Wall clock time and date at job start Tue Mar 31 2020 17:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46819 * 179.97438 * 10 9 8 12 12 C 1.39869 * 125.90017 * 124.71067 * 11 10 9 13 13 C 1.35318 * 107.92010 * 179.86407 * 12 11 10 14 14 N 1.34944 * 107.74528 * 0.39386 * 13 12 11 15 15 C 1.46505 * 126.03546 * 179.74760 * 14 13 12 16 16 N 1.30841 * 125.90150 * 305.02143 * 11 10 9 17 17 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97468 * 359.94647 * 18 2 1 20 20 C 1.50702 * 109.47635 * 89.99791 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46844 * 60.00071 * 24 22 20 26 26 H 1.48494 * 109.46947 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47031 * 300.00020 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 32 32 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 33 33 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 35 35 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 36 36 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 37 37 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 38 38 H 1.08003 * 126.03769 * 359.97438 * 12 11 10 39 39 H 1.08001 * 126.12510 * 180.14887 * 13 12 11 40 40 H 1.08993 * 109.47262 * 269.98181 * 15 14 13 41 41 H 1.09004 * 109.46636 * 29.98230 * 15 14 13 42 42 H 1.09003 * 109.46803 * 149.97748 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 19 18 2 44 44 H 1.09005 * 109.47259 * 329.99077 * 19 18 2 45 45 H 0.96997 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 6 6.8116 7.2151 0.0310 12 6 7.3712 8.0922 0.9658 13 6 7.0061 9.3503 0.6268 14 7 6.2353 9.2713 -0.4779 15 6 5.6196 10.3992 -1.1817 16 7 6.1276 7.9206 -0.8329 17 7 3.6337 -0.6575 -0.0044 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0124 20 6 1.6941 -2.9555 -1.4354 21 1 1.9094 -2.2838 -2.2532 22 6 1.2765 -4.2440 -1.6933 23 7 1.0148 -5.0622 -0.6974 24 14 1.0824 -4.8275 -3.4572 25 1 2.3876 -4.7262 -4.1585 26 1 0.6260 -6.2406 -3.4637 27 1 0.0802 -3.9799 -4.1515 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6587 1.0778 0.0037 33 1 6.6148 3.2075 0.0131 34 1 5.0323 5.3759 -0.8654 35 1 5.0339 5.3670 0.9146 36 1 7.5137 5.4022 0.9118 37 1 7.5114 5.4109 -0.8682 38 1 7.9875 7.8145 1.8081 39 1 7.2791 10.2552 1.1495 40 1 4.6302 10.5902 -0.7664 41 1 6.2418 11.2860 -1.0610 42 1 5.5290 10.1604 -2.2414 43 1 2.5851 -3.1070 0.4978 44 1 0.8919 -2.5584 0.5019 45 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355204572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:07 Heat of formation + Delta-G solvation = 128.246846 kcal Electronic energy + Delta-G solvation = -26608.133123 eV Core-core repulsion = 22664.563481 eV Total energy + Delta-G solvation = -3943.569642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.53962 -40.67535 -39.52582 -36.02810 -34.65351 -33.88401 -33.28681 -31.52230 -30.99649 -30.59498 -30.01082 -26.91896 -26.37652 -26.19970 -23.86467 -22.83565 -21.62165 -21.30777 -20.26380 -19.67698 -19.41067 -17.70444 -17.25190 -16.63794 -16.37501 -15.94648 -15.72374 -15.45588 -14.85845 -14.70388 -14.39811 -14.36808 -14.16773 -13.93247 -13.76717 -13.16817 -13.08431 -12.89685 -12.61185 -12.42303 -12.26209 -12.16558 -12.11985 -11.77735 -11.59796 -11.35039 -11.04668 -10.87861 -10.78501 -10.39814 -10.20294 -9.93969 -9.62537 -9.58146 -9.49159 -9.13667 -8.93416 -8.60250 -7.84088 -7.33210 -6.21316 -4.28957 1.51496 2.12033 2.33083 2.55609 2.72384 3.17921 3.26386 3.29855 3.34522 3.66686 3.91815 4.07662 4.28683 4.35625 4.42708 4.61884 4.67752 4.71908 4.83054 4.97332 5.11935 5.13555 5.32264 5.40077 5.48213 5.58543 5.75751 5.79546 5.83165 6.01617 6.16537 6.23043 6.30314 6.36155 6.55958 6.62018 6.67127 6.71460 7.01693 7.10697 7.20889 7.35893 7.60302 7.71563 7.93783 8.03369 8.13920 8.68523 8.73694 8.81533 9.37183 10.85654 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.001725 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.664083 B =16224.527144 C =16274.912737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.565 6.565 8 N -0.745 5.745 9 C 0.147 3.853 10 C -0.049 4.049 11 C 0.077 3.923 12 C -0.267 4.267 13 C 0.052 3.948 14 N -0.376 5.376 15 C 0.101 3.899 16 N -0.287 5.287 17 N -0.325 5.325 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.397 0.603 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.174 0.826 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 28.448 3.642 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.440 6.440 8 N -0.402 5.402 9 C 0.022 3.978 10 C -0.088 4.088 11 C -0.090 4.090 12 C -0.296 4.296 13 C -0.094 4.094 14 N -0.159 5.159 15 C -0.041 4.041 16 N -0.110 5.110 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.177 0.823 32 H 0.240 0.760 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.191 0.809 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.439 27.689 2.570 30.069 hybrid contribution 0.961 0.052 -0.187 0.981 sum 12.400 27.741 2.383 30.480 Atomic orbital electron populations 1.20369 0.88012 1.03801 1.02461 1.21051 0.94863 0.87156 1.01020 1.21249 0.89751 0.99826 1.21168 1.18663 0.86588 0.89238 1.02587 1.41387 1.07562 1.03717 1.76745 1.15598 0.84738 0.80364 0.78108 1.90880 1.23568 1.73471 1.56105 1.44983 1.07606 1.06481 1.81175 1.21100 0.96046 0.77310 1.03299 1.20175 0.97616 0.86843 1.04179 1.21995 0.96999 0.95976 0.94010 1.21420 1.11575 0.91488 1.05149 1.22553 0.96102 1.00124 0.90602 1.48534 1.39404 1.05836 1.22081 1.21881 0.98550 0.85123 0.98524 1.77381 1.23581 0.86557 1.23439 1.77237 0.99947 1.08330 1.30000 1.48948 1.00894 1.07689 1.52612 1.19659 0.95935 0.71440 0.98817 1.21308 1.46762 0.97934 0.91443 0.91795 1.24923 0.94723 0.96046 0.98077 1.69910 1.44955 1.06978 1.31158 0.86419 0.78801 0.77617 0.83868 1.20017 1.20992 1.19939 0.91147 0.89967 0.90663 0.82257 0.75952 0.76959 0.90744 0.91309 0.89076 0.89362 0.83366 0.80905 0.90582 0.89479 0.89181 0.93052 0.92839 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.89 36.01 0.36 -1.21 16 2 C 0.09 1.98 6.93 -82.28 -0.57 1.41 16 3 C -0.29 -6.24 9.52 -39.83 -0.38 -6.62 16 4 C 0.28 5.99 8.11 -154.36 -1.25 4.74 16 5 N -0.64 -10.44 5.46 -15.51 -0.08 -10.53 16 6 C 0.71 11.13 8.53 -86.92 -0.74 10.39 16 7 O -0.57 -11.00 13.47 5.28 0.07 -10.93 16 8 N -0.75 -7.85 5.56 -65.22 -0.36 -8.21 16 9 C 0.15 1.50 5.63 -4.04 -0.02 1.48 16 10 C -0.05 -0.35 5.91 -27.88 -0.16 -0.51 16 11 C 0.08 0.71 6.49 -82.40 -0.53 0.18 16 12 C -0.27 -2.01 10.72 -40.01 -0.43 -2.44 16 13 C 0.05 0.34 11.49 -17.22 -0.20 0.14 16 14 N -0.38 -3.04 4.01 -68.16 -0.27 -3.32 16 15 C 0.10 0.41 11.47 59.85 0.69 1.10 16 16 N -0.29 -3.13 12.54 33.67 0.42 -2.70 16 17 N -0.32 -7.69 12.59 31.44 0.40 -7.30 16 18 N -0.32 -7.77 3.59 -58.32 -0.21 -7.98 16 19 C 0.26 6.77 5.81 -5.20 -0.03 6.74 16 20 C -0.54 -14.99 9.39 -34.44 -0.32 -15.31 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 24 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.16 3.42 5.91 -52.49 -0.31 3.11 16 32 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 33 H 0.40 2.76 8.49 -40.82 -0.35 2.42 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 39 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -37.04 388.95 -8.60 -45.64 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.43 Total: 5.89 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.70 Total: 1.78 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.62 Total: -64.60 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.04 -8.60 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355204572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.883 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds