Wall clock time and date at job start Tue Mar 31 2020 17:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46506 * 119.99880 * 0.26799 * 8 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 11 11 C 1.50697 * 109.47340 * 89.99486 * 10 8 6 12 12 C 1.39873 * 126.04152 * 90.02510 * 11 10 8 13 13 N 1.30835 * 108.20355 * 179.97438 * 12 11 10 14 14 N 1.40084 * 108.20428 * 0.02562 * 13 12 11 15 15 C 1.46507 * 126.03271 * 180.02562 * 14 13 12 16 16 C 1.34946 * 107.92772 * 359.75106 * 14 13 12 17 17 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 18 18 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 19 19 C 1.46503 * 125.97580 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.47232 * 270.00070 * 19 18 2 21 21 H 1.08004 * 119.99852 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00303 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47492 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46992 * 120.00209 * 24 22 20 27 27 H 1.48500 * 109.46936 * 240.00003 * 24 22 20 28 28 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 29 29 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 30 30 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 31 31 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 33 33 H 1.08998 * 109.46518 * 90.00508 * 9 8 6 34 34 H 1.08994 * 109.46858 * 210.00206 * 9 8 6 35 35 H 1.09001 * 109.47111 * 330.00312 * 9 8 6 36 36 H 1.08994 * 109.47013 * 209.99592 * 10 8 6 37 37 H 1.09005 * 109.46881 * 329.99727 * 10 8 6 38 38 H 1.08000 * 125.89376 * 0.02562 * 12 11 10 39 39 H 1.09000 * 109.46968 * 89.97307 * 15 14 13 40 40 H 1.08997 * 109.46778 * 209.97427 * 15 14 13 41 41 H 1.08994 * 109.47002 * 329.97178 * 15 14 13 42 42 H 1.08003 * 126.12684 * 180.23333 * 16 14 13 43 43 H 1.09001 * 109.47222 * 29.99739 * 19 18 2 44 44 H 1.08997 * 109.47398 * 150.00005 * 19 18 2 45 45 H 0.97000 * 119.99662 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 7.0664 3.0046 -0.0113 10 6 5.5813 5.0621 -0.0152 11 6 5.5280 5.5629 1.4051 12 6 6.6239 5.9515 2.1824 13 7 6.1811 6.3251 3.3554 14 7 4.7873 6.1852 3.3619 15 6 3.8953 6.4947 4.4822 16 6 4.4108 5.7209 2.1521 17 7 3.6337 -0.6576 0.0035 18 7 2.3017 -1.0909 0.0059 19 6 1.8501 -2.4846 0.0140 20 6 1.6957 -2.9544 1.4375 21 1 1.9120 -2.2819 2.2546 22 6 1.2775 -4.2423 1.6970 23 7 1.0127 -5.0606 0.7021 24 14 1.0869 -4.8248 3.4616 25 1 1.4437 -3.7209 4.3886 26 1 -0.3209 -5.2338 3.6984 27 1 1.9857 -5.9825 3.7005 28 1 -0.3632 0.0056 1.0277 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8927 -0.5089 31 1 1.9721 2.1210 0.0004 32 1 5.6588 1.0777 -0.0066 33 1 7.3995 2.8551 -1.0383 34 1 7.7615 3.6681 0.5032 35 1 7.0325 2.0443 0.5032 36 1 6.4306 5.5134 -0.5280 37 1 4.6598 5.3329 -0.5308 38 1 7.6572 5.9452 1.8681 39 1 3.5762 7.5348 4.4159 40 1 3.0222 5.8435 4.4420 41 1 4.4239 6.3360 5.4221 42 1 3.3993 5.5107 1.8373 43 1 0.8912 -2.5588 -0.4990 44 1 2.5845 -3.1075 -0.4966 45 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348207267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:34 Heat of formation + Delta-G solvation = 144.356571 kcal Electronic energy + Delta-G solvation = -27947.915739 eV Core-core repulsion = 24005.044667 eV Total energy + Delta-G solvation = -3942.871072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41284 -40.71502 -39.63102 -35.87955 -34.82099 -33.54966 -33.22913 -31.56840 -30.98532 -30.56356 -28.09675 -27.02494 -26.54441 -26.29212 -25.09307 -22.96176 -21.33857 -21.25112 -20.28326 -19.69529 -19.09926 -17.54201 -17.01547 -16.66986 -16.47051 -15.83901 -15.56466 -15.41091 -14.76561 -14.63534 -14.32604 -14.20302 -14.05660 -13.60095 -13.33395 -13.10347 -13.00270 -12.91216 -12.63391 -12.59089 -12.46697 -12.24605 -12.13502 -11.87020 -11.60542 -11.37164 -11.07006 -10.83877 -10.79630 -10.38897 -10.23853 -9.95512 -9.61496 -9.58456 -9.48670 -8.86914 -8.63882 -8.59209 -7.87082 -7.35766 -6.24459 -4.31772 1.71182 2.25236 2.35208 2.68521 2.82680 3.14743 3.20330 3.28258 3.34197 3.56645 3.88860 4.16144 4.30814 4.32814 4.73430 4.86723 4.88617 4.90275 5.00860 5.09249 5.14059 5.16033 5.32377 5.42883 5.46671 5.49952 5.69739 5.75005 5.91429 5.96324 6.13175 6.19599 6.36377 6.45207 6.49550 6.64952 6.71726 6.82296 6.95274 7.06373 7.13564 7.50888 7.57190 7.68829 7.90684 7.95351 8.10438 8.65308 8.71118 8.78778 9.34441 10.82734 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.002626 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.735273 B =10660.015039 C =11320.367368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.288 4.288 4 C 0.283 3.717 5 N -0.645 5.645 6 C 0.716 3.284 7 O -0.567 6.567 8 N -0.626 5.626 9 C 0.077 3.923 10 C 0.214 3.786 11 C -0.265 4.265 12 C 0.058 3.942 13 N -0.304 5.304 14 N -0.378 5.378 15 C 0.101 3.899 16 C 0.089 3.911 17 N -0.325 5.325 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.534 4.534 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.405 0.595 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.180 0.820 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.178 0.822 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.234 22.129 -0.107 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.296 5.296 6 C 0.417 3.583 7 O -0.443 6.443 8 N -0.364 5.364 9 C -0.067 4.067 10 C 0.090 3.910 11 C -0.278 4.278 12 C -0.129 4.129 13 N -0.125 5.125 14 N -0.159 5.159 15 C -0.041 4.041 16 C -0.059 4.059 17 N -0.156 5.156 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.572 4.572 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.242 0.758 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.197 0.803 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.195 0.805 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.274 21.618 1.135 23.175 hybrid contribution -0.159 -0.462 0.323 0.586 sum 8.115 21.156 1.458 22.706 Atomic orbital electron populations 1.20319 0.88004 1.02764 1.03049 1.21052 0.94829 0.87223 1.01070 1.21214 0.89679 0.99730 1.21341 1.18697 0.86684 0.89263 1.02439 1.41607 1.07563 1.03899 1.76519 1.15569 0.84511 0.80372 0.77852 1.90818 1.23290 1.73402 1.56791 1.47109 1.04740 1.06168 1.78386 1.21755 0.84096 0.99039 1.01768 1.19452 1.03423 0.77091 0.90987 1.20447 0.92133 1.15064 1.00130 1.23744 0.99694 0.98412 0.91055 1.77324 0.88641 1.24931 1.21645 1.48521 1.05376 1.50658 1.11395 1.21874 0.92368 1.02014 0.87796 1.22578 1.00868 0.97067 0.85394 1.77246 0.99893 1.08411 1.30059 1.48947 1.00924 1.07707 1.52565 1.19665 0.95926 0.71445 0.98855 1.21370 1.46489 0.97936 0.91436 0.91749 1.24926 0.94735 0.96076 0.98094 1.69929 1.45094 1.06932 1.31070 0.86313 0.77855 0.78772 0.83819 1.19626 1.20648 1.20662 0.90547 0.90867 0.90924 0.82258 0.75845 0.92330 0.90625 0.91613 0.89665 0.89032 0.80314 0.90752 0.89259 0.89367 0.80494 0.92838 0.93066 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.06 16 2 C 0.09 1.90 6.93 -82.28 -0.57 1.33 16 3 C -0.29 -5.98 9.52 -39.83 -0.38 -6.36 16 4 C 0.28 5.87 8.11 -154.36 -1.25 4.62 16 5 N -0.64 -10.48 5.32 -15.51 -0.08 -10.57 16 6 C 0.72 10.80 8.25 -86.92 -0.72 10.08 16 7 O -0.57 -9.92 13.05 5.28 0.07 -9.85 16 8 N -0.63 -6.73 2.86 -188.74 -0.54 -7.27 16 9 C 0.08 0.57 10.21 59.85 0.61 1.18 16 10 C 0.21 1.94 5.89 -5.20 -0.03 1.91 16 11 C -0.26 -2.72 5.68 -105.05 -0.60 -3.31 16 12 C 0.06 0.58 11.96 -17.36 -0.21 0.37 16 13 N -0.30 -3.66 12.58 30.62 0.39 -3.28 16 14 N -0.38 -4.10 4.01 -68.16 -0.27 -4.38 16 15 C 0.10 0.71 11.47 59.85 0.69 1.40 16 16 C 0.09 0.97 11.40 -17.22 -0.20 0.77 16 17 N -0.33 -7.63 12.59 31.44 0.40 -7.23 16 18 N -0.32 -7.65 3.59 -58.32 -0.21 -7.86 16 19 C 0.26 6.69 5.99 -5.19 -0.03 6.66 16 20 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 21 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 24 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.25 7.07 -51.93 -0.37 0.89 16 31 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 32 H 0.41 5.51 6.55 -40.82 -0.27 5.24 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 35 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 36 H 0.09 0.52 8.07 -51.93 -0.42 0.11 16 37 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.05 1.36 7.04 -51.93 -0.37 1.00 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -35.38 384.21 -7.70 -43.08 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.21 Total: 5.68 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.74 Total: 4.13 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.41 Total: -65.01 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.38 -7.70 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.436 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds