Wall clock time and date at job start Tue Mar 31 2020 16:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99937 * 2 1 4 4 C 1.50703 * 109.47289 * 84.99851 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 S 1.65596 * 120.00234 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39988 * 23.54158 * 12 2 1 14 14 O 1.42093 * 106.40335 * 156.45809 * 12 2 1 15 15 N 1.65597 * 107.21801 * 270.00150 * 12 2 1 16 16 C 1.47080 * 120.88018 * 269.71704 * 15 12 2 17 17 C 1.53700 * 108.27434 * 128.75659 * 16 15 12 18 18 N 1.46901 * 109.25641 * 54.08304 * 17 16 15 19 19 C 1.46905 * 110.99646 * 172.60825 * 18 17 16 20 20 H 1.08997 * 110.64838 * 65.00267 * 19 18 17 21 21 C 1.54599 * 110.72464 * 301.84818 * 19 18 17 22 22 C 1.53993 * 105.14123 * 219.68946 * 21 19 18 23 23 N 1.47902 * 107.05658 * 358.77243 * 22 21 19 24 24 C 1.48731 * 105.94224 * 25.20737 * 23 22 21 25 25 C 1.46894 * 111.27221 * 296.75518 * 18 17 16 26 26 C 1.47084 * 120.88299 * 90.00126 * 15 12 2 27 27 H 1.08999 * 109.47196 * 90.00199 * 1 2 3 28 28 H 1.08998 * 109.46736 * 210.00494 * 1 2 3 29 29 H 1.08999 * 109.47053 * 330.00000 * 1 2 3 30 30 H 1.09001 * 109.47060 * 205.00301 * 3 2 1 31 31 H 1.09004 * 109.47073 * 324.99790 * 3 2 1 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.63235 * 248.52248 * 16 15 12 34 34 H 1.08993 * 109.62889 * 9.10531 * 16 15 12 35 35 H 1.08998 * 109.65107 * 294.07715 * 17 16 15 36 36 H 1.09003 * 109.42116 * 173.94955 * 17 16 15 37 37 H 1.09005 * 110.31046 * 338.60411 * 21 19 18 38 38 H 1.08998 * 110.30782 * 100.67514 * 21 19 18 39 39 H 1.08998 * 109.91630 * 118.12813 * 22 21 19 40 40 H 1.08998 * 109.91777 * 239.22809 * 22 21 19 41 41 H 1.00894 * 111.00517 * 264.81971 * 23 22 21 42 42 H 1.09001 * 110.83724 * 202.57292 * 24 23 22 43 43 H 1.09000 * 110.58788 * 79.38563 * 24 23 22 44 44 H 1.09003 * 109.49380 * 303.15131 * 25 18 17 45 45 H 1.08998 * 109.49635 * 183.06782 * 25 18 17 46 46 H 1.08996 * 109.62772 * 350.88777 * 26 15 12 47 47 H 1.08992 * 109.63050 * 111.27982 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9289 1.1936 2.2331 6 6 3.0006 2.9505 1.6664 7 7 3.5034 3.6470 0.6705 8 14 3.1784 3.5669 3.4208 9 1 4.4331 3.0323 4.0084 10 1 3.2245 5.0511 3.4215 11 1 2.0190 3.1072 4.2268 12 16 2.2931 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5826 16 6 3.7460 -1.4250 2.3016 17 6 3.3119 -0.7721 3.6236 18 7 2.4493 -1.7030 4.3635 19 6 2.1542 -1.1912 5.7085 20 1 1.5666 -0.2750 5.6507 21 6 3.4595 -0.9548 6.5025 22 6 3.1485 -1.4227 7.9362 23 7 1.7377 -1.8667 7.9513 24 6 1.4189 -2.2618 6.5533 25 6 1.2116 -1.9847 3.6242 26 6 1.5567 -2.6823 2.3040 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1858 1.1178 -0.4344 31 1 1.6502 2.0044 -0.5895 32 1 3.9668 4.4806 0.8471 33 1 4.3791 -2.2882 2.5067 34 1 4.2928 -0.7018 1.6967 35 1 2.7623 0.1460 3.4158 36 1 4.1941 -0.5410 4.2206 37 1 4.2719 -1.5458 6.0795 38 1 3.7196 0.1037 6.4964 39 1 3.8018 -2.2524 8.2060 40 1 3.2885 -0.5977 8.6347 41 1 1.1285 -1.1251 8.2624 42 1 0.3444 -2.2216 6.3745 43 1 1.8088 -3.2566 6.3377 44 1 0.6913 -1.0498 3.4162 45 1 0.5707 -2.6331 4.2215 46 1 0.6554 -2.7906 1.7007 47 1 1.9822 -3.6652 2.5063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352544811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:58 Heat of formation + Delta-G solvation = -52.482464 kcal Electronic energy + Delta-G solvation = -29465.699538 eV Core-core repulsion = 25617.444086 eV Total energy + Delta-G solvation = -3848.255453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.167 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -39.58594 -37.48605 -36.73433 -35.51580 -35.24095 -33.86902 -32.57769 -31.10891 -29.41902 -28.49627 -27.84391 -25.28318 -25.01770 -23.72965 -22.42498 -21.49919 -20.72947 -19.91968 -18.39810 -17.43808 -16.90524 -16.77837 -16.48141 -15.78637 -15.77715 -14.90379 -14.81770 -14.43746 -14.26641 -14.11642 -13.81840 -13.55483 -13.38075 -13.23592 -12.89267 -12.43989 -12.34635 -12.25816 -12.11170 -11.83408 -11.75849 -11.63613 -11.41704 -11.29699 -11.24195 -11.20705 -11.06991 -10.84927 -10.79821 -10.64901 -10.61966 -10.48046 -10.12805 -9.82973 -8.95796 -8.74298 -8.58676 -8.18664 -8.01176 -6.20181 -4.26571 1.22509 3.12515 3.19183 3.21660 3.41670 3.79272 4.10349 4.17254 4.25162 4.54618 4.81162 4.85537 4.90125 4.92868 5.13730 5.23262 5.27258 5.31945 5.37463 5.43898 5.52527 5.55263 5.66194 5.70164 5.75109 5.79925 5.86620 5.90073 5.99677 6.01562 6.04649 6.11358 6.21882 6.38046 6.40946 6.48741 6.53032 6.87607 7.12137 7.15021 7.18295 7.28830 7.38276 7.58535 7.77729 8.07581 8.77911 9.38643 10.87954 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.006063 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.121934 B = 4617.215334 C = 6451.067956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.998 5.998 3 C 0.244 3.756 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 S 2.786 3.214 13 O -0.999 6.999 14 O -0.976 6.976 15 N -1.006 6.006 16 C 0.139 3.861 17 C 0.031 3.969 18 N -0.523 5.523 19 C 0.048 3.952 20 H 0.046 0.954 21 C -0.148 4.148 22 C 0.046 3.954 23 N -0.675 5.675 24 C 0.053 3.947 25 C 0.041 3.959 26 C 0.133 3.867 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.335 0.665 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -9.479 10.216 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.840 5.840 3 C 0.122 3.878 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 S 2.795 3.205 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.844 5.844 16 C 0.014 3.986 17 C -0.098 4.098 18 N -0.248 5.248 19 C -0.063 4.063 20 H 0.064 0.936 21 C -0.187 4.187 22 C -0.084 4.084 23 N -0.301 5.301 24 C -0.077 4.077 25 C -0.089 4.089 26 C 0.006 3.994 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.220 -10.903 9.712 14.952 hybrid contribution -0.492 2.590 0.810 2.758 sum -3.712 -8.314 10.522 13.915 Atomic orbital electron populations 1.21195 0.80240 1.01844 1.00595 1.57691 1.14128 1.23555 1.88591 1.19212 0.92191 0.78944 0.97459 1.21561 1.36517 1.06704 0.92867 0.91837 1.24918 0.95357 0.96538 0.96840 1.69922 1.36610 1.15184 1.30738 0.86703 0.78451 0.78420 0.85070 1.20290 1.21052 1.20153 1.01780 0.73112 0.72648 0.72947 1.93527 1.67420 1.60365 1.76991 1.93569 1.40772 1.85255 1.76435 1.58268 1.29450 1.64970 1.31741 1.21439 0.85676 0.99129 0.92405 1.22774 0.97591 0.94927 0.94499 1.62018 1.16099 1.45250 1.01432 1.23242 0.96313 0.96833 0.89885 0.93601 1.22857 0.98419 1.01727 0.95718 1.22678 0.90467 0.99564 0.95737 1.62841 1.03784 1.41308 1.22167 1.23192 0.99165 0.99301 0.86044 1.22470 0.91470 0.99988 0.94943 1.21349 0.91846 0.94050 0.92131 0.93743 0.93117 0.90974 0.93128 0.94498 0.92518 0.91540 0.88236 0.91556 0.90319 0.89746 0.91576 0.90472 0.91765 0.85056 0.91049 0.89072 0.93928 0.90156 0.89670 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 10.31 59.85 0.62 2.44 16 2 N -1.00 -20.25 3.23 -123.04 -0.40 -20.65 16 3 C 0.24 5.89 5.41 -5.19 -0.03 5.86 16 4 C -0.54 -13.27 9.16 -34.44 -0.32 -13.59 16 5 H 0.06 1.51 5.65 -52.49 -0.30 1.21 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 8 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 S 2.79 55.28 6.07 -107.50 -0.65 54.63 16 13 O -1.00 -20.31 15.99 -57.17 -0.91 -21.23 16 14 O -0.98 -22.49 15.46 -57.17 -0.88 -23.37 16 15 N -1.01 -16.83 3.38 -112.97 -0.38 -17.21 16 16 C 0.14 2.29 6.56 -3.36 -0.02 2.27 16 17 C 0.03 0.48 5.43 -3.46 -0.02 0.46 16 18 N -0.52 -6.96 4.47 -223.82 -1.00 -7.96 16 19 C 0.05 0.58 2.75 -65.85 -0.18 0.40 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 C -0.15 -1.67 5.32 -25.37 -0.14 -1.80 16 22 C 0.05 0.44 7.52 -2.75 -0.02 0.42 16 23 N -0.67 -6.77 7.52 -109.93 -0.83 -7.60 16 24 C 0.05 0.55 6.07 -1.79 -0.01 0.53 16 25 C 0.04 0.52 5.49 -3.70 -0.02 0.50 16 26 C 0.13 1.81 6.53 -3.60 -0.02 1.79 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.05 1.35 6.92 -51.93 -0.36 0.99 16 31 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.86 7.21 -51.93 -0.37 1.49 16 35 H 0.07 1.23 5.68 -51.93 -0.29 0.94 16 36 H 0.08 1.16 6.57 -51.93 -0.34 0.82 16 37 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.33 2.98 8.91 -39.29 -0.35 2.63 16 42 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.83 6.86 -51.93 -0.36 0.47 16 46 H 0.09 1.11 7.22 -51.93 -0.37 0.74 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -30.04 372.21 -11.72 -41.76 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.73 Total: 4.14 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.26 Total: 0.92 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.87 Total: -77.22 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.80 Total: -44.60 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 55.28 SS G_CDS: -0.65 Total: 54.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.04 -11.72 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.725 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds