Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46970 * 60.00134 * 10 8 6 12 12 H 1.48493 * 109.47164 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46789 * 300.00403 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.39865 * 120.00066 * 180.02562 * 21 19 18 23 23 N 1.33627 * 125.60310 * 0.02562 * 22 21 19 24 24 C 1.30853 * 109.77892 * 179.97438 * 23 22 21 25 25 N 1.34381 * 108.20300 * 359.97438 * 24 23 22 26 26 C 1.46501 * 126.76692 * 180.02562 * 25 24 23 27 27 N 1.31175 * 125.60331 * 179.71609 * 22 21 19 28 28 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 29 29 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 30 30 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 31 31 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 32 32 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 33 33 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 35 35 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 36 36 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 37 37 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 38 38 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 39 39 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 40 40 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 41 41 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 42 42 H 1.08005 * 125.90064 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47108 * 89.99761 * 26 25 24 44 44 H 1.09004 * 109.47126 * 210.00352 * 26 25 24 45 45 H 1.09007 * 109.46881 * 329.99914 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 7.1105 1.6925 4.1324 12 1 7.9893 3.8424 3.4345 13 1 5.6764 3.6480 4.1358 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 0.5924 -6.4545 -2.6093 23 7 0.3505 -7.1936 -1.5227 24 6 -0.0401 -8.3905 -1.8793 25 7 -0.0574 -8.4438 -3.2219 26 6 -0.4330 -9.5931 -4.0491 27 7 0.3509 -7.1792 -3.6757 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.6091 0.9985 -0.5150 32 1 4.5561 2.4336 -0.5130 33 1 7.7464 3.6684 0.8508 34 1 5.1338 -1.8133 -1.0152 35 1 5.6489 -1.0904 0.5276 36 1 4.6053 -2.5323 0.5249 37 1 2.5935 -3.1872 0.5134 38 1 0.9012 -2.6353 0.5137 39 1 0.9678 -2.4295 -1.9564 40 1 2.6600 -2.9814 -1.9568 41 1 1.1767 -4.6638 -3.4497 42 1 -0.3039 -9.1962 -1.2101 43 1 -1.5029 -9.5589 -4.2543 44 1 0.1185 -9.5602 -4.9888 45 1 -0.1939 -10.5155 -3.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356428609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = 104.612478 kcal Electronic energy + Delta-G solvation = -27274.178283 eV Core-core repulsion = 23329.583778 eV Total energy + Delta-G solvation = -3944.594505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.09173 -42.13093 -40.65426 -36.32246 -36.02046 -34.86420 -34.23337 -34.13518 -32.12351 -31.63072 -30.47515 -28.44508 -27.62360 -27.53761 -25.56031 -24.15384 -23.30294 -22.53222 -21.01048 -20.28976 -20.11608 -18.81504 -18.68707 -18.01910 -17.29513 -17.17937 -16.88983 -16.39662 -16.19843 -16.02218 -15.49197 -15.07186 -14.91322 -14.60469 -14.40353 -14.20613 -14.00789 -13.93116 -13.84443 -13.51474 -13.38485 -13.22121 -13.19155 -12.85227 -12.75361 -12.67337 -12.60792 -12.55065 -12.20175 -11.91296 -11.85258 -11.71825 -11.30018 -11.10862 -10.83995 -10.74515 -10.66066 -9.81212 -9.67785 -9.01554 -8.34078 -6.51921 0.54999 1.11512 1.21743 1.36490 1.37904 1.45994 1.47019 1.90453 1.96403 2.12545 2.24556 2.33657 2.95141 3.36198 3.70905 3.87475 3.94315 3.97220 4.23866 4.25810 4.34457 4.44462 4.51051 4.59190 4.62887 4.71611 4.75691 4.77549 4.78395 4.83554 4.87567 4.90030 4.98145 5.07918 5.17500 5.27370 5.33675 5.45886 5.51099 5.56884 5.59092 5.81257 5.90505 6.07685 6.18997 6.33596 6.63562 7.05426 7.14103 7.19445 7.30725 8.71524 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002012 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.021316 B =13911.965947 C =14297.491516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.554 4.554 7 H 0.047 0.953 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.276 1.276 14 C 0.080 3.920 15 C -0.088 4.088 16 C -0.256 4.256 17 C -0.004 4.004 18 C -0.116 4.116 19 C 0.519 3.481 20 O -0.519 6.519 21 N -0.626 5.626 22 C 0.429 3.571 23 N -0.574 5.574 24 C 0.274 3.726 25 N -0.379 5.379 26 C 0.090 3.910 27 N -0.368 5.368 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.273 0.727 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.435 0.565 42 H 0.268 0.732 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 -26.711 -10.667 32.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.202 1.202 14 C -0.050 4.050 15 C -0.146 4.146 16 C -0.268 4.268 17 C -0.043 4.043 18 C -0.156 4.156 19 C 0.307 3.693 20 O -0.390 6.390 21 N -0.282 5.282 22 C 0.059 3.941 23 N -0.305 5.305 24 C -0.022 4.022 25 N -0.171 5.171 26 C -0.050 4.050 27 N -0.205 5.205 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.275 0.725 42 H 0.283 0.717 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.176 -25.255 -10.380 30.766 hybrid contribution 0.609 0.026 0.368 0.712 sum -13.567 -25.229 -10.013 30.345 Atomic orbital electron populations 1.20212 0.84727 1.03893 1.03330 1.22786 0.98095 0.90196 0.99917 1.77211 0.87836 1.25035 1.27281 1.48995 1.05288 1.05134 1.54126 1.19117 0.79038 0.88795 0.97447 1.21413 1.13421 1.32475 0.91896 0.93483 1.25737 0.95455 0.94473 1.02217 1.69993 1.19371 1.33193 1.33021 0.85434 0.77796 0.78671 0.78770 1.19011 1.19601 1.20173 1.21452 0.98198 0.84670 1.00656 1.20489 0.92382 0.97786 1.03927 1.19652 0.90321 0.96333 1.20503 1.19375 1.01626 0.88487 0.94834 1.21651 1.04869 0.88933 1.00129 1.21501 0.76074 0.89535 0.82239 1.90804 1.48343 1.68200 1.31609 1.42826 1.66603 1.06944 1.11806 1.20738 0.97072 0.88668 0.87593 1.70584 1.25165 1.04403 1.30389 1.26979 0.94187 0.96383 0.84648 1.50448 1.49933 1.09875 1.06854 1.22383 1.02714 0.83582 0.96273 1.78046 1.29564 0.93270 1.19657 0.90405 0.91132 0.88303 0.93504 0.96266 0.91743 0.88790 0.92373 0.88261 0.91544 0.90882 0.86383 0.86899 0.72455 0.71652 0.88859 0.89107 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.12 71.24 0.72 -0.95 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -16.46 12.58 -47.38 -0.60 -17.05 16 4 N -0.36 -17.09 3.60 -338.41 -1.22 -18.31 16 5 C 0.28 14.84 5.81 85.64 0.50 15.34 16 6 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.24 5.46 84.65 0.46 1.70 16 9 N -0.92 -52.74 13.29 21.45 0.28 -52.45 16 10 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.08 3.16 6.93 41.40 0.29 3.45 16 15 C -0.09 -2.84 9.68 71.24 0.69 -2.15 16 16 C -0.26 -8.80 5.35 -20.14 -0.11 -8.91 16 17 C 0.00 -0.11 4.45 29.85 0.13 0.02 16 18 C -0.12 -2.32 5.68 29.85 0.17 -2.15 16 19 C 0.52 12.43 7.80 87.66 0.68 13.11 16 20 O -0.52 -16.79 14.66 -3.05 -0.04 -16.84 16 21 N -0.63 -13.04 5.44 -312.86 -1.70 -14.74 16 22 C 0.43 10.58 8.81 260.80 2.30 12.88 16 23 N -0.57 -14.65 9.37 -201.12 -1.89 -16.54 16 24 C 0.27 3.99 12.65 180.37 2.28 6.27 16 25 N -0.38 -5.22 4.03 -373.62 -1.51 -6.73 16 26 C 0.09 0.21 11.53 127.77 1.47 1.69 16 27 N -0.37 -7.95 12.72 -58.89 -0.75 -8.70 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.99 7.92 -2.39 -0.02 1.97 16 31 H 0.05 2.50 7.68 -2.38 -0.02 2.48 16 32 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 2.16 7.74 -2.39 -0.02 2.14 16 36 H 0.10 2.69 7.14 -2.39 -0.02 2.67 16 37 H 0.07 1.85 7.10 -2.39 -0.02 1.83 16 38 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 40 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.44 6.10 8.82 -92.71 -0.82 5.28 16 42 H 0.27 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.09 0.00 8.14 -2.39 -0.02 -0.01 16 44 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.13 -0.60 8.14 -2.38 -0.02 -0.62 16 Total: -1.00 -86.37 389.14 4.95 -81.41 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.20 Total: 12.80 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 10.14 Total: 11.12 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -7.37 Total: -134.51 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.04 Total: -16.84 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -86.37 4.95 -81.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356428609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.026 kcal (2) G-P(sol) polarization free energy of solvation -86.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds