Wall clock time and date at job start Tue Mar 31 2020 17:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31414 * 119.85510 * 2 1 4 4 C 1.33794 * 120.86848 * 180.02562 * 3 2 1 5 5 N 1.32894 * 132.36489 * 179.97438 * 4 3 2 6 6 C 1.33083 * 109.71028 * 180.02562 * 5 4 3 7 7 N 1.39231 * 125.27809 * 180.02562 * 6 5 4 8 8 N 1.31744 * 109.43924 * 0.02562 * 6 5 4 9 9 N 1.36644 * 120.28514 * 0.02562 * 4 3 2 10 10 C 1.35854 * 120.28174 * 359.71699 * 9 4 3 11 11 C 1.50700 * 120.47947 * 180.30049 * 10 9 4 12 12 C 1.35871 * 119.04242 * 0.55068 * 10 9 4 13 13 C 1.50697 * 120.38396 * 179.73182 * 12 10 9 14 14 C 1.50704 * 109.47033 * 269.72480 * 13 12 10 15 15 O 1.21276 * 119.99791 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00250 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99674 * 0.02562 * 16 14 13 18 18 C 1.46503 * 120.00310 * 179.97438 * 16 14 13 19 19 H 1.08999 * 109.46849 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.46749 * 119.99959 * 18 16 14 21 21 C 1.50692 * 109.47272 * 240.00000 * 18 16 14 22 22 H 1.08003 * 120.00316 * 354.37084 * 21 18 16 23 23 C 1.37875 * 120.00133 * 174.37226 * 21 18 16 24 24 N 1.31516 * 120.00510 * 156.90156 * 23 21 18 25 25 Si 1.86810 * 119.99756 * 337.17312 * 23 21 18 26 26 H 1.48501 * 109.47061 * 179.72434 * 25 23 21 27 27 H 1.48495 * 109.46894 * 299.72787 * 25 23 21 28 28 H 1.48496 * 109.46696 * 59.72479 * 25 23 21 29 29 H 1.09006 * 109.47459 * 269.97997 * 1 2 3 30 30 H 1.08998 * 109.47196 * 29.98158 * 1 2 3 31 31 H 1.08997 * 109.47103 * 149.97972 * 1 2 3 32 32 H 0.97001 * 119.99896 * 359.97438 * 7 6 5 33 33 H 0.96995 * 119.99783 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46986 * 270.25620 * 11 10 9 35 35 H 1.09006 * 109.46841 * 30.25326 * 11 10 9 36 36 H 1.08993 * 109.47083 * 150.25271 * 11 10 9 37 37 H 1.08998 * 109.47134 * 149.72432 * 13 12 10 38 38 H 1.09003 * 109.47160 * 29.72157 * 13 12 10 39 39 H 1.09007 * 109.46817 * 269.99788 * 17 16 14 40 40 H 1.08992 * 109.47593 * 29.99650 * 17 16 14 41 41 H 1.08998 * 109.47142 * 150.00162 * 17 16 14 42 42 H 1.09002 * 109.47176 * 173.30506 * 20 18 16 43 43 H 1.09005 * 109.47375 * 293.30343 * 20 18 16 44 44 H 1.09000 * 109.47483 * 53.30246 * 20 18 16 45 45 H 0.96989 * 119.99527 * 355.20009 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1612 1.1397 0.0000 4 6 3.4989 1.1634 -0.0005 5 7 4.3769 2.1610 -0.0011 6 6 5.6139 1.6702 -0.0020 7 7 6.7806 2.4301 -0.0023 8 7 5.5633 0.3537 -0.0026 9 7 4.2088 -0.0042 -0.0016 10 6 3.5622 -1.1990 0.0037 11 6 4.3407 -2.4894 0.0093 12 6 2.2036 -1.2138 -0.0014 13 6 1.4556 -2.5220 -0.0019 14 6 1.2057 -2.9573 -1.4230 15 8 1.5962 -2.2723 -2.3445 16 7 0.5475 -4.1071 -1.6697 17 6 0.0744 -4.9337 -0.5565 18 6 0.3041 -4.5300 -3.0511 19 1 0.7251 -3.7938 -3.7359 20 6 0.9661 -5.8879 -3.2929 21 6 -1.1798 -4.6453 -3.2871 22 1 -1.8690 -4.5148 -2.4659 23 6 -1.6577 -4.9176 -4.5514 24 7 -2.8469 -5.4585 -4.7026 25 14 -0.6128 -4.5252 -6.0494 26 1 -1.3456 -4.9164 -7.2803 27 1 -0.3267 -3.0685 -6.0854 28 1 0.6645 -5.2788 -5.9731 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 6.7284 3.3988 -0.0021 33 1 7.6454 1.9910 -0.0026 34 1 4.5323 -2.8026 -1.0169 35 1 5.2885 -2.3396 0.5265 36 1 3.7644 -3.2591 0.5226 37 1 0.5029 -2.3960 0.5123 38 1 2.0481 -3.2795 0.5112 39 1 0.8490 -5.6493 -0.2805 40 1 -0.1528 -4.2967 0.2982 41 1 -0.8248 -5.4703 -0.8589 42 1 0.6868 -6.2578 -4.2794 43 1 2.0493 -5.7789 -3.2391 44 1 0.6339 -6.5947 -2.5324 45 1 -3.3586 -5.7299 -3.9247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331000964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:30 Heat of formation + Delta-G solvation = 84.423411 kcal Electronic energy + Delta-G solvation = -29101.330863 eV Core-core repulsion = 25155.860895 eV Total energy + Delta-G solvation = -3945.469969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.99198 -41.24453 -40.01435 -37.22302 -36.63014 -35.82873 -34.82843 -33.59499 -32.58495 -32.03604 -29.95401 -29.66888 -27.85991 -27.48506 -26.72638 -24.42903 -23.39026 -22.56995 -22.18946 -20.08174 -19.81230 -19.47375 -19.12484 -18.20776 -17.70846 -17.40962 -16.90993 -16.68471 -16.48486 -15.76568 -15.62011 -15.12768 -15.00315 -14.79251 -14.70386 -14.40905 -14.24867 -14.02263 -13.77618 -13.63172 -13.41172 -13.37560 -13.32233 -13.21625 -13.08521 -12.84614 -12.70240 -12.52531 -12.41033 -11.90481 -11.71262 -11.35817 -11.28907 -11.18405 -11.04211 -10.67491 -10.41343 -9.85650 -9.48192 -9.41611 -8.65861 -6.31602 -0.61196 -0.38649 0.73584 1.43237 1.50744 1.55300 1.68443 1.79480 1.82529 2.19009 2.44013 2.45944 2.53219 3.02023 3.05766 3.17141 3.50124 3.70450 3.85236 3.90721 4.18722 4.34518 4.41758 4.50952 4.55942 4.59296 4.65264 4.66877 4.72691 4.73920 4.77299 4.79012 4.91612 4.96065 5.04659 5.11062 5.16816 5.20974 5.23849 5.44498 5.77158 5.89081 6.11399 6.12487 6.21837 6.44787 6.64144 6.80664 7.15797 7.32958 7.45870 8.65255 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.003127 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.507876 B = 8951.832414 C = 9048.272051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.252 3.748 3 N -0.503 5.503 4 C 0.455 3.545 5 N -0.596 5.596 6 C 0.505 3.495 7 N -0.792 5.792 8 N -0.402 5.402 9 N -0.324 5.324 10 C 0.209 3.791 11 C -0.119 4.119 12 C -0.173 4.173 13 C -0.076 4.076 14 C 0.501 3.499 15 O -0.598 6.598 16 N -0.592 5.592 17 C 0.073 3.927 18 C 0.235 3.765 19 H 0.025 0.975 20 C -0.147 4.147 21 C -0.606 4.606 22 H 0.043 0.957 23 C 0.001 3.999 24 N -0.927 5.927 25 Si 1.058 2.942 26 H -0.285 1.285 27 H -0.287 1.287 28 H -0.248 1.248 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.427 0.573 33 H 0.429 0.571 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.367 4.469 16.925 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.222 5.222 4 C 0.094 3.906 5 N -0.338 5.338 6 C 0.134 3.866 7 N -0.350 5.350 8 N -0.246 5.246 9 N -0.102 5.102 10 C 0.090 3.910 11 C -0.175 4.175 12 C -0.181 4.181 13 C -0.116 4.116 14 C 0.290 3.710 15 O -0.480 6.480 16 N -0.323 5.323 17 C -0.069 4.069 18 C 0.132 3.868 19 H 0.043 0.957 20 C -0.206 4.206 21 C -0.644 4.644 22 H 0.061 0.939 23 C -0.200 4.200 24 N -0.562 5.562 25 Si 0.883 3.117 26 H -0.211 1.211 27 H -0.213 1.213 28 H -0.172 1.172 29 H 0.152 0.848 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.261 0.739 33 H 0.263 0.737 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.907 5.687 14.800 21.762 hybrid contribution 0.062 -0.180 1.057 1.074 sum 14.970 5.508 15.857 22.491 Atomic orbital electron populations 1.21089 0.84311 1.05104 1.06345 1.22395 0.99220 0.86043 0.83253 1.67864 1.01673 1.29911 1.22737 1.22605 0.90565 0.82119 0.95285 1.70456 0.98178 1.27621 1.37574 1.20699 0.88049 0.87331 0.90476 1.40960 1.01526 1.08653 1.83883 1.78512 0.89531 1.11624 1.44974 1.48354 1.06960 1.07708 1.47143 1.21108 0.92007 0.86996 0.90923 1.21213 1.00986 0.90220 1.05080 1.19781 0.90901 0.97748 1.09714 1.20724 1.04150 0.92962 0.93774 1.21040 0.77699 0.80420 0.91848 1.90686 1.54077 1.54916 1.48308 1.47981 1.54137 1.22002 1.08136 1.21974 1.00447 0.96062 0.88394 1.18845 0.94472 0.92682 0.80824 0.95684 1.22262 0.98491 0.98342 1.01486 1.22268 0.92208 1.53493 0.96457 0.93894 1.26495 0.97811 0.92611 1.03109 1.70952 1.14562 1.36975 1.33701 0.83845 0.76084 0.77394 0.74419 1.21083 1.21307 1.17248 0.84799 0.89572 0.89256 0.73918 0.73735 0.89239 0.88827 0.84955 0.83419 0.83109 0.90376 0.88048 0.92564 0.93640 0.93493 0.91920 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.41 71.24 0.67 -1.55 16 2 C 0.25 6.78 6.83 43.04 0.29 7.08 16 3 N -0.50 -16.76 10.40 -185.71 -1.93 -18.69 16 4 C 0.46 16.13 8.99 261.59 2.35 18.48 16 5 N -0.60 -20.81 11.27 -200.94 -2.27 -23.07 16 6 C 0.51 14.78 9.38 261.13 2.45 17.23 16 7 N -0.79 -14.03 9.11 -59.29 -0.54 -14.57 16 8 N -0.40 -12.33 12.69 -59.31 -0.75 -13.08 16 9 N -0.32 -10.27 3.89 -185.88 -0.72 -10.99 16 10 C 0.21 5.42 6.85 41.39 0.28 5.70 16 11 C -0.12 -2.12 9.71 71.24 0.69 -1.43 16 12 C -0.17 -4.20 4.36 -20.00 -0.09 -4.28 16 13 C -0.08 -1.38 3.32 29.10 0.10 -1.29 16 14 C 0.50 15.72 7.32 87.66 0.64 16.36 16 15 O -0.60 -25.33 15.36 -3.02 -0.05 -25.38 16 16 N -0.59 -19.72 2.75 -826.81 -2.28 -21.99 16 17 C 0.07 1.68 9.10 127.77 1.16 2.84 16 18 C 0.24 10.28 2.23 44.24 0.10 10.38 16 19 H 0.03 1.26 5.48 -2.39 -0.01 1.25 16 20 C -0.15 -5.65 9.01 71.98 0.65 -5.01 16 21 C -0.61 -31.27 8.30 25.60 0.21 -31.05 16 22 H 0.04 2.35 7.37 -2.91 -0.02 2.32 16 23 C 0.00 0.08 5.20 84.65 0.44 0.52 16 24 N -0.93 -54.55 13.70 21.45 0.29 -54.26 16 25 Si 1.06 50.15 26.44 68.60 1.81 51.96 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.25 -10.54 6.12 99.48 0.61 -9.93 16 29 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.86 6.45 -2.39 -0.02 1.85 16 32 H 0.43 5.81 8.96 -92.71 -0.83 4.98 16 33 H 0.43 5.19 8.96 -92.71 -0.83 4.36 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.13 1.30 5.97 -2.39 -0.01 1.29 16 37 H 0.15 1.73 6.02 -2.39 -0.01 1.71 16 38 H 0.15 1.46 5.93 -2.39 -0.01 1.44 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.10 1.42 6.44 -2.39 -0.02 1.41 16 41 H 0.06 1.64 6.91 -2.39 -0.02 1.62 16 42 H 0.04 1.87 5.44 -2.39 -0.01 1.86 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 2.17 7.46 -2.39 -0.02 2.16 16 45 H 0.26 15.24 8.73 -92.72 -0.81 14.43 16 Total: -1.00 -84.36 364.93 2.81 -81.55 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.72 Total: 14.54 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: 9.95 Total: 33.98 kcal Atomic # 7 Polarization: -148.46 SS G_CDS: -8.20 Total: -156.66 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.81 Total: 51.96 kcal Total: -84.36 2.81 -81.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331000964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.975 kcal (2) G-P(sol) polarization free energy of solvation -84.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds