 * 109.47272 * 240.00000 * 18 16 14 22 22 H 1.08003 * 120.00316 * 354.37084 * 21 18 16 23 23 C 1.37875 * 120.00133 * 174.37226 * 21 18 16 24 24 N 1.31516 * 120.00510 * 156.90156 * 23 21 18 25 25 Si 1.86810 * 119.99756 * 337.17312 * 23 21 18 26 26 H 1.48501 * 109.47061 * 179.72434 * 25 23 21 27 27 H 1.48495 * 109.46894 * 299.72787 * 25 23 21 28 28 H 1.48496 * 109.46696 * 59.72479 * 25 23 21 29 29 H 1.09006 * 109.47459 * 269.97997 * 1 2 3 30 30 H 1.08998 * 109.47196 * 29.98158 * 1 2 3 31 31 H 1.08997 * 109.47103 * 149.97972 * 1 2 3 32 32 H 0.97001 * 119.99896 * 359.97438 * 7 6 5 33 33 H 0.96995 * 119.99783 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46986 * 270.25620 * 11 10 9 35 35 H 1.09006 * 109.46841 * 30.25326 * 11 10 9 36 36 H 1.08993 * 109.47083 * 150.25271 * 11 10 9 37 37 H 1.08998 * 109.47134 * 149.72432 * 13 12 10 38 38 H 1.09003 * 109.47160 * 29.72157 * 13 12 10 39 39 H 1.09007 * 109.46817 * 269.99788 * 17 16 14 40 40 H 1.08992 * 109.47593 * 29.99650 * 17 16 14 41 41 H 1.08998 * 109.47142 * 150.00162 * 17 16 14 42 42 H 1.09002 * 109.47176 * 173.30506 * 20 18 16 43 43 H 1.09005 * 109.47375 * 293.30343 * 20 18 16 44 44 H 1.09000 * 109.47483 * 53.30246 * 20 18 16 45 45 H 0.96989 * 119.99527 * 355.20009 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1612 1.1397 0.0000 4 6 3.4989 1.1634 -0.0005 5 7 4.3769 2.1610 -0.0011 6 6 5.6139 1.6702 -0.0020 7 7 6.7806 2.4301 -0.0023 8 7 5.5633 0.3537 -0.0026 9 7 4.2088 -0.0042 -0.0016 10 6 3.5622 -1.1990 0.0037 11 6 4.3407 -2.4894 0.0093 12 6 2.2036 -1.2138 -0.0014 13 6 1.4556 -2.5220 -0.0019 14 6 1.2057 -2.9573 -1.4230 15 8 1.5962 -2.2723 -2.3445 16 7 0.5475 -4.1071 -1.6697 17 6 0.0744 -4.9337 -0.5565 18 6 0.3041 -4.5300 -3.0511 19 1 0.7251 -3.7938 -3.7359 20 6 0.9661 -5.8879 -3.2929 21 6 -1.1798 -4.6453 -3.2871 22 1 -1.8690 -4.5148 -2.4659 23 6 -1.6577 -4.9176 -4.5514 24 7 -2.8469 -5.4585 -4.7026 25 14 -0.6128 -4.5252 -6.0494 26 1 -1.3456 -4.9164 -7.2803 27 1 -0.3267 -3.0685 -6.0854 28 1 0.6645 -5.2788 -5.9731 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 6.7284 3.3988 -0.0021 33 1 7.6454 1.9910 -0.0026 34 1 4.5323 -2.8026 -1.0169 35 1 5.2885 -2.3396 0.5265 36 1 3.7644 -3.2591 0.5226 37 1 0.5029 -2.3960 0.5123 38 1 2.0481 -3.2795 0.5112 39 1 0.8490 -5.6493 -0.2805 40 1 -0.1528 -4.2967 0.2982 41 1 -0.8248 -5.4703 -0.8589 42 1 0.6868 -6.2578 -4.2794 43 1 2.0493 -5.7789 -3.2391 44 1 0.6339 -6.5947 -2.5324 45 1 -3.3586 -5.7299 -3.9247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331000964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:31 Heat of formation + Delta-G solvation = 107.364958 kcal Electronic energy + Delta-G solvation = -29100.336043 eV Core-core repulsion = 25155.860895 eV Total energy + Delta-G solvation = -3944.475148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.89576 -40.05017 -38.78100 -35.73664 -35.56533 -34.80896 -33.06786 -32.42142 -31.53377 -30.43703 -28.99441 -28.63156 -26.83871 -26.28787 -24.83858 -23.23332 -22.37741 -21.14204 -21.01123 -18.77758 -18.60505 -18.07248 -17.61535 -16.96419 -16.52893 -16.34875 -15.89816 -15.38387 -15.25771 -14.68850 -14.10695 -14.01130 -13.82152 -13.63236 -13.52536 -13.06128 -12.85771 -12.75064 -12.63941 -12.45151 -12.39995 -12.33629 -11.99187 -11.86101 -11.72820 -11.61956 -11.55197 -11.29389 -10.56274 -10.36653 -10.15264 -10.12478 -9.96511 -9.84010 -9.31668 -9.19990 -8.76917 -8.45404 -8.37494 -7.89665 -6.57343 -4.20444 0.42587 0.72546 1.76920 2.63771 2.81723 3.06056 3.34950 3.36063 3.46004 3.51831 3.58332 3.73254 3.98133 4.19340 4.42312 4.46776 4.73015 4.80408 4.92917 4.99347 5.11176 5.16809 5.30480 5.35958 5.39578 5.49825 5.55566 5.59017 5.75783 5.79863 5.85781 6.01834 6.11964 6.17226 6.18176 6.27240 6.34788 6.52263 6.86597 7.02361 7.05871 7.09222 7.33040 7.50348 7.76129 8.12192 8.18085 8.25820 8.64287 8.82776 9.44771 10.78125 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.003127 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.507876 B = 8951.832414 C = 9048.272051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.259 3.741 3 N -0.473 5.473 4 C 0.478 3.522 5 N -0.566 5.566 6 C 0.514 3.486 7 N -0.815 5.815 8 N -0.388 5.388 9 N -0.315 5.315 10 C 0.220 3.780 11 C -0.122 4.122 12 C -0.170 4.170 13 C -0.090 4.090 14 C 0.503 3.497 15 O -0.545 6.545 16 N -0.584 5.584 17 C 0.080 3.920 18 C 0.236 3.764 19 H 0.054 0.946 20 C -0.155 4.155 21 C -0.619 4.619 22 H 0.063 0.937 23 C 0.045 3.955 24 N -0.892 5.892 25 Si 1.029 2.971 26 H -0.283 1.283 27 H -0.279 1.279 28 H -0.276 1.276 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.417 0.583 33 H 0.416 0.584 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.046 0.954 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.921 5.535 14.729 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.191 5.191 4 C 0.117 3.883 5 N -0.307 5.307 6 C 0.143 3.857 7 N -0.371 5.371 8 N -0.232 5.232 9 N -0.093 5.093 10 C 0.100 3.900 11 C -0.179 4.179 12 C -0.178 4.178 13 C -0.131 4.131 14 C 0.289 3.711 15 O -0.424 6.424 16 N -0.315 5.315 17 C -0.064 4.064 18 C 0.134 3.866 19 H 0.072 0.928 20 C -0.214 4.214 21 C -0.656 4.656 22 H 0.081 0.919 23 C -0.162 4.162 24 N -0.524 5.524 25 Si 0.856 3.144 26 H -0.209 1.209 27 H -0.205 1.205 28 H -0.202 1.202 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.430 6.778 12.559 19.597 hybrid contribution 0.521 -0.566 1.671 1.839 sum 13.951 6.211 14.230 20.873 Atomic orbital electron populations 1.20972 0.86294 1.05707 1.04134 1.21812 0.97902 0.86106 0.84543 1.67834 1.01781 1.28478 1.20999 1.22361 0.89995 0.81305 0.94647 1.70507 0.97205 1.26734 1.36262 1.20270 0.87421 0.87106 0.90871 1.40919 1.02434 1.08301 1.85414 1.78609 0.89472 1.11228 1.43871 1.48227 1.06937 1.07271 1.46913 1.20407 0.91278 0.86483 0.91836 1.21081 1.00440 0.91128 1.05230 1.19550 0.90923 0.97207 1.10115 1.20657 1.01845 0.93152 0.97464 1.20176 0.79148 0.81731 0.90003 1.90697 1.52092 1.53574 1.45995 1.47983 1.53699 1.20944 1.08898 1.21685 1.00695 0.95219 0.88783 1.19182 0.97078 0.92141 0.78153 0.92824 1.22429 0.97352 0.99673 1.01924 1.22070 0.90256 1.55797 0.97519 0.91869 1.25586 0.97547 0.92572 1.00512 1.70872 1.13282 1.34221 1.34073 0.84252 0.75814 0.77741 0.76576 1.20885 1.20497 1.20221 0.88613 0.88878 0.88881 0.75134 0.75316 0.88273 0.89329 0.88566 0.86882 0.87474 0.93563 0.92399 0.89752 0.91967 0.95640 0.93447 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.41 36.01 0.34 -0.91 16 2 C 0.26 3.66 6.83 -82.13 -0.56 3.10 16 3 N -0.47 -7.88 10.40 -10.05 -0.10 -7.99 16 4 C 0.48 8.40 8.99 -323.11 -2.90 5.50 16 5 N -0.57 -9.76 11.27 -14.86 -0.17 -9.93 16 6 C 0.51 7.59 9.38 -321.79 -3.02 4.57 16 7 N -0.81 -7.62 9.11 29.91 0.27 -7.35 16 8 N -0.39 -6.05 12.69 29.90 0.38 -5.67 16 9 N -0.32 -5.09 3.89 -10.10 -0.04 -5.13 16 10 C 0.22 3.06 6.85 -81.66 -0.56 2.50 16 11 C -0.12 -1.28 9.71 36.01 0.35 -0.93 16 12 C -0.17 -2.27 4.36 -104.83 -0.46 -2.72 16 13 C -0.09 -1.02 3.32 -29.03 -0.10 -1.12 16 14 C 0.50 8.58 7.32 -10.99 -0.08 8.50 16 15 O -0.55 -11.76 15.36 5.56 0.09 -11.68 16 16 N -0.58 -10.53 2.75 -175.26 -0.48 -11.01 16 17 C 0.08 1.08 9.10 59.85 0.54 1.63 16 18 C 0.24 5.29 2.23 -69.09 -0.15 5.14 16 19 H 0.05 1.35 5.48 -51.93 -0.28 1.07 16 20 C -0.16 -3.15 9.01 37.16 0.33 -2.82 16 21 C -0.62 -15.93 8.30 -34.45 -0.29 -16.22 16 22 H 0.06 1.71 7.37 -52.48 -0.39 1.32 16 23 C 0.05 1.23 5.20 -17.82 -0.09 1.14 16 24 N -0.89 -25.74 13.70 55.43 0.76 -24.98 16 25 Si 1.03 24.63 26.44 -169.99 -4.49 20.14 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.13 6.12 56.52 0.35 -5.78 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.08 6.45 -51.93 -0.34 0.74 16 32 H 0.42 3.05 8.96 -40.82 -0.37 2.69 16 33 H 0.42 2.81 8.96 -40.82 -0.37 2.44 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.73 5.97 -51.93 -0.31 0.42 16 37 H 0.11 0.99 6.02 -51.93 -0.31 0.68 16 38 H 0.11 0.88 5.93 -51.93 -0.31 0.57 16 39 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.06 0.57 6.44 -51.93 -0.33 0.24 16 41 H 0.08 1.33 6.91 -51.93 -0.36 0.97 16 42 H 0.06 1.34 5.44 -51.93 -0.28 1.06 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.88 7.46 -51.93 -0.39 0.50 16 45 H 0.27 7.66 8.73 -40.82 -0.36 7.30 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -36.29 364.93 -10.71 -47.00 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.78 Total: 3.73 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -6.64 Total: 7.36 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: 0.62 Total: -72.06 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.49 Total: 20.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.29 -10.71 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331000964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.366 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds