Wall clock time and date at job start Tue Mar 31 2020 17:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35248 * 126.06793 * 2 1 4 4 C 1.40407 * 107.86533 * 180.15653 * 3 2 1 5 5 N 1.40194 * 125.96688 * 179.82820 * 4 3 2 6 6 C 1.34770 * 120.00321 * 359.71399 * 5 4 3 7 7 O 1.21591 * 120.00164 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00153 * 0.02562 * 8 6 5 10 10 C 1.46505 * 119.99702 * 180.02562 * 8 6 5 11 11 C 1.50696 * 109.47088 * 269.99419 * 10 8 6 12 12 C 1.35325 * 126.12378 * 95.02864 * 11 10 8 13 13 C 1.39868 * 107.91737 * 180.24396 * 12 11 10 14 14 N 1.30842 * 108.20327 * 359.55203 * 13 12 11 15 15 N 1.34941 * 126.13067 * 275.00730 * 11 10 8 16 16 C 1.46498 * 126.04014 * 359.97438 * 15 11 10 17 17 N 1.31205 * 108.05627 * 359.56446 * 4 3 2 18 18 N 1.34965 * 126.07432 * 179.67485 * 2 1 3 19 19 C 1.46499 * 125.97474 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46685 * 269.99559 * 19 18 2 21 21 H 1.08003 * 120.00401 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99993 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99574 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47012 * 59.99576 * 24 22 20 26 26 H 1.48492 * 109.46932 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46654 * 299.99975 * 24 22 20 28 28 H 1.08999 * 109.47249 * 270.32160 * 1 2 3 29 29 H 1.08996 * 109.47597 * 30.32100 * 1 2 3 30 30 H 1.09010 * 109.47062 * 150.32401 * 1 2 3 31 31 H 1.08001 * 126.07018 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99494 * 179.72307 * 5 4 3 33 33 H 1.09000 * 109.46852 * 270.00087 * 9 8 6 34 34 H 1.08998 * 109.47125 * 29.99533 * 9 8 6 35 35 H 1.08994 * 109.47217 * 150.00504 * 9 8 6 36 36 H 1.08998 * 109.46517 * 149.99851 * 10 8 6 37 37 H 1.08995 * 109.47268 * 30.00034 * 10 8 6 38 38 H 1.08002 * 126.03725 * 359.97438 * 12 11 10 39 39 H 1.08007 * 125.89524 * 179.73435 * 13 12 11 40 40 H 1.08994 * 109.47427 * 90.00207 * 16 15 11 41 41 H 1.08999 * 109.47247 * 210.00793 * 16 15 11 42 42 H 1.09007 * 109.46720 * 330.00755 * 16 15 11 43 43 H 1.08997 * 109.47069 * 29.99416 * 19 18 2 44 44 H 1.08996 * 109.47422 * 149.99917 * 19 18 2 45 45 H 0.97003 * 119.99378 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0037 5 7 4.7736 1.4753 -0.0082 6 6 4.6368 2.8160 -0.0153 7 8 3.5275 3.3139 -0.0182 8 7 5.7296 3.6050 -0.0202 9 6 7.0661 3.0051 -0.0185 10 6 5.5808 5.0624 -0.0273 11 6 5.5286 5.5551 -1.4505 12 6 4.4086 5.7953 -2.1710 13 6 4.7993 6.2326 -3.4409 14 7 6.1069 6.2632 -3.4782 15 7 6.5902 5.8361 -2.2347 16 6 7.9995 5.7167 -1.8528 17 7 3.6337 -0.6574 0.0037 18 7 2.3017 -1.0908 0.0062 19 6 1.8502 -2.4845 0.0146 20 6 1.6960 -2.9539 1.4384 21 1 1.9131 -2.2815 2.2552 22 6 1.2788 -4.2421 1.6982 23 7 1.0150 -5.0610 0.7036 24 14 1.0884 -4.8242 3.4630 25 1 0.0878 -3.9757 4.1588 26 1 0.6306 -6.2367 3.4716 27 1 2.3950 -4.7224 4.1614 28 1 -0.3634 0.0058 1.0276 29 1 -0.3634 0.8870 -0.5188 30 1 -0.3634 -0.8930 -0.5088 31 1 1.9720 2.1212 -0.0004 32 1 5.6586 1.0781 -0.0065 33 1 7.3985 2.8614 1.0096 34 1 7.0327 2.0418 -0.5274 35 1 7.7615 3.6657 -0.5362 36 1 6.4298 5.5167 0.4835 37 1 4.6591 5.3360 0.4860 38 1 3.3926 5.6674 -1.8277 39 1 4.1362 6.5015 -4.2498 40 1 8.3579 4.7160 -2.0941 41 1 8.5876 6.4547 -2.3983 42 1 8.1016 5.8905 -0.7815 43 1 0.8913 -2.5589 -0.4983 44 1 2.5846 -3.1075 -0.4958 45 1 0.7211 -5.9672 0.8864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346963427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:00 Heat of formation + Delta-G solvation = 124.251665 kcal Electronic energy + Delta-G solvation = -28085.343473 eV Core-core repulsion = 24141.600587 eV Total energy + Delta-G solvation = -3943.742886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43769 -42.13911 -40.96706 -37.02015 -36.32525 -35.31415 -34.13494 -33.13307 -32.61686 -31.88954 -28.68057 -28.39067 -27.85652 -27.46153 -26.91794 -24.89019 -22.73238 -22.09974 -21.26431 -21.04730 -20.29405 -18.90619 -18.71377 -18.00993 -17.73562 -17.33004 -16.84517 -16.49957 -16.22899 -15.90581 -15.69026 -15.26304 -15.17818 -14.77175 -14.63564 -14.46292 -14.21972 -13.90639 -13.78897 -13.67273 -13.62533 -13.48180 -13.34003 -13.11932 -13.00318 -12.84526 -12.71972 -12.64537 -12.22689 -12.11150 -11.62922 -11.55913 -11.34830 -11.09794 -10.72214 -10.31404 -9.94451 -9.54804 -9.48608 -9.05939 -8.31195 -6.49137 0.65149 1.04380 1.21844 1.39194 1.40692 1.49757 1.61113 1.70347 1.82788 2.11400 2.35967 2.38600 2.86551 2.98229 3.62108 3.69995 3.83547 3.96583 4.08119 4.17556 4.33575 4.38318 4.44461 4.47968 4.64614 4.67138 4.73671 4.73737 4.79600 4.82354 4.86392 4.91061 4.98157 5.03334 5.15521 5.16600 5.23479 5.46226 5.54906 5.68639 5.70539 5.82547 5.98461 6.10613 6.28848 6.57225 6.64477 6.71714 7.09421 7.21671 7.36918 8.74334 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002376 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.072681 B =11782.946305 C =12274.552151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.295 4.295 4 C 0.291 3.709 5 N -0.636 5.636 6 C 0.711 3.289 7 O -0.587 6.587 8 N -0.616 5.616 9 C 0.060 3.940 10 C 0.200 3.800 11 C 0.062 3.938 12 C -0.269 4.269 13 C 0.034 3.966 14 N -0.328 5.328 15 N -0.368 5.368 16 C 0.083 3.917 17 N -0.361 5.361 18 N -0.344 5.344 19 C 0.276 3.724 20 C -0.552 4.552 21 H 0.050 0.950 22 C 0.022 3.978 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.273 1.273 27 H -0.275 1.275 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.168 0.832 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.200 0.800 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.051 0.949 44 H 0.023 0.977 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.175 22.509 -1.632 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.326 4.326 4 C 0.036 3.964 5 N -0.289 5.289 6 C 0.412 3.588 7 O -0.464 6.464 8 N -0.353 5.353 9 C -0.081 4.081 10 C 0.075 3.925 11 C -0.067 4.067 12 C -0.300 4.300 13 C -0.150 4.150 14 N -0.150 5.150 15 N -0.151 5.151 16 C -0.057 4.057 17 N -0.192 5.192 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.198 1.198 27 H -0.200 1.200 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.257 0.743 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.159 0.841 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.250 21.782 -2.350 26.135 hybrid contribution -0.867 -0.542 0.825 1.314 sum 13.383 21.240 -1.524 25.151 Atomic orbital electron populations 1.20461 0.85416 1.04133 1.03934 1.21734 0.96614 0.86463 0.99539 1.21402 0.89839 0.99891 1.21456 1.18965 0.88120 0.88920 1.00404 1.41558 1.07013 1.03941 1.76422 1.15763 0.85146 0.80175 0.77718 1.90837 1.24722 1.73593 1.57209 1.46982 1.05286 1.05588 1.77401 1.22251 0.82046 0.99590 1.04249 1.20013 1.06749 0.77301 0.88405 1.21718 0.87807 1.00833 0.96372 1.21562 0.99678 1.13362 0.95371 1.24215 0.92554 0.99578 0.98695 1.77275 1.12530 1.23290 1.01945 1.48762 1.07273 1.50382 1.08708 1.22337 0.75356 1.04413 1.03579 1.77155 1.00086 1.09761 1.32180 1.48754 1.01669 1.07479 1.54747 1.19224 0.94838 0.72451 0.97776 1.21411 1.47547 0.98359 0.91749 0.93176 1.25741 0.93956 0.95883 1.02286 1.70000 1.45070 1.07400 1.33225 0.85411 0.78768 0.77651 0.78700 1.18992 1.19801 1.20012 0.89792 0.87617 0.91373 0.81494 0.74322 0.89485 0.91516 0.88220 0.84707 0.87683 0.84060 0.78347 0.89639 0.88613 0.86308 0.93093 0.95879 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.77 10.11 71.23 0.72 -2.04 16 2 C 0.09 3.71 6.92 41.39 0.29 4.00 16 3 C -0.29 -12.24 9.52 22.11 0.21 -12.03 16 4 C 0.29 12.00 8.11 133.32 1.08 13.08 16 5 N -0.64 -19.66 5.32 -321.23 -1.71 -21.37 16 6 C 0.71 20.06 8.25 179.05 1.48 21.53 16 7 O -0.59 -20.27 13.05 -4.00 -0.05 -20.32 16 8 N -0.62 -10.77 2.86 -869.33 -2.48 -13.26 16 9 C 0.06 0.56 10.20 127.77 1.30 1.86 16 10 C 0.20 2.84 5.58 85.63 0.48 3.32 16 11 C 0.06 1.18 6.51 41.41 0.27 1.45 16 12 C -0.27 -6.25 10.72 21.99 0.24 -6.01 16 13 C 0.03 0.75 12.03 85.23 1.02 1.78 16 14 N -0.33 -7.67 12.58 -57.02 -0.72 -8.38 16 15 N -0.37 -6.49 4.01 -356.04 -1.43 -7.91 16 16 C 0.08 0.60 9.97 127.77 1.27 1.87 16 17 N -0.36 -17.15 12.59 -54.43 -0.69 -17.83 16 18 N -0.34 -16.87 3.59 -338.46 -1.22 -18.09 16 19 C 0.28 14.74 5.99 85.63 0.51 15.26 16 20 C -0.55 -31.10 9.39 25.60 0.24 -30.86 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.22 5.46 84.66 0.46 1.68 16 23 N -0.92 -52.11 13.29 21.45 0.28 -51.82 16 24 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.37 7.07 -2.38 -0.02 2.35 16 31 H 0.17 6.71 5.91 -2.91 -0.02 6.69 16 32 H 0.42 10.38 6.56 -92.70 -0.61 9.77 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.72 6.36 -2.39 -0.02 0.70 16 35 H 0.10 0.39 5.39 -2.39 -0.01 0.37 16 36 H 0.14 0.70 7.17 -2.39 -0.02 0.68 16 37 H 0.10 1.80 7.42 -2.39 -0.02 1.78 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.09 0.46 7.15 -2.39 -0.02 0.44 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 0.05 7.05 -2.38 -0.02 0.03 16 43 H 0.05 2.70 7.04 -2.39 -0.02 2.68 16 44 H 0.02 1.33 8.14 -2.39 -0.02 1.32 16 45 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -79.14 376.95 4.02 -75.12 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.43 Total: 23.95 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 9.58 Total: 14.88 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -7.95 Total: -138.66 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.14 4.02 -75.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346963427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.367 kcal (2) G-P(sol) polarization free energy of solvation -79.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds