Wall clock time and date at job start Tue Mar 31 2020 17:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46819 * 179.97438 * 10 9 8 12 12 C 1.39869 * 125.90017 * 124.71067 * 11 10 9 13 13 C 1.35318 * 107.92010 * 179.86407 * 12 11 10 14 14 N 1.34944 * 107.74528 * 0.39386 * 13 12 11 15 15 C 1.46505 * 126.03546 * 179.74760 * 14 13 12 16 16 N 1.30841 * 125.90150 * 305.02143 * 11 10 9 17 17 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97468 * 359.94647 * 18 2 1 20 20 C 1.50702 * 109.47635 * 89.99791 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46844 * 60.00071 * 24 22 20 26 26 H 1.48494 * 109.46947 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47031 * 300.00020 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 32 32 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 33 33 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 35 35 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 36 36 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 37 37 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 38 38 H 1.08003 * 126.03769 * 359.97438 * 12 11 10 39 39 H 1.08001 * 126.12510 * 180.14887 * 13 12 11 40 40 H 1.08993 * 109.47262 * 269.98181 * 15 14 13 41 41 H 1.09004 * 109.46636 * 29.98230 * 15 14 13 42 42 H 1.09003 * 109.46803 * 149.97748 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 19 18 2 44 44 H 1.09005 * 109.47259 * 329.99077 * 19 18 2 45 45 H 0.96997 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 6 6.8116 7.2151 0.0310 12 6 7.3712 8.0922 0.9658 13 6 7.0061 9.3503 0.6268 14 7 6.2353 9.2713 -0.4779 15 6 5.6196 10.3992 -1.1817 16 7 6.1276 7.9206 -0.8329 17 7 3.6337 -0.6575 -0.0044 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0124 20 6 1.6941 -2.9555 -1.4354 21 1 1.9094 -2.2838 -2.2532 22 6 1.2765 -4.2440 -1.6933 23 7 1.0148 -5.0622 -0.6974 24 14 1.0824 -4.8275 -3.4572 25 1 2.3876 -4.7262 -4.1585 26 1 0.6260 -6.2406 -3.4637 27 1 0.0802 -3.9799 -4.1515 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6587 1.0778 0.0037 33 1 6.6148 3.2075 0.0131 34 1 5.0323 5.3759 -0.8654 35 1 5.0339 5.3670 0.9146 36 1 7.5137 5.4022 0.9118 37 1 7.5114 5.4109 -0.8682 38 1 7.9875 7.8145 1.8081 39 1 7.2791 10.2552 1.1495 40 1 4.6302 10.5902 -0.7664 41 1 6.2418 11.2860 -1.0610 42 1 5.5290 10.1604 -2.2414 43 1 2.5851 -3.1070 0.4978 44 1 0.8919 -2.5584 0.5019 45 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355204572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:05 Heat of formation + Delta-G solvation = 102.271705 kcal Electronic energy + Delta-G solvation = -26609.259490 eV Core-core repulsion = 22664.563481 eV Total energy + Delta-G solvation = -3944.696008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.29981 -42.06678 -40.90973 -37.01127 -36.16615 -35.30502 -34.53556 -33.02987 -32.61034 -31.50898 -30.71045 -28.56904 -27.85909 -27.18602 -25.16285 -24.30473 -22.76534 -21.97407 -21.45641 -21.14739 -20.48614 -19.00726 -18.74027 -17.86029 -17.67849 -17.19897 -16.96830 -16.47081 -16.25865 -16.00195 -15.80363 -15.46465 -15.32486 -14.85960 -14.63051 -14.41855 -14.30583 -13.79552 -13.73940 -13.61116 -13.56378 -13.48948 -13.15017 -13.07686 -12.82692 -12.79614 -12.66667 -12.48014 -12.23086 -12.09413 -11.57462 -11.47161 -11.34532 -11.15307 -10.72017 -10.25116 -10.17126 -9.54512 -9.45264 -9.06197 -8.30899 -6.48807 0.96170 1.03586 1.13195 1.38991 1.40565 1.49600 1.67374 1.72000 1.84636 2.12314 2.36515 2.40373 2.98232 3.14693 3.63662 3.87238 3.90575 4.09397 4.17575 4.19049 4.22218 4.44750 4.48280 4.56421 4.70521 4.71769 4.77686 4.79628 4.87540 4.89129 4.94826 5.01710 5.03840 5.05742 5.15644 5.21320 5.23563 5.44937 5.55133 5.73291 5.82861 5.89862 5.99100 6.20921 6.28755 6.63037 6.77675 6.79963 7.15455 7.21973 7.44242 8.74470 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.001725 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.664083 B =16224.527144 C =16274.912737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.300 4.300 4 C 0.292 3.708 5 N -0.634 5.634 6 C 0.710 3.290 7 O -0.604 6.604 8 N -0.718 5.718 9 C 0.154 3.846 10 C -0.038 4.038 11 C 0.061 3.939 12 C -0.284 4.284 13 C 0.057 3.943 14 N -0.385 5.385 15 C 0.092 3.908 16 N -0.339 5.339 17 N -0.358 5.358 18 N -0.343 5.343 19 C 0.276 3.724 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.272 1.272 27 H -0.266 1.266 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.423 0.577 33 H 0.418 0.582 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.212 0.788 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.025 0.975 44 H 0.052 0.948 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.763 30.126 3.554 33.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.037 3.963 5 N -0.286 5.286 6 C 0.409 3.591 7 O -0.482 6.482 8 N -0.376 5.376 9 C 0.029 3.971 10 C -0.077 4.077 11 C -0.105 4.105 12 C -0.313 4.313 13 C -0.089 4.089 14 N -0.168 5.168 15 C -0.048 4.048 16 N -0.163 5.163 17 N -0.189 5.189 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.593 4.593 21 H 0.067 0.933 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.191 1.191 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.181 0.819 32 H 0.261 0.739 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.186 0.814 39 H 0.229 0.771 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.102 0.898 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.616 29.393 2.485 32.083 hybrid contribution 0.668 -0.284 -0.111 0.735 sum 13.284 29.109 2.374 32.085 Atomic orbital electron populations 1.20493 0.85419 1.04305 1.04098 1.21718 0.96630 0.86433 0.99494 1.21397 0.90151 0.99810 1.21738 1.18943 0.88064 0.88918 1.00363 1.41338 1.07117 1.03656 1.76476 1.15800 0.85296 0.80157 0.77800 1.90849 1.25543 1.74012 1.57815 1.44773 1.07353 1.06297 1.79134 1.21045 0.97879 0.76660 1.01484 1.20160 0.95664 0.85832 1.06023 1.22343 0.97075 0.96786 0.94283 1.21778 1.12223 0.91696 1.05618 1.23228 0.94566 1.01356 0.89778 1.48871 1.39590 1.05566 1.22739 1.22159 0.99504 0.85143 0.97954 1.77296 1.25415 0.88365 1.25266 1.77160 1.00040 1.09612 1.32088 1.48761 1.01649 1.07439 1.54709 1.19241 0.94932 0.72412 0.97734 1.21419 1.47647 0.98379 0.91806 0.93300 1.25716 0.93955 0.95862 1.02205 1.69992 1.45008 1.07395 1.33108 0.85427 0.78715 0.77680 0.78789 1.20110 1.19671 1.19114 0.88856 0.91345 0.88146 0.81934 0.73940 0.74417 0.93226 0.92565 0.86306 0.88343 0.81444 0.77115 0.90088 0.86223 0.89837 0.95653 0.93014 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.89 71.24 0.70 -2.28 16 2 C 0.09 3.86 6.93 41.39 0.29 4.15 16 3 C -0.30 -13.02 9.52 22.11 0.21 -12.81 16 4 C 0.29 12.42 8.11 133.31 1.08 13.50 16 5 N -0.63 -20.11 5.46 -321.23 -1.75 -21.86 16 6 C 0.71 21.69 8.53 179.06 1.53 23.22 16 7 O -0.60 -23.56 13.47 -4.02 -0.05 -23.62 16 8 N -0.72 -14.11 5.56 -478.52 -2.66 -16.77 16 9 C 0.15 3.05 5.63 86.38 0.49 3.54 16 10 C -0.04 -0.48 5.91 29.85 0.18 -0.30 16 11 C 0.06 1.07 6.49 43.10 0.28 1.35 16 12 C -0.28 -3.75 10.72 21.99 0.24 -3.51 16 13 C 0.06 0.62 11.49 83.54 0.96 1.58 16 14 N -0.39 -5.82 4.01 -369.55 -1.48 -7.30 16 15 C 0.09 0.65 11.47 127.77 1.47 2.11 16 16 N -0.34 -7.38 12.54 -47.38 -0.59 -7.98 16 17 N -0.36 -17.30 12.59 -54.44 -0.69 -17.98 16 18 N -0.34 -17.10 3.59 -338.44 -1.22 -18.32 16 19 C 0.28 14.87 5.81 85.63 0.50 15.37 16 20 C -0.55 -31.61 9.39 25.60 0.24 -31.37 16 21 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 22 C 0.02 1.31 5.46 84.66 0.46 1.78 16 23 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 24 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.07 2.59 7.71 -2.39 -0.02 2.57 16 30 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.16 6.98 5.91 -2.91 -0.02 6.97 16 32 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 33 H 0.42 4.78 8.49 -92.70 -0.79 4.00 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 0.85 8.12 -2.39 -0.02 0.83 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 2.76 7.65 -2.38 -0.02 2.74 16 45 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -82.43 388.95 1.91 -80.52 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.57 Total: 23.29 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 8.61 Total: 16.33 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -8.11 Total: -142.18 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -82.43 1.91 -80.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355204572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.794 kcal (2) G-P(sol) polarization free energy of solvation -82.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds