Wall clock time and date at job start Tue Mar 31 2020 17:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35248 * 126.06793 * 2 1 4 4 C 1.40407 * 107.86533 * 180.15653 * 3 2 1 5 5 N 1.40194 * 125.96688 * 179.82820 * 4 3 2 6 6 C 1.34770 * 120.00321 * 359.71399 * 5 4 3 7 7 O 1.21591 * 120.00164 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00153 * 0.02562 * 8 6 5 10 10 C 1.46505 * 119.99702 * 180.02562 * 8 6 5 11 11 C 1.50696 * 109.47088 * 269.99419 * 10 8 6 12 12 C 1.35325 * 126.12378 * 95.02864 * 11 10 8 13 13 C 1.39868 * 107.91737 * 180.24396 * 12 11 10 14 14 N 1.30842 * 108.20327 * 359.55203 * 13 12 11 15 15 N 1.34941 * 126.13067 * 275.00730 * 11 10 8 16 16 C 1.46498 * 126.04014 * 359.97438 * 15 11 10 17 17 N 1.31205 * 108.05627 * 359.56446 * 4 3 2 18 18 N 1.34965 * 126.07432 * 179.67485 * 2 1 3 19 19 C 1.46499 * 125.97474 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46685 * 269.99559 * 19 18 2 21 21 H 1.08003 * 120.00401 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99993 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99574 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47012 * 59.99576 * 24 22 20 26 26 H 1.48492 * 109.46932 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46654 * 299.99975 * 24 22 20 28 28 H 1.08999 * 109.47249 * 270.32160 * 1 2 3 29 29 H 1.08996 * 109.47597 * 30.32100 * 1 2 3 30 30 H 1.09010 * 109.47062 * 150.32401 * 1 2 3 31 31 H 1.08001 * 126.07018 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99494 * 179.72307 * 5 4 3 33 33 H 1.09000 * 109.46852 * 270.00087 * 9 8 6 34 34 H 1.08998 * 109.47125 * 29.99533 * 9 8 6 35 35 H 1.08994 * 109.47217 * 150.00504 * 9 8 6 36 36 H 1.08998 * 109.46517 * 149.99851 * 10 8 6 37 37 H 1.08995 * 109.47268 * 30.00034 * 10 8 6 38 38 H 1.08002 * 126.03725 * 359.97438 * 12 11 10 39 39 H 1.08007 * 125.89524 * 179.73435 * 13 12 11 40 40 H 1.08994 * 109.47427 * 90.00207 * 16 15 11 41 41 H 1.08999 * 109.47247 * 210.00793 * 16 15 11 42 42 H 1.09007 * 109.46720 * 330.00755 * 16 15 11 43 43 H 1.08997 * 109.47069 * 29.99416 * 19 18 2 44 44 H 1.08996 * 109.47422 * 149.99917 * 19 18 2 45 45 H 0.97003 * 119.99378 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0037 5 7 4.7736 1.4753 -0.0082 6 6 4.6368 2.8160 -0.0153 7 8 3.5275 3.3139 -0.0182 8 7 5.7296 3.6050 -0.0202 9 6 7.0661 3.0051 -0.0185 10 6 5.5808 5.0624 -0.0273 11 6 5.5286 5.5551 -1.4505 12 6 4.4086 5.7953 -2.1710 13 6 4.7993 6.2326 -3.4409 14 7 6.1069 6.2632 -3.4782 15 7 6.5902 5.8361 -2.2347 16 6 7.9995 5.7167 -1.8528 17 7 3.6337 -0.6574 0.0037 18 7 2.3017 -1.0908 0.0062 19 6 1.8502 -2.4845 0.0146 20 6 1.6960 -2.9539 1.4384 21 1 1.9131 -2.2815 2.2552 22 6 1.2788 -4.2421 1.6982 23 7 1.0150 -5.0610 0.7036 24 14 1.0884 -4.8242 3.4630 25 1 0.0878 -3.9757 4.1588 26 1 0.6306 -6.2367 3.4716 27 1 2.3950 -4.7224 4.1614 28 1 -0.3634 0.0058 1.0276 29 1 -0.3634 0.8870 -0.5188 30 1 -0.3634 -0.8930 -0.5088 31 1 1.9720 2.1212 -0.0004 32 1 5.6586 1.0781 -0.0065 33 1 7.3985 2.8614 1.0096 34 1 7.0327 2.0418 -0.5274 35 1 7.7615 3.6657 -0.5362 36 1 6.4298 5.5167 0.4835 37 1 4.6591 5.3360 0.4860 38 1 3.3926 5.6674 -1.8277 39 1 4.1362 6.5015 -4.2498 40 1 8.3579 4.7160 -2.0941 41 1 8.5876 6.4547 -2.3983 42 1 8.1016 5.8905 -0.7815 43 1 0.8913 -2.5589 -0.4983 44 1 2.5846 -3.1075 -0.4958 45 1 0.7211 -5.9672 0.8864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346963427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:01 Heat of formation + Delta-G solvation = 147.416920 kcal Electronic energy + Delta-G solvation = -28084.338952 eV Core-core repulsion = 24141.600587 eV Total energy + Delta-G solvation = -3942.738365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51789 -40.76577 -39.71904 -36.04390 -34.91512 -33.52107 -33.32671 -31.74412 -31.08688 -30.63502 -27.72239 -26.97434 -26.85363 -26.33523 -25.79968 -23.02806 -21.44164 -21.31626 -20.02887 -19.76892 -19.15937 -17.69474 -17.11169 -16.74267 -16.67251 -15.96067 -15.57316 -15.36706 -14.80810 -14.60608 -14.40273 -14.29917 -14.02508 -13.96138 -13.54145 -13.27477 -13.05294 -12.95426 -12.79749 -12.48474 -12.45310 -12.26713 -12.18186 -12.08055 -11.63448 -11.37535 -11.10290 -10.82214 -10.80677 -10.46231 -10.24413 -10.03542 -9.69925 -9.53765 -9.50396 -9.08231 -8.68689 -8.63139 -7.90272 -7.39538 -6.24411 -4.31983 1.49065 2.27082 2.32570 2.63680 2.76970 3.07528 3.23594 3.27391 3.30983 3.42015 3.81900 4.07180 4.24376 4.31283 4.33405 4.53224 4.58843 4.73821 4.90370 4.96555 5.05861 5.09176 5.22993 5.29717 5.41121 5.52223 5.62955 5.72442 5.92214 5.96389 6.04825 6.14308 6.25989 6.47798 6.50557 6.55257 6.62418 6.78115 6.91682 7.02089 7.08863 7.50839 7.52128 7.68079 7.84347 7.90543 8.08625 8.52046 8.68291 8.76723 9.34099 10.82763 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002376 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.072681 B =11782.946305 C =12274.552151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.287 4.287 4 C 0.281 3.719 5 N -0.642 5.642 6 C 0.717 3.283 7 O -0.555 6.555 8 N -0.628 5.628 9 C 0.070 3.930 10 C 0.200 3.800 11 C 0.058 3.942 12 C -0.239 4.239 13 C 0.043 3.957 14 N -0.298 5.298 15 N -0.371 5.371 16 C 0.098 3.902 17 N -0.324 5.324 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.405 0.595 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.152 0.848 39 H 0.183 0.817 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 21.300 -3.026 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.319 4.319 4 C 0.027 3.973 5 N -0.293 5.293 6 C 0.418 3.582 7 O -0.430 6.430 8 N -0.367 5.367 9 C -0.073 4.073 10 C 0.075 3.925 11 C -0.070 4.070 12 C -0.269 4.269 13 C -0.142 4.142 14 N -0.119 5.119 15 N -0.155 5.155 16 C -0.044 4.044 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.170 0.830 39 H 0.200 0.800 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.715 20.530 -3.729 24.435 hybrid contribution -0.531 -0.300 1.303 1.439 sum 12.184 20.230 -2.426 23.740 Atomic orbital electron populations 1.20328 0.87918 1.02805 1.03131 1.21059 0.94883 0.87157 1.00926 1.21225 0.89613 0.99817 1.21202 1.18669 0.86559 0.89278 1.02778 1.41529 1.07686 1.03693 1.76382 1.15510 0.84277 0.80518 0.77910 1.90868 1.22954 1.73235 1.55897 1.46946 1.05208 1.05360 1.79171 1.21921 0.83762 0.99280 1.02351 1.19767 1.05088 0.78346 0.89281 1.21518 0.87957 1.01690 0.95807 1.21440 0.99390 1.11604 0.94510 1.23881 0.92363 0.99777 0.98203 1.77338 1.12168 1.22071 1.00364 1.48430 1.05839 1.51636 1.09637 1.21889 0.77725 1.03431 1.01340 1.77240 1.00001 1.08311 1.29937 1.48959 1.00868 1.07756 1.52472 1.19666 0.95936 0.71375 0.98861 1.21287 1.46805 0.97936 0.91370 0.91821 1.24927 0.94704 0.96048 0.98110 1.69912 1.44905 1.06984 1.31215 0.86415 0.78785 0.77654 0.83827 1.19924 1.20971 1.20023 0.90455 0.90806 0.90915 0.82179 0.75858 0.91722 0.91080 0.91004 0.89309 0.86633 0.82996 0.80004 0.90785 0.89212 0.89635 0.92807 0.93086 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.07 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.95 9.52 -39.83 -0.38 -6.33 16 4 C 0.28 5.76 8.11 -154.36 -1.25 4.51 16 5 N -0.64 -10.16 5.32 -15.51 -0.08 -10.24 16 6 C 0.72 10.53 8.25 -86.92 -0.72 9.82 16 7 O -0.56 -9.69 13.05 5.29 0.07 -9.62 16 8 N -0.63 -6.30 2.86 -188.75 -0.54 -6.84 16 9 C 0.07 0.45 10.20 59.84 0.61 1.06 16 10 C 0.20 1.70 5.58 -5.19 -0.03 1.67 16 11 C 0.06 0.60 6.51 -82.27 -0.54 0.07 16 12 C -0.24 -2.78 10.72 -40.01 -0.43 -3.21 16 13 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 14 N -0.30 -3.61 12.58 30.63 0.39 -3.22 16 15 N -0.37 -3.68 4.01 -63.89 -0.26 -3.93 16 16 C 0.10 0.53 9.97 59.85 0.60 1.12 16 17 N -0.32 -7.53 12.59 31.44 0.40 -7.13 16 18 N -0.32 -7.60 3.59 -58.33 -0.21 -7.80 16 19 C 0.26 6.68 5.99 -5.19 -0.03 6.65 16 20 C -0.54 -14.77 9.39 -34.44 -0.32 -15.10 16 21 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 24 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.26 7.07 -51.92 -0.37 0.89 16 31 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 32 H 0.40 5.26 6.56 -40.82 -0.27 4.99 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 35 H 0.07 0.31 5.39 -51.93 -0.28 0.03 16 36 H 0.09 0.45 7.17 -51.93 -0.37 0.07 16 37 H 0.12 1.08 7.42 -51.93 -0.39 0.70 16 38 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.07 0.34 7.15 -51.93 -0.37 -0.03 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.24 7.05 -51.92 -0.37 -0.13 16 43 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 44 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -35.51 376.95 -7.76 -43.27 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.92 Total: 5.64 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.00 Total: 2.50 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.43 Total: -63.54 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.51 -7.76 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346963427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.686 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds