Wall clock time and date at job start Tue Mar 31 2020 16:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99937 * 2 1 4 4 C 1.50703 * 109.47289 * 84.99851 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 S 1.65596 * 120.00234 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39988 * 23.54158 * 12 2 1 14 14 O 1.42093 * 106.40335 * 156.45809 * 12 2 1 15 15 N 1.65597 * 107.21801 * 270.00150 * 12 2 1 16 16 C 1.47080 * 120.88018 * 269.71704 * 15 12 2 17 17 C 1.53700 * 108.27434 * 128.75659 * 16 15 12 18 18 N 1.46901 * 109.25641 * 54.08304 * 17 16 15 19 19 C 1.46905 * 110.99646 * 172.60825 * 18 17 16 20 20 H 1.08997 * 110.64838 * 65.00267 * 19 18 17 21 21 C 1.54599 * 110.72464 * 301.84818 * 19 18 17 22 22 C 1.53993 * 105.14123 * 219.68946 * 21 19 18 23 23 N 1.47902 * 107.05658 * 358.77243 * 22 21 19 24 24 C 1.48731 * 105.94224 * 25.20737 * 23 22 21 25 25 C 1.46894 * 111.27221 * 296.75518 * 18 17 16 26 26 C 1.47084 * 120.88299 * 90.00126 * 15 12 2 27 27 H 1.08999 * 109.47196 * 90.00199 * 1 2 3 28 28 H 1.08998 * 109.46736 * 210.00494 * 1 2 3 29 29 H 1.08999 * 109.47053 * 330.00000 * 1 2 3 30 30 H 1.09001 * 109.47060 * 205.00301 * 3 2 1 31 31 H 1.09004 * 109.47073 * 324.99790 * 3 2 1 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.63235 * 248.52248 * 16 15 12 34 34 H 1.08993 * 109.62889 * 9.10531 * 16 15 12 35 35 H 1.08998 * 109.65107 * 294.07715 * 17 16 15 36 36 H 1.09003 * 109.42116 * 173.94955 * 17 16 15 37 37 H 1.09005 * 110.31046 * 338.60411 * 21 19 18 38 38 H 1.08998 * 110.30782 * 100.67514 * 21 19 18 39 39 H 1.08998 * 109.91630 * 118.12813 * 22 21 19 40 40 H 1.08998 * 109.91777 * 239.22809 * 22 21 19 41 41 H 1.00894 * 111.00517 * 264.81971 * 23 22 21 42 42 H 1.09001 * 110.83724 * 202.57292 * 24 23 22 43 43 H 1.09000 * 110.58788 * 79.38563 * 24 23 22 44 44 H 1.09003 * 109.49380 * 303.15131 * 25 18 17 45 45 H 1.08998 * 109.49635 * 183.06782 * 25 18 17 46 46 H 1.08996 * 109.62772 * 350.88777 * 26 15 12 47 47 H 1.08992 * 109.63050 * 111.27982 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9289 1.1936 2.2331 6 6 3.0006 2.9505 1.6664 7 7 3.5034 3.6470 0.6705 8 14 3.1784 3.5669 3.4208 9 1 4.4331 3.0323 4.0084 10 1 3.2245 5.0511 3.4215 11 1 2.0190 3.1072 4.2268 12 16 2.2931 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5826 16 6 3.7460 -1.4250 2.3016 17 6 3.3119 -0.7721 3.6236 18 7 2.4493 -1.7030 4.3635 19 6 2.1542 -1.1912 5.7085 20 1 1.5666 -0.2750 5.6507 21 6 3.4595 -0.9548 6.5025 22 6 3.1485 -1.4227 7.9362 23 7 1.7377 -1.8667 7.9513 24 6 1.4189 -2.2618 6.5533 25 6 1.2116 -1.9847 3.6242 26 6 1.5567 -2.6823 2.3040 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1858 1.1178 -0.4344 31 1 1.6502 2.0044 -0.5895 32 1 3.9668 4.4806 0.8471 33 1 4.3791 -2.2882 2.5067 34 1 4.2928 -0.7018 1.6967 35 1 2.7623 0.1460 3.4158 36 1 4.1941 -0.5410 4.2206 37 1 4.2719 -1.5458 6.0795 38 1 3.7196 0.1037 6.4964 39 1 3.8018 -2.2524 8.2060 40 1 3.2885 -0.5977 8.6347 41 1 1.1285 -1.1251 8.2624 42 1 0.3444 -2.2216 6.3745 43 1 1.8088 -3.2566 6.3377 44 1 0.6913 -1.0498 3.4162 45 1 0.5707 -2.6331 4.2215 46 1 0.6554 -2.7906 1.7007 47 1 1.9822 -3.6652 2.5063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352544811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:55 Heat of formation + Delta-G solvation = -76.937202 kcal Electronic energy + Delta-G solvation = -29466.759975 eV Core-core repulsion = 25617.444086 eV Total energy + Delta-G solvation = -3849.315890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.167 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.59326 -38.52006 -38.40074 -37.22142 -36.92503 -35.00424 -34.51028 -32.26522 -30.33157 -29.66347 -29.44244 -26.83413 -26.25150 -24.86480 -24.24825 -22.37395 -21.88497 -20.97052 -19.84608 -18.92182 -18.63600 -18.25763 -17.62948 -17.36159 -16.87804 -16.56113 -15.89303 -15.76755 -15.58902 -15.26839 -15.11944 -14.97378 -14.65028 -14.35512 -14.12272 -14.01716 -13.86108 -13.60003 -13.43362 -13.32695 -13.04123 -13.00703 -12.97177 -12.87201 -12.61679 -12.57360 -12.43003 -12.30311 -12.11577 -12.03235 -11.76563 -11.66851 -11.61577 -11.56097 -10.61530 -10.15044 -9.77317 -9.62685 -9.25445 -8.19607 -6.31908 -0.34976 1.35132 1.36039 1.44571 1.92435 2.36074 2.52350 2.80390 3.12404 3.31838 3.33979 3.63842 3.71086 3.99370 4.01746 4.07124 4.15659 4.30710 4.35067 4.36845 4.37755 4.45175 4.54661 4.66183 4.68267 4.71227 4.74682 4.82572 4.93180 4.95546 5.01633 5.04017 5.05655 5.10575 5.13426 5.20530 5.28971 5.44431 5.59043 5.70789 5.75167 5.93641 6.01947 6.09100 6.15195 6.41794 6.79888 7.37237 8.89052 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.006063 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.121934 B = 4617.215334 C = 6451.067956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.004 6.004 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.928 5.928 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.265 1.265 12 S 2.797 3.203 13 O -1.002 7.002 14 O -1.014 7.014 15 N -1.002 6.002 16 C 0.139 3.861 17 C 0.039 3.961 18 N -0.516 5.516 19 C 0.046 3.954 20 H 0.031 0.969 21 C -0.147 4.147 22 C 0.050 3.950 23 N -0.678 5.678 24 C 0.062 3.938 25 C 0.043 3.957 26 C 0.126 3.874 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.342 0.658 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -11.081 12.819 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.845 5.845 3 C 0.135 3.865 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.568 5.568 8 Si 0.772 3.228 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.190 1.190 12 S 2.806 3.194 13 O -0.986 6.986 14 O -0.998 6.998 15 N -0.843 5.843 16 C 0.013 3.987 17 C -0.090 4.090 18 N -0.241 5.241 19 C -0.065 4.065 20 H 0.049 0.951 21 C -0.186 4.186 22 C -0.080 4.080 23 N -0.305 5.305 24 C -0.068 4.068 25 C -0.086 4.086 26 C 0.001 3.999 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.131 0.869 46 H 0.112 0.888 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.449 -12.531 12.323 18.130 hybrid contribution -0.157 3.009 -0.006 3.013 sum -4.606 -9.522 12.317 16.236 Atomic orbital electron populations 1.21429 0.78127 1.03165 1.01812 1.57612 1.15595 1.22215 1.89112 1.18771 0.90754 0.80107 0.96899 1.21789 1.35464 1.06383 0.93218 0.90786 1.25694 0.95230 0.96936 1.00482 1.70059 1.37997 1.15756 1.32945 0.85733 0.78985 0.77428 0.80666 1.19425 1.21438 1.18972 1.01280 0.72185 0.72332 0.73578 1.93513 1.67311 1.60124 1.77660 1.93517 1.42722 1.85717 1.77888 1.58042 1.30259 1.65122 1.30866 1.21453 0.85675 0.99383 0.92208 1.22595 0.98026 0.93977 0.94421 1.62056 1.16216 1.44098 1.01757 1.23318 0.96848 0.96954 0.89364 0.95090 1.22847 0.97926 1.01197 0.96678 1.22660 0.90407 1.00066 0.94875 1.62839 1.04024 1.41776 1.21817 1.23129 0.99651 0.98333 0.85659 1.22527 0.91389 0.99813 0.94908 1.21675 0.91518 0.94418 0.92333 0.92655 0.90453 0.90969 0.96470 0.96394 0.92636 0.89336 0.91218 0.94626 0.89565 0.90114 0.92417 0.90180 0.90614 0.84244 0.89737 0.89237 0.95477 0.86938 0.88776 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 10.31 127.77 1.32 4.59 16 2 N -1.00 -41.04 3.23 -543.20 -1.75 -42.79 16 3 C 0.26 12.90 5.41 85.63 0.46 13.36 16 4 C -0.53 -26.56 9.16 25.60 0.23 -26.32 16 5 H 0.07 3.51 5.65 -2.91 -0.02 3.50 16 6 C 0.02 0.84 5.46 84.65 0.46 1.31 16 7 N -0.93 -52.85 13.29 21.45 0.28 -52.57 16 8 Si 0.95 40.79 29.54 68.60 2.03 42.81 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 S 2.80 110.83 6.07 -56.49 -0.34 110.48 16 13 O -1.00 -39.54 15.99 -128.00 -2.05 -41.59 16 14 O -1.01 -48.15 15.46 -128.00 -1.98 -50.13 16 15 N -1.00 -32.45 3.38 -511.33 -1.73 -34.18 16 16 C 0.14 4.49 6.56 86.50 0.57 5.06 16 17 C 0.04 1.19 5.43 86.54 0.47 1.66 16 18 N -0.52 -12.55 4.47 -862.02 -3.85 -16.40 16 19 C 0.05 0.99 2.75 46.12 0.13 1.12 16 20 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 21 C -0.15 -3.01 5.32 31.47 0.17 -2.84 16 22 C 0.05 0.84 7.52 86.45 0.65 1.49 16 23 N -0.68 -11.53 7.52 -501.72 -3.77 -15.30 16 24 C 0.06 1.08 6.07 86.61 0.53 1.61 16 25 C 0.04 0.97 5.49 86.39 0.47 1.44 16 26 C 0.13 3.08 6.53 86.35 0.56 3.65 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.02 0.97 6.92 -2.39 -0.02 0.96 16 31 H 0.02 0.95 8.11 -2.38 -0.02 0.93 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.69 7.21 -2.39 -0.02 2.67 16 35 H 0.04 1.30 5.68 -2.39 -0.01 1.29 16 36 H 0.09 2.45 6.57 -2.39 -0.02 2.43 16 37 H 0.08 1.71 7.54 -2.38 -0.02 1.69 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.34 5.06 8.91 -89.70 -0.80 4.26 16 42 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 1.85 6.86 -2.39 -0.02 1.83 16 46 H 0.09 2.17 7.22 -2.39 -0.02 2.15 16 47 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.35 372.21 -6.97 -72.32 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.17 Total: 21.24 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.02 Total: 6.11 kcal Atomic # 7 Polarization: -150.42 SS G_CDS: -10.82 Total: -161.24 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -4.03 Total: -91.72 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 110.83 SS G_CDS: -0.34 Total: 110.48 kcal Total: -65.35 -6.97 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352544811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.619 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds