Wall clock time and date at job start Tue Mar 31 2020 17:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46970 * 60.00134 * 10 8 6 12 12 H 1.48493 * 109.47164 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46789 * 300.00403 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.39865 * 120.00066 * 180.02562 * 21 19 18 23 23 N 1.33627 * 125.60310 * 0.02562 * 22 21 19 24 24 C 1.30853 * 109.77892 * 179.97438 * 23 22 21 25 25 N 1.34381 * 108.20300 * 359.97438 * 24 23 22 26 26 C 1.46501 * 126.76692 * 180.02562 * 25 24 23 27 27 N 1.31175 * 125.60331 * 179.71609 * 22 21 19 28 28 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 29 29 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 30 30 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 31 31 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 32 32 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 33 33 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 35 35 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 36 36 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 37 37 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 38 38 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 39 39 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 40 40 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 41 41 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 42 42 H 1.08005 * 125.90064 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47108 * 89.99761 * 26 25 24 44 44 H 1.09004 * 109.47126 * 210.00352 * 26 25 24 45 45 H 1.09007 * 109.46881 * 329.99914 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 7.1105 1.6925 4.1324 12 1 7.9893 3.8424 3.4345 13 1 5.6764 3.6480 4.1358 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 0.5924 -6.4545 -2.6093 23 7 0.3505 -7.1936 -1.5227 24 6 -0.0401 -8.3905 -1.8793 25 7 -0.0574 -8.4438 -3.2219 26 6 -0.4330 -9.5931 -4.0491 27 7 0.3509 -7.1792 -3.6757 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.6091 0.9985 -0.5150 32 1 4.5561 2.4336 -0.5130 33 1 7.7464 3.6684 0.8508 34 1 5.1338 -1.8133 -1.0152 35 1 5.6489 -1.0904 0.5276 36 1 4.6053 -2.5323 0.5249 37 1 2.5935 -3.1872 0.5134 38 1 0.9012 -2.6353 0.5137 39 1 0.9678 -2.4295 -1.9564 40 1 2.6600 -2.9814 -1.9568 41 1 1.1767 -4.6638 -3.4497 42 1 -0.3039 -9.1962 -1.2101 43 1 -1.5029 -9.5589 -4.2543 44 1 0.1185 -9.5602 -4.9888 45 1 -0.1939 -10.5155 -3.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356428609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:06 Heat of formation + Delta-G solvation = 127.549902 kcal Electronic energy + Delta-G solvation = -27273.183641 eV Core-core repulsion = 23329.583778 eV Total energy + Delta-G solvation = -3943.599864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -42.38423 -40.60960 -39.67402 -35.45681 -34.37774 -33.64229 -33.28765 -32.46301 -31.31081 -30.27197 -28.94500 -27.57984 -26.62981 -25.86411 -24.21662 -22.78061 -22.36980 -21.57762 -20.14254 -18.79440 -18.62630 -17.97097 -17.11404 -16.68364 -16.51656 -16.27135 -15.62670 -15.33791 -14.87125 -14.51954 -14.33705 -14.03585 -13.90941 -13.61634 -13.40386 -13.04061 -12.88912 -12.58969 -12.51396 -12.27643 -12.13570 -12.09853 -11.83384 -11.60468 -11.33839 -11.22334 -11.13556 -10.95387 -10.78228 -10.72527 -10.40418 -10.24328 -10.11083 -9.79158 -9.72395 -9.58590 -8.92467 -8.63536 -8.16242 -7.46943 -6.25373 -4.32954 1.24723 1.74150 2.29809 2.67388 2.80939 3.08292 3.24143 3.27829 3.32025 3.39319 3.63445 4.00243 4.19425 4.30578 4.58568 4.64016 4.88045 4.93005 5.07938 5.18049 5.19989 5.28589 5.35763 5.40183 5.70359 5.72785 5.87093 5.95190 5.96118 5.99334 6.03359 6.05844 6.26274 6.29488 6.38961 6.48215 6.52342 6.55646 6.89805 6.91163 7.03231 7.12972 7.53144 7.67269 7.88587 7.89450 8.07238 8.09482 8.68226 8.76803 9.33591 10.82037 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002012 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.021316 B =13911.965947 C =14297.491516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.095 3.905 15 C -0.092 4.092 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.127 4.127 19 C 0.512 3.488 20 O -0.476 6.476 21 N -0.635 5.635 22 C 0.452 3.548 23 N -0.520 5.520 24 C 0.268 3.732 25 N -0.384 5.384 26 C 0.100 3.900 27 N -0.348 5.348 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.423 0.577 42 H 0.223 0.777 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 -24.078 -10.471 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.036 4.036 15 C -0.150 4.150 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.167 4.167 19 C 0.298 3.702 20 O -0.343 6.343 21 N -0.290 5.290 22 C 0.083 3.917 23 N -0.250 5.250 24 C -0.030 4.030 25 N -0.177 5.177 26 C -0.042 4.042 27 N -0.185 5.185 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.260 0.740 42 H 0.239 0.761 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.050 -22.574 -10.115 27.968 hybrid contribution 0.396 -0.614 0.401 0.834 sum -12.654 -23.188 -9.714 28.146 Atomic orbital electron populations 1.20024 0.88040 1.02073 1.02168 1.21955 0.96111 0.90758 1.02511 1.77273 0.87529 1.22665 1.24583 1.49251 1.05752 1.04192 1.51269 1.19648 0.77963 0.89593 0.98871 1.21280 1.13025 1.31833 0.91375 0.91832 1.24927 0.95721 0.94996 0.98113 1.69909 1.19036 1.32939 1.31092 0.86415 0.78017 0.78494 0.83779 1.19921 1.20958 1.19957 1.20773 0.96121 0.85673 1.01058 1.20412 0.94427 0.97846 1.02354 1.19312 0.91383 0.94939 1.22503 1.19416 1.01879 0.91017 0.92692 1.21772 1.03379 0.89582 1.01986 1.21416 0.76905 0.89376 0.82488 1.90820 1.46196 1.67210 1.30089 1.42993 1.67336 1.07091 1.11614 1.20484 0.95922 0.88092 0.87198 1.70649 1.23028 1.02328 1.28993 1.26181 0.96096 0.96682 0.84033 1.50120 1.51243 1.10096 1.06233 1.21933 1.01832 0.84149 0.96294 1.78159 1.29280 0.91772 1.19283 0.91369 0.91639 0.91414 0.93085 0.93060 0.92211 0.91238 0.89977 0.90621 0.91148 0.91064 0.88449 0.88467 0.73993 0.76129 0.90291 0.89062 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.12 36.01 0.36 -0.55 16 2 C 0.05 0.97 7.22 -82.40 -0.59 0.37 16 3 N -0.30 -6.81 12.58 33.67 0.42 -6.39 16 4 N -0.33 -7.57 3.60 -58.32 -0.21 -7.78 16 5 C 0.26 6.59 5.81 -5.19 -0.03 6.56 16 6 C -0.54 -14.86 9.39 -34.44 -0.32 -15.19 16 7 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 10 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 14 C 0.10 1.88 6.93 -82.27 -0.57 1.31 16 15 C -0.09 -1.51 9.68 36.01 0.35 -1.16 16 16 C -0.27 -4.76 5.35 -105.05 -0.56 -5.32 16 17 C -0.01 -0.16 4.45 -27.88 -0.12 -0.28 16 18 C -0.13 -1.42 5.68 -27.89 -0.16 -1.58 16 19 C 0.51 6.48 7.80 -10.99 -0.09 6.40 16 20 O -0.48 -7.86 14.66 5.55 0.08 -7.78 16 21 N -0.64 -6.97 5.44 -12.82 -0.07 -7.04 16 22 C 0.45 5.77 8.81 -320.85 -2.83 2.94 16 23 N -0.52 -6.89 9.37 -14.92 -0.14 -7.03 16 24 C 0.27 2.24 12.65 -90.68 -1.15 1.09 16 25 N -0.38 -3.06 4.03 -69.45 -0.28 -3.34 16 26 C 0.10 0.27 11.53 59.85 0.69 0.96 16 27 N -0.35 -3.96 12.72 30.04 0.38 -3.58 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 31 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.50 7.74 -51.93 -0.40 1.09 16 36 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 37 H 0.07 1.04 7.10 -51.93 -0.37 0.67 16 38 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.42 3.25 8.82 -40.82 -0.36 2.89 16 42 H 0.22 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 -0.02 8.14 -51.92 -0.42 -0.45 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -37.85 389.14 -9.84 -47.69 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.49 Total: 0.28 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -5.12 Total: -2.74 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.84 Total: -59.59 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.85 -9.84 -47.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356428609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.240 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds