Wall clock time and date at job start Tue Mar 31 2020 17:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46506 * 119.99880 * 0.26799 * 8 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 11 11 C 1.50697 * 109.47340 * 89.99486 * 10 8 6 12 12 C 1.39873 * 126.04152 * 90.02510 * 11 10 8 13 13 N 1.30835 * 108.20355 * 179.97438 * 12 11 10 14 14 N 1.40084 * 108.20428 * 0.02562 * 13 12 11 15 15 C 1.46507 * 126.03271 * 180.02562 * 14 13 12 16 16 C 1.34946 * 107.92772 * 359.75106 * 14 13 12 17 17 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 18 18 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 19 19 C 1.46503 * 125.97580 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.47232 * 270.00070 * 19 18 2 21 21 H 1.08004 * 119.99852 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00303 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99755 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47492 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46992 * 120.00209 * 24 22 20 27 27 H 1.48500 * 109.46936 * 240.00003 * 24 22 20 28 28 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 29 29 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 30 30 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 31 31 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 33 33 H 1.08998 * 109.46518 * 90.00508 * 9 8 6 34 34 H 1.08994 * 109.46858 * 210.00206 * 9 8 6 35 35 H 1.09001 * 109.47111 * 330.00312 * 9 8 6 36 36 H 1.08994 * 109.47013 * 209.99592 * 10 8 6 37 37 H 1.09005 * 109.46881 * 329.99727 * 10 8 6 38 38 H 1.08000 * 125.89376 * 0.02562 * 12 11 10 39 39 H 1.09000 * 109.46968 * 89.97307 * 15 14 13 40 40 H 1.08997 * 109.46778 * 209.97427 * 15 14 13 41 41 H 1.08994 * 109.47002 * 329.97178 * 15 14 13 42 42 H 1.08003 * 126.12684 * 180.23333 * 16 14 13 43 43 H 1.09001 * 109.47222 * 29.99739 * 19 18 2 44 44 H 1.08997 * 109.47398 * 150.00005 * 19 18 2 45 45 H 0.97000 * 119.99662 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 7.0664 3.0046 -0.0113 10 6 5.5813 5.0621 -0.0152 11 6 5.5280 5.5629 1.4051 12 6 6.6239 5.9515 2.1824 13 7 6.1811 6.3251 3.3554 14 7 4.7873 6.1852 3.3619 15 6 3.8953 6.4947 4.4822 16 6 4.4108 5.7209 2.1521 17 7 3.6337 -0.6576 0.0035 18 7 2.3017 -1.0909 0.0059 19 6 1.8501 -2.4846 0.0140 20 6 1.6957 -2.9544 1.4375 21 1 1.9120 -2.2819 2.2546 22 6 1.2775 -4.2423 1.6970 23 7 1.0127 -5.0606 0.7021 24 14 1.0869 -4.8248 3.4616 25 1 1.4437 -3.7209 4.3886 26 1 -0.3209 -5.2338 3.6984 27 1 1.9857 -5.9825 3.7005 28 1 -0.3632 0.0056 1.0277 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8927 -0.5089 31 1 1.9721 2.1210 0.0004 32 1 5.6588 1.0777 -0.0066 33 1 7.3995 2.8551 -1.0383 34 1 7.7615 3.6681 0.5032 35 1 7.0325 2.0443 0.5032 36 1 6.4306 5.5134 -0.5280 37 1 4.6598 5.3329 -0.5308 38 1 7.6572 5.9452 1.8681 39 1 3.5762 7.5348 4.4159 40 1 3.0222 5.8435 4.4420 41 1 4.4239 6.3360 5.4221 42 1 3.3993 5.5107 1.8373 43 1 0.8912 -2.5588 -0.4990 44 1 2.5845 -3.1075 -0.4966 45 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348207267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:32 Heat of formation + Delta-G solvation = 121.979083 kcal Electronic energy + Delta-G solvation = -27948.886099 eV Core-core repulsion = 24005.044667 eV Total energy + Delta-G solvation = -3943.841432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.34888 -42.08769 -40.89234 -36.89469 -36.24355 -35.30820 -34.14648 -33.02668 -32.59631 -31.67459 -28.90307 -28.49306 -27.83500 -27.56587 -26.07705 -24.80069 -22.60115 -22.00064 -21.28177 -21.17492 -20.38888 -18.84495 -18.64329 -17.88199 -17.68421 -17.21201 -16.80758 -16.46307 -16.20409 -15.84744 -15.73283 -15.32620 -15.14088 -14.64574 -14.62664 -14.27234 -14.05817 -13.81651 -13.74360 -13.65009 -13.51259 -13.48042 -13.26834 -13.20820 -13.11419 -12.81148 -12.67210 -12.54290 -12.25611 -12.06739 -11.56892 -11.52265 -11.30977 -11.00476 -10.73380 -10.37109 -9.78313 -9.52272 -9.38632 -9.01187 -8.32082 -6.49984 0.89340 1.06319 1.19201 1.36415 1.38187 1.50843 1.66352 1.73366 1.80033 2.22846 2.36335 2.45968 2.96886 2.99893 3.66152 3.87184 4.00967 4.19254 4.25185 4.30292 4.33970 4.38917 4.46136 4.50954 4.63694 4.72416 4.73939 4.78540 4.81218 4.91100 4.92904 4.98183 5.01516 5.04980 5.16102 5.19418 5.27837 5.54594 5.63839 5.75675 5.82051 5.85722 6.01900 6.09131 6.29960 6.62277 6.69882 6.75284 7.14321 7.20995 7.48037 8.73582 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.002626 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.735273 B =10660.015039 C =11320.367368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 C -0.295 4.295 4 C 0.292 3.708 5 N -0.640 5.640 6 C 0.709 3.291 7 O -0.595 6.595 8 N -0.614 5.614 9 C 0.068 3.932 10 C 0.214 3.786 11 C -0.269 4.269 12 C 0.061 3.939 13 N -0.338 5.338 14 N -0.386 5.386 15 C 0.093 3.907 16 C 0.071 3.929 17 N -0.364 5.364 18 N -0.345 5.345 19 C 0.276 3.724 20 C -0.551 4.551 21 H 0.048 0.952 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.266 1.266 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.417 0.583 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.212 0.788 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.176 0.824 43 H 0.052 0.948 44 H 0.023 0.977 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 23.431 0.385 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.037 3.963 5 N -0.293 5.293 6 C 0.410 3.590 7 O -0.473 6.473 8 N -0.350 5.350 9 C -0.074 4.074 10 C 0.091 3.909 11 C -0.282 4.282 12 C -0.125 4.125 13 N -0.159 5.159 14 N -0.168 5.168 15 C -0.047 4.047 16 C -0.077 4.077 17 N -0.195 5.195 18 N -0.127 5.127 19 C 0.157 3.843 20 C -0.590 4.590 21 H 0.066 0.934 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.191 1.191 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.186 0.814 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.228 0.772 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.144 22.963 1.624 24.770 hybrid contribution -0.344 -0.727 0.138 0.816 sum 8.799 22.236 1.762 23.979 Atomic orbital electron populations 1.20457 0.85399 1.04179 1.03856 1.21746 0.96610 0.86481 0.99610 1.21399 0.89784 0.99874 1.21533 1.19005 0.88245 0.88903 1.00150 1.41662 1.06896 1.04173 1.76577 1.15825 0.85370 0.80003 0.77812 1.90783 1.24837 1.73670 1.58023 1.47220 1.04786 1.06469 1.76575 1.22048 0.82594 0.99302 1.03436 1.19662 1.04614 0.75956 0.90634 1.20617 0.92036 1.15002 1.00542 1.24260 1.01009 0.97052 0.90184 1.77276 0.89408 1.26261 1.22994 1.48814 1.05423 1.50547 1.12000 1.22116 0.92270 1.03319 0.87016 1.22772 1.01302 0.97601 0.85993 1.77162 1.00065 1.09891 1.32359 1.48746 1.01697 1.07466 1.54831 1.19223 0.94877 0.72519 0.97697 1.21465 1.47349 0.98354 0.91791 0.93386 1.25723 0.93980 0.95894 1.02226 1.70007 1.45183 1.07411 1.33046 0.85310 0.78514 0.78052 0.78601 1.19974 1.19114 1.19956 0.89924 0.87521 0.91363 0.81421 0.74470 0.90370 0.87901 0.92152 0.85810 0.90254 0.77197 0.89121 0.88266 0.89135 0.80674 0.93006 0.95842 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 2 C 0.09 3.66 6.93 41.39 0.29 3.95 16 3 C -0.29 -12.23 9.52 22.11 0.21 -12.02 16 4 C 0.29 12.20 8.11 133.31 1.08 13.28 16 5 N -0.64 -20.43 5.32 -321.23 -1.71 -22.14 16 6 C 0.71 20.61 8.25 179.05 1.48 22.08 16 7 O -0.60 -20.49 13.05 -4.01 -0.05 -20.55 16 8 N -0.61 -11.81 2.86 -869.31 -2.48 -14.29 16 9 C 0.07 0.80 10.21 127.77 1.30 2.11 16 10 C 0.21 3.36 5.89 85.63 0.50 3.86 16 11 C -0.27 -5.02 5.68 -20.14 -0.11 -5.14 16 12 C 0.06 1.07 11.96 85.24 1.02 2.09 16 13 N -0.34 -7.70 12.58 -57.02 -0.72 -8.42 16 14 N -0.39 -8.09 4.01 -369.56 -1.48 -9.58 16 15 C 0.09 1.25 11.47 127.77 1.47 2.71 16 16 C 0.07 1.52 11.40 83.54 0.95 2.47 16 17 N -0.36 -17.48 12.59 -54.43 -0.69 -18.16 16 18 N -0.34 -16.99 3.59 -338.44 -1.22 -18.20 16 19 C 0.28 14.77 5.99 85.63 0.51 15.28 16 20 C -0.55 -31.26 9.39 25.60 0.24 -31.02 16 21 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 22 C 0.02 1.25 5.46 84.66 0.46 1.71 16 23 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 24 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.07 2.35 7.07 -2.39 -0.02 2.33 16 31 H 0.17 6.67 5.91 -2.91 -0.02 6.65 16 32 H 0.42 10.99 6.55 -92.71 -0.61 10.39 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 35 H 0.06 0.80 6.36 -2.39 -0.02 0.79 16 36 H 0.12 1.02 8.07 -2.39 -0.02 1.00 16 37 H 0.08 1.48 7.42 -2.38 -0.02 1.46 16 38 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 44 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -77.62 384.21 4.50 -73.12 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.41 Total: 25.27 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 10.12 Total: 19.38 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -8.01 Total: -142.61 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -77.62 4.50 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.100 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds